New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 2295510	43 (0.830)	3 (0.060)	3/256	NT	6.0%	intergenic (+55/‑68)	ppgL/PP_5496	L‑alpha‑hydroxyglutaric acid gamma‑lactonase/hypothetical protein
	?	NC_002947	= 2295563	52 (1.040)					intergenic (+108/‑15)	ppgL/PP_5496	L‑alpha‑hydroxyglutaric acid gamma‑lactonase/hypothetical protein

CGTCGCGATCCGCGCAGTGGCAAGCTGCTGGAGACGGTGCAGACGCTGAAGCAGGATGCACCCTCGGACCTCAAGTTCATCGAGTGATATCGATCAGCGTGATAATCGGTACTGCTGCAATGAATTTTTGCGTGCGGCCTCGGCGGCGTAAGTTTGACCCAAGGCCCAAAAGGGCCACCGTCAAACCACCGCCGTCGAGGTAAGCCCAGATGAACTTCAATCTCTTCCCGGTTATTGCCGCATCCGCCATTTCCGCATCGGTCGTACTGCCAGCGCATGCCCATGCCGA  >  NC_002947/2295369‑2295657                                                                                                                                              |                                                                                                                                                    cGTCGCGATCCGCGCAGTGGCAAGCTGCTGGAGACGGTGCAGACGCTGAAGCAGGATGCACCCTCGGACCTCAAGTTCATCGAGTGATATCGATCAGCGTGATAATCGGTACTGCTGCAATGAATTTTTGCGTGCGGCCTCGgcggcg                                                                                                                                               <  1:78929/148‑1 (MQ=255)    cgcgATCCGCGCAGTGGCAAGCTGCTGGAGACGGTGCAGACGCTGAAGCAGGATGCACCCTCGGACCTCAAGTTCATCGAGTGATATCGATCAGCGTGATAATCGGTACTGCTGCAATGAATTTTTGCGTGCGGCCTCGGCGGCGTAAg                                                                                                                                           >  4:318142/1‑149 (MQ=255)       gATCCGCGCAGTGGCAAGCTGCTGGAGACGGTGCAGACGCTGAAGCAGGATGCACCCTCGGACCTCAAGTTCATCGAGTGATATCGATCAGCGTGATAATCGGTACTGCTGCAATGAATTTTTGCGTGCGGCCTCGGCGGCGTAAGttt                                                                                                                                        >  7:38628/1‑149 (MQ=255)         tCCGCGCAGTGGCAAGCTGCTGGAGACGGTGCAGACGCTGAAGCAGGATGCACCCTCGGACCTCAAGTTCATCGAGTGATATCGATCAGCGTGATAATCGGTACTGCTGCAATGAATTTTTGCGTGCGGCCTCGGCGGCGTAAGTTTGa                                                                                                                                      <  7:296117/149‑1 (MQ=255)                    gCAAGCTGCTGGAGACGGTGCAGACGCTGAAGCAGGATGCACCCTCGGACCTCAAGTTCATCGAGTGATATCGATCAGCGTGATAATCGGTACTGCTGCAATGAATTTTTGCGTGCGGCCTCGGCGGCGTAAGTTTGACCCAAGGccc                                                                                                                            >  1:152182/1‑148 (MQ=255)                      aaGCTGCTGGAGACGGTGCAGACGCTGAAGCAGGATGCACCCTCGGACCTCAAGTTCATCGAGTGATATCGATCAGCGTGATAATCGGTACTGCTGCAATGAATTTTTGCGTGCGGCCTCGGCGGCGTAAGt                                                                                                                                          <  1:20511/132‑1 (MQ=255)                      aaGCTGCTGGAGACGGTGCAGACGCTGAAGCAGGATGCACCCTCGGACCTCAAGTTCATCGAGTGATATCGATCAGCGTGATAATCGGTACTGCTGCAATGAATTTTTGCGTGCGGCCTCGGCGGCGTAAGt                                                                                                                                          >  2:20511/1‑132 (MQ=255)                      aaGCTGCTGGAGACGGTGCAGACGCTGAAGCAGGATGCACCCTCGGACCTCAAGTTCATCGAGTGATATCGATCAGCGTGATAATCGGTACTGCTGCAATGAATTTTTGCGTGCGGCCTCGGCGGCGTAAGTTTGACCCAAGGCCCaa                                                                                                                          >  6:37781/1‑148 (MQ=255)                               gagaCGGTGCAGACGCTGAAGCAGGATGCACCCTCGGACCTCAAGTTCATCGAGTGATATCGATCAGCGTGATAATCGGTACTGCTGCAATGAATTTTTGCGTGCGGCCTCGGCGGCGTAAGTTTGACCCAAGGCCCAAAAGGGCCAc                                                                                                                 <  8:38628/148‑1 (MQ=255)                                 gaCGGTGCAGACGCTGAAGCAGGATGCACCCTCGGACCTCAAGTTCATCGAGTGATATCGATCAGCGTGATAATCGGTACTGCTGCAATGAATTTTTGCGTGCGGCCTCGGCGGCGTAAGTTTGACCCAAGGCCCAAAAGGGCCACCGt                                                                                                              <  5:37781/149‑1 (MQ=255)                                     gTGCAGACGCTGAAGCAGGATGCACCCTCGGACCTCAAGTTCATCGAGTGATATCGATCAGCGTGATAATCGGTACTGCTGCAATGAATTTTTGCGTGCGGCCTCGGCGGCGTAAGTTTGACCCAAGGCCCAAAAGGGCCACCGTCaaa                                                                                                          >  2:60851/1‑149 (MQ=255)                                          gACGCTGAAGCAGGATGCACCCTCGGACCTCAAGTTCATCGAGTGATATCGATCAGCGTGATAATCGGTACTGCTGCAATGAATTTTTGCGTGCGGCCTCGGCGGCGTAAGTTTGAcc                                                                                                                                    <  4:104210/118‑1 (MQ=255)                                          gACGCTGAAGCAGGATGCACCCTCGGACCTCAAGTTCATCGAGTGATATCGATCAGCGTGATAATCGGTACTGCTGCAATGAATTTTTGCGTGCGGCCTCGGCGGCGTAAGTTTGAcc                                                                                                                                    >  3:104210/1‑118 (MQ=255)                                           aCGCTGAAGCAGGATGCACCCTCGGACCTCAAGTTCATCGAGTGATATCGATCAGCGTGATAATCGGTACTGCTGCAATGAATTTTTGCGTGCGGCCTCGGCGGCGTAAGTTTGACCCAAGGCCCAAAAGGGCCACCGTCAAACCAccg                                                                                                    >  4:72944/1‑149 (MQ=255)                                             gCTGAAGCAGGATGCACCCTCGGACCTCAAGTTCATCGAGTGATATCGATCAGCGTGATAATCGGTACTGCTGCAATGAATTTTTGCGTGCGGCCTCGGCGGCGTAAGTTTGACCCAAGGCCCAAAGGGGCCACCGTCAAACCAccgcc                                                                                                  >  2:258935/1‑149 (MQ=255)                                                  atctggatgcACCCTCGGACCTCAAGTTCATCGAGTGATATCGATCAGCGTGATAATCGGTACTGCTGCAATGAATTTTTGCGTGCGGCCTCGacggcggtggtttgacggtggcccttttgggccttgggtcaaacttacgccgccga                                                                                             <  3:2140‑M1/145‑57 (MQ=255)                                                  aGCAGGATGCACCCTCGGACCTCAAGTTCATCGAGTGATATCGATCAGCTTGATAATCGGTACTGCTGCAATGAATTTTTGCGTGCGGCCTCGGCGGCGTAAGTTTGACCCAAGGCCCAAAAGGGCCACCGTCAAACCACCGCCGTcga                                                                                             >  6:295178‑M2/1‑146 (MQ=255)                                                  aGCAGGATGCACCCTCGGACCTCAAGTTCATCGAGTGATATCGATCAGCGTGATAATCGGTACTGCTGCAATGAATTTTTGCGTGCGGCCTCGGCGGCGTAAGTTTGACCCAAGGCCCAAAAGGGCCACCGTCAAACCACCGCCGTcga                                                                                             >  1:60851‑M2/1‑146 (MQ=255)                                                    cAGGATGCACCCTCGGACCTCAAGTTCATCGAGTGATATCGATCAGCGTGATAATCGGTACTGCTGCAATGAATTTTTGCGTGCGGCCTCGacggcggtggtttgacggtggcccttttgggccttgggtcaaacttacgccgccgagg                                                                                           <  4:8438‑M1/149‑59 (MQ=255)                                                       gATGCACCCTCGGACCTCAAGTTCATCGAGTGATATCGATCAGCGTGATAATCGGTACTGCTGCAATGAATTTTTGCGTGCGGCCTCGacggcggtggtttgacggtggcccttttgggccttgggtcaaacttacgccgccga                                                                                             >  4:2140‑M1/1‑88 (MQ=255)                                                           