New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 2099982	13 (0.250)	6 (0.140)	5/220	NT	27.4%	intergenic (‑93/‑112)	PP_1875/PP_1876	two‑component system sensor histidine kinase/response regulator/AAA family ATP/GTP‑binding protein
	?	NC_002947	= 2100031	21 (0.490)					intergenic (‑142/‑63)	PP_1875/PP_1876	two‑component system sensor histidine kinase/response regulator/AAA family ATP/GTP‑binding protein

GCCGAATAGCCCCGGCTGCTGGTGGGTCTGTCTGTTCATTTCAGTTGATCGCCAAGCGGGGGCCGCTTGGCGCCCCTCCGCGGGCTTGCCCGTTCCCACAGGTACA‑GCTTAGCCCCAGGCTGAACGCAAGCCCTGTGGGAGCGGGCAAGCCCGCGGAGGGGCGCGCAGCGGCCCCCAAAAAACTGAGATTGTTAGGAGTCGTCATGGACGCTCGCTTGATCGCTTTTCTGGACCGCGCCGAATCGGTACTGGCGCGCCTTGAACCCCTGTTGCCGGCACAACGCCCG  >  NC_002947/2099891‑2100177                                                                                                                                              |                                                                                                                                                   gCCGAATAGCCCCGGCTGCTGGTGGGTCTGTCTGTTCATTTCAGTTGATCGCCAAGCGGGGGCCGCTTGGCGCCCCTCCGCGGGCTTGCCCGTTCCCACAGGTACA‑GCTTAGCCCCAGGCTGAACGCAAGCCCTGTGGGAGcgggcaa                                                                                                                                             >  2:23876‑M2/1‑141 (MQ=255) gCCGAATAGCCCCGGCTGCTGGTGGGTCTATCTGTTCATTTCAGTTGATCGCCAAGCGGGGGCCGCTTGGCGCCCCTCCGCGGGCTTGCCCGTTCCCACAGGTACA‑GCTTAGCCCCAGGCTGAACGCAAGCCCTGTGGGAGcgggcaa                                                                                                                                             >  7:220635‑M2/1‑141 (MQ=255)                                                           ggggCCGCTTGGCGCCCCTCCGCGGGCTTTGCCCTTCCCACAGGGAAACGGTTAGCCCCA‑GCGGCAAGCACTGCCAGGGGGGGCCGGCCAGGCCGCCGGGGGGGGCGGCGCCGCCCCCCAAAAAATGAGTTTGTTAAGAttcgggatgt                                                                                  >  6:88362/1‑143 (MQ=255)                                                                                         cccGTTCCCACAGGTACA‑GCTTAGCCCCAGGCTGAACGCAAGCCCTGTGGGAGcgggcaagcccgcggaggggcgcgcagcggcccccgcttggcgatcaactgaaatgaacagacagacccaccagcagccggggctattcggctatg                                                    <  7:33509‑M2/149‑97 (MQ=255)                                                                                          ccGTTCCCACAGGTACA‑GCTTAGCCCCAGGCTGAACGCAAGCCCTGTGGGAGcgggcaagcccgcggaggggcgcgcagcggcccccgcttggcgatcaactgaaatgaacagacagacccaccagcagccggggctattcggctatgc                                                   <  1:183144‑M2/149‑98 (MQ=255)                                                                                          ccGTTCCCACAGGTACA‑GCTTAGCCCCAGGCTGAACGCAAGCCCTGTGGGAGcgggcaagcccgcggaggggcgccaagcggcccccgcttggcgatcaactgaaatgaaca                                                                                        <  6:226165‑M2/112‑61 (MQ=255)                                                                                          ccGTTCCCACAGGTACA‑GCTTAGCCCCAGGCTGAACGCAAGCCCTGTGGGAGcgggcaagcccgcggaggggcgccaagcggcccccgcttggcgatcaactgaaatgaaca                                                                                        >  5:226165‑M2/1‑52 (MQ=255)                                                                                            gTTCCCACAGGTACA‑GCTTAGCCCCAGGCTGAACGCAAGCCCTGTGGGAGCGGGCAAGCCCGCGGAGGGGCGCGCAGCGGCCCCCAAAAAACTGAGATTGTTAGGAg                                                                                           <  8:260582/107‑1 (MQ=255)                                                                                            gTTCCCACAGGTACA‑GCTTAGCCCCAGGCTGAACGCAAGCCCTGTGGGAGCGGGCAAGCCCGCGGAGGGGCGCGCAGCGGCCCCCAAAAAACTGAGATTGTTAGGAg                                                                                           >  7:260582/1‑107 (MQ=255)                                                                                                ccACAGGTACA‑GCTTAGCCCCAGGCTGAACGCAAGCCCTGTGGGAGcgggcaagcccgcggaggggcgccaagcggcccccgcttggcgatcaactgaaatgaacagacagacccaccagcagccggggctattcggctatgcttgcgc                                             <  1:301530‑M2/149‑104 (MQ=255)                                                                                                ccACAGGTACA‑GCTTAGCCCCAGGCTGAACGCAAGCCCTGTGGGAGCGGGCAAGCCCGCGGAGGGGCGCGCAGCGGCCCCCAAAAAACTGAGATTGTTAGGAGTCGTCATGGACGCTCGCTTGATCGCTTTTCTGGACCGCGCCGAATc                                             >  3:90806/1‑149 (MQ=255)                                                                                                 cactGGTCCA‑GCTTAGCCCCAGGCTGAACGCACGCCCTGGGGGAGCGGGCAAGCCCGCGGAGGGGCGCGCAGCGGCCCCCAAAAAACTGAGATTGTTAGGAGTCGTCATGGACGCTCGCTTGATCGCTTTTCTGGACCGCGCCGAATCg                                            <  7:204886/149‑1 (MQ=255)                                                                                                 cacaGGTACA‑GCTTAGCCCCAGGCTGAACGCAAGCCCTGTGGGAGCGGGCAAGCCCGCGGAGGGGCGCGCAGCGGCCCCCAAAAAACTGAGATTGTTAGGAGTCGTCATGGACGCTCGCTTGATCGCTTTTCTGGACCGCGCCGAATCg                                            >  1:59382/1‑149 (MQ=255)                                                                                                  acaGGTACA‑GCTTAGCCCCAGGCTGAACGCAAGCCCTGTGGGAGCGGGCAAGCCCGCGGAGGGGCGCGCAGCGGCCCCCAAAAAACTGAGATTGTTAGGAGTCGTCATGGACGCTCGCTTGATCGCTTTTCTGTACCGCGCCGAATCgg                                           >  1:275486/1‑149 (MQ=255)                                                                                                      gTACA‑GCTTAGCCCCAGGCTGAACGCAAGCCCTGTGGGAGCGGGCAAGCCCGCGGAGGGGCGCGCAGCGGCCCCCAAAAAACTGAGATTGTTAGGAGTCGTCATGGACGCTCGCTTGATGGCTTTTCTGGACCGCGCCGAATCGGTACt                                       >  2:258496/1‑149 (MQ=255)                                                                                                       tACA‑GCTTAGCCCCAGGCTGAACGCAAGCACTGTGGGAGCGGGCAAGCCCGCGGAGGGGCGCGCAGCGGCCCCCAAAAAACTGAGATTGTTAGGAGTCGTCATGGACGCTCGCTTGATCGCTTTTCTGGACCGCGCCGAATCGGTACTg                                      >  1:59033/1‑149 (MQ=255)                                                                                                         cA‑GCTTAGCCCCAGGCTGAACGCAAGCCCTGTGGGAGCGGGCAAGCCCGCGGAGGGGCGCGCAGCGGCCCCCAAAAAACTGAGATTGTTAGGAGTCGTCATGGACGCTCGCTTGATCGCTTTTCTGGACCGCGCCGAATCGGTACTGgc                                    >  8:187129/1‑149 (MQ=255)                                                                                                            gCTTAGCCCCAGGCTGAACGCAAGCCCTGTGGGAGCGGGCAAGCCCGCGGAGGGGCGCGCAGCGGCCCCCAAAAAACTGAGATTGTTAGGAGTCGTCATGGACGCTCGCTTGATCGCTTTTCTGGACCGCGCCGAATCGGTACTGgcgc                                  >  7:82388/1‑149 (MQ=255)                                                                                                            gCTTAGCCCCAGGCTGAACGCAAGCCCTGTGGGAGCGGGCAAGCCCGCGGAGGGGCGCGCAGCGGCCCCCAAAAAACTGAGATTGTTAGGAGTCGTCATGGACGCTCGCTTGATCGCTTTTCTGGACCGCGCCGAATCGGTACTGgcgc                                  >  8:232433/1‑149 (MQ=255)                                                                                                              ttAGCCCCAGGCTGAACGCAAGCCCTGTGGGAGCGGGCAAGCCCGCGGAGGGGCGCGCAGCGGCCCCCAAAAAACTGAGATTGTTAGGAGTCGTCATGGACGCTCGCTTGATCGCTTTTCTGGACCGCGCCGAATCGGTACTGgcgcgc                                >  2:137198/1‑149 (MQ=255)                                                                                                                aGCCCCAGGCTGAACGCAAGCCCTGTGGGAGCGGGCAAGCCCGCGGAGGGGCGCGCAGCGGCCCCCAAAAAACTGAGATTGTTAGGAGTCGTCATGGACGCTCGCTTGATCGCTTTTCTGGACCGCGCCGAATCGGTACTGGCGCGcc                               <  2:275486/148‑1 (MQ=255)                                                                                                                   cccAGGCTGAACGCAAGCCCTGTGGGAGcgggcaagcccgcggaggggcgcgcagcggcccccgcttggcgatcaactgaaatgaacagacagacccaccagcagccggggctattcggctatgcttgcgcagcgcaaggaacgggaaa                           <  3:30103‑M2/149‑122 (MQ=255)                                                                                                                       cgcgcaccGCAGGCCCGGGGGGCGGGGGCATCCCCGCGGAGGGGCGCGCAGCGGCCCCCAAAAAACTGAGATTGTTAGGAGTCGTCATGGACGCTCGCTTGATCGCTTTTCTGGACCGCGCCGAATCGGTACTGGCGCGCCTTGAAccc                       <  5:88362/142‑1 (MQ=255)                                                                                                                        gCTGAACGCAAGCCCTGTGGGAGCGGGCAAGCCCGCGGAGGGGCGCGCAGCGGCCCCCAAAAAACTGAGATTGTTAGGAGTCGTCATGGACGCTCGCTTGATCGCTTTTCTGGACCGCGCCGAATCGGTACTGGCGCGCCTTGAAcccc                      >  2:280421/1‑149 (MQ=255)                                                                                                                            aaCGCAAGCCCTGTGGGAGCGGGCAAGCCCGCGGAGGGGCGCGCAGCGGCCCCCAAAAAACTGAGATTGTTAGGAGTCGTCATGGACGCTCGCTTGATCGCTTTTCTGGACCGCGCCGAATCGGTACTGGCGCGCCTTGAACCCCTGtt                  <  2:59382/149‑1 (MQ=255)                                                                                                                                cAAGCCCTGTGGGAGCGGGCAAGCCCGCGGAGGGGCGCGCAGCGGCCCCCAAAAAACTGAGATTGTTAGGAGTCGTCATGGACGCTCGCTTGATCGCTTTTCTGGACCGCGCCGAATCGGTACTGgcgcgc                                >  2:163512/1‑131 (MQ=255)                                                                                                                                 aaGCCCTGTGGGAGCGGGCAAGCCCGCGGAGGGGCGCGCAGCGGCCCCCAAAAAACTGAGATTGTTAGGAGTCGTCATGGACGCTCGCTTGATCGCTTTTCTGGACCGCGCCGAATCGGTACTGGCGCGCCTTGAACCCATGTTGCCgg             >  8:53014/1‑149 (MQ=255)                                                                                                                                    cccTGTGGGAGCGGGCAAGCCCGCGGAGGGGCGCGCAGCGGCCCCCAAAAAACTGAGATTGTTAGGAGTCGTCATGGACGCTCGCTTGATCg                                                                   <  4:2815/92‑1 (MQ=255)                                                                                                                                    cccTGTGGGAGCGGGCAAGCCCGCGGAGGGGCGCGCAGCGGCCCCCAAAAAACTGAGATTGTTAGGAGTCGTCATGGACGCTCGCTTGATCg                                                                   >  3:2815/1‑92 (MQ=255)                                                                                                                                           ggAGCGGGCAAGCCCGCGGAGGGGCGCGCAGCGGCCCCCAAAAAACTGAGATTGTTAGGAGTCGTCATGGACGCTCGCTTGATGGCTTTTCTGGACCGCGCCGAATCGGTACTGGCGCGCCTTGAACCCCTGTTGCCGGCACAACGcc    <  1:258496/148‑1 (MQ=255)                                                                                                                                            ccgCGGGCTTGCCCGCGGAGGGGCGCGCAGCGGCCCCCAAAAAACTGAGATTGTTAGGAGTCGTCATGGACGCTCGCTTGATCGCTTTTCTGGACCGCGCCGAATCGGTACTGGCGCGCCTTGAACCCCTGTTGCCGGCACAACGCCCg  >  5:306039/3‑149 (MQ=255)                                                                                                                                              |                                                                                                                                                   GCCGAATAGCCCCGGCTGCTGGTGGGTCTGTCTGTTCATTTCAGTTGATCGCCAAGCGGGGGCCGCTTGGCGCCCCTCCGCGGGCTTGCCCGTTCCCACAGGTACA‑GCTTAGCCCCAGGCTGAACGCAAGCCCTGTGGGAGCGGGCAAGCCCGCGGAGGGGCGCGCAGCGGCCCCCAAAAAACTGAGATTGTTAGGAGTCGTCATGGACGCTCGCTTGATCGCTTTTCTGGACCGCGCCGAATCGGTACTGGCGCGCCTTGAACCCCTGTTGCCGGCACAACGCCCG  >  NC_002947/2099891‑2100177

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.