cACCCTCGGACCTCAAGTTCATCGAGTGATATCGATCAGCGTGATAATCGGTACTGCTGCAATGAATTTTTGCGTGCGGCCTCGGCGGCGTAAGTTTGACCCAAGGCCCAAAAGGGCCACCGTCAAACCACCGCCGTCGAGGTAAGccc                                                                                    <  2:220615/149‑1 (MQ=255)                                                              ccTCTGACCTCAATTTCATCGATTGATATCGATCAGCGTGATAATCGGTACTGATGCAATGAATTTTTGCTTGAGGACTCGGCTGCGTAAGTTTGACCCAAGGCCCaaaatgt                                                                                                                     <  1:254807/113‑4 (MQ=255)                                                                tCGGACCTCAAGTTCATCGAGTGATATCGATCAGCGTGATAATCGGTACTGCTGCAATGAATTTTTGCGTGCGGCCTCGGCGGCGTAAGTTTGACCCAAGGCCCAAAAGGGCCACCGTCAAACCACCGCCGTCGAGGTAAGCCCAGAt                                                                                >  4:116001/1‑148 (MQ=255)                                                                      cTCAAGTTCATCGAGTGATATCGATCAGCGTGATAATCGGTACTGCTGCAATGAATTTTTGCGTGCGGCCTCGGCGGCGTAAGTTTGACCCAAGGCCCAAAAGGGCCACCGTCAAACCACCGCCGTCGAGGTAAGCCCAGATGAACtt                                                                          >  7:169334/1‑148 (MQ=255)                                                                        cAAGTTCATCGAGTGATATCGATCAGCGTGATAATCGGTACTGCTGCAATGAATTTTTGCGTGCGGCCTCGGCGGCGTAAGTTTGACCCAAGGCCCAAAAGGGCCACCGTCAAACCACCGCCGTCGAGGTAAGCCCAGATGAACTTCaa                                                                       >  5:137885/1‑149 (MQ=255)                                                                        cAAGTTCATCGAGTGATATCGATCAGCGTGATAATCGGTACTGCTGCAATGAATTTTTGCGTGCGGCCTCGGCGGCGTAAGTTTGACCCAAGGCCCAAAACGGCCACAGTCAAACCACCGCCGTCGAGGTAAGCCCAGATGAACTTCa                                                                        >  1:322408/1‑148 (MQ=255)                                                                           gTTCATCGAGTGATATCGATCAGCGTGATAATCGGTACTGCTGCAATGAATTTTTGCGTGCGGCCTCGGCGGCGTAAGTTTGACCCAAGGCCCAAAAGGGCCACCGTCAAACCACCGCCGTCGAGGTAAGCCCAGATGAACTTCAAtct                                                                    >  3:230746/1‑149 (MQ=255)                                                                               aTCGAGTGATATCGATCAGCGTGATAATCGGTACTGCTGCAATGAATTTTTGCGTGCGGCCTCGGCGGCGTAAGTTTGACCCAAGGCCCAAAAGGGCCACCGTCAAACCACCGCCGTCGAGGTAAGCCCAGATGAACTTCAATCTCTTc                                                                >  5:150/1‑149 (MQ=255)                                                                                  gAGTGATATCGATCAGCGTGATAATCGGTACTGCTGCAATGAATTTTTGCGTGCGGCCTCGGCGGCGTAAGTTTGACCCAAGGCCCAAAAGGGCCACCGTCAAACCACCGCCGTCGAGGTAAGCCCAGATGAACTTCAATCTCTTccc                                                              <  8:169334/148‑1 (MQ=255)                                                                                  gAGTGATATCGATCAGCGTGATAATCGGTACTGCTGCAATGAATTTTTGCGTGCGGCCTCGGCGGCGTAAGTTTGACCCAAGGCCCAAAAGGGCCACCGTCAAACCACCGCCGTCGAGGTAAGCCCAGATGAACTTCAATCTCTTCCCg                                                             >  8:77419/1‑149 (MQ=255)                                                                                    gTGATATCGATCAGCGTGATAATCGGTACTGCTGCAATGAATTTTTGCGTGCGGCCTCGGCGGCGTAAGTTTGACCCAAGGCCCAAAAGGGCCACCGTCAAACCACCGCCGTCGAGGTAAGCCCAGATGAACTTCAATCTCTTCCCGGt                                                           <  7:77419/149‑1 (MQ=255)                                                                                     tGATATCGATCAGCGTGATAATCGGTACTGCTGCAATGAATTTTTGCGTGCGGCCTCGGCGGCGTAAGTTTGACCCAAGGCCCAAAAGGGCCACCGTCAAACCACCGCCGTCGAGGTAAGCCCAGATGAAc                                                                            >  5:256649/1‑131 (MQ=255)                                                                                     tGATATCGATCAGCGTGATAATCGGTACTGCTGCAATGAATTTTTGCGTGCGGCCTCGGCGGCGTAAGTTTGACCCAAGGCCCAAAAGGGCCACCGTCAAACCACCGCCGTCGAGGTAAGCCCAGATGAAc                                                                            <  6:256649/131‑1 (MQ=255)                                                                                        tatCGATCAGCGTGATAATCGGTACTGCTGCAATGAATTTTTGCGTGCGGCCTCGGCGGCGTAAGTTTGACCAAAGGCACAAAAGGGCCACCGTCAAACCACCGCCGTCGAGGTAAGCCCAGATGAACTTCAATCTCTTACCGGTTAtt                                                       >  1:284243/1‑149 (MQ=255)                                                                                         atCGATCAGCGTGATAATCGGTACTGCTGCAATGAATTTTTGCGTGCGGCCTCGGCGGCGTAAGTTTGACCCAAGGCCCAAAAGGGCCACCGTCAAACCACCGCCGTCGAGGTAAGCCCAGATGAACTTCAATCTCTTCCCGGTTATTg                                                      >  4:277661/1‑149 (MQ=255)                                                                                                   gTGATAATCGGTACTGCTGCAATGAATTTTTGCGTGCGGCCTCGGCGGCGTAAGTTTGACCCAAGGCCCAAAAGGGTCACCGTCAAACCACCGCCGTCGAGGTAAGCCCAGATGAACTTCAATCTCTTCCCGGTTATTGCCGCATCCGc                                            >  7:3296/1‑149 (MQ=255)                                                                                                      aTAATCGGTACTGCTGCAATGAATTTTTGCGTGCGGCCTCGGCGGCGTAAGTTTGACCCAAGGCCCAAAAGGGCCACCGTCAAACCACCGCCGTCGAGGTAAGCCCAGATGAACTTCAATCTCTTCCCGGTTATTGCCGCATCCGCCAt                                         >  4:181844/1‑149 (MQ=255)                                                                                                        aaTCGGTACTGCTGCAATGAATTTTTGCGTGCGGCCTCGGCGGCGTAAGTTTGACCCAAGGCCCAAAAGGGCCACCGTCAAACCACCGCCGTCGAGGTAAGCCCAGATGAACTTCAATCTCTTCACGGTTATTGCCGCATCCGCCAttt                                       >  6:229045/1‑149 (MQ=255)                                                                                                          tCGGTACTGCTGCAATGAATTTTTGCGTGCGGCCTCGGCGGCGTAAGTTTGACCCAAGGCCCAAAAGGGCCACCGTCAAACCACCGCCGTCGAGGTAAGCCCAGATg                                                                               >  8:220747/1‑107 (MQ=255)                                                                                                          tCGGTACTGCTGCAATGAATTTTTGCGTGCGGCCTCGGCGGCGTAAGTTTGACCCAAGGCCCAAAAGGGCCACCGTCAAACCACCGCCGTCGAGGTAAGCCCAGATg                                                                               <  7:220747/107‑1 (MQ=255)                                                                                                          tCGGTACTGCTGCAATGAATTTTTGCGTGCGGCCTCGGCGGCGTAAGTTTGACCCAAGGCCCAAAAGGGCCACCGTCAAACCACCGCCGTCGAGGTAAGCCCAGATGAACTTCAATCTCTTCCCGGTTATTGCCGCATCCGCCATTTcc                                     >  4:173584/1‑149 (MQ=255)                                                                                                            ggTACTGCTGCAATGAATTTTTGCGTGCGGCCTCGGCGGCGTAAGTTTGACCCAAGGCCCAAAAGGGCCACCGTCAAACCACCGCCGTCGAGGTAAGCCCAGATGAACTTCAATCTCTTCCCGGTTATTGCCGCATCCGCCATTTCCg                                    <  3:318142/148‑1 (MQ=255)                                                                                                               aCTGCTGCAATGAATTTTTGCGTGCGGCCTCGGCGGCGTAAGTTTGACCCAAGGCCCAAAAGGGCCACCGTCAAACCACCGCCGTCGAGGTAAGCCCAGATGAACTTCAATCTCTTCCCGGTTATTGCCGCATCCGCCATTTCCGCAt                                 <  6:150/148‑1 (MQ=255)                                                                                                                      cAATGAATTTTTGCGTGCGGCCTCGGCGGCGTAAGTTTGACACAAGGCCCAAAAGGGCCACCGTCAAACCACCGCCGTCGAGGTAAGCCCAGATGAACTTCAATCTCTTCCCGGTTATTGCCGCATCCGCCATTTCCGCATCGGTCGTa                         >  7:70042/1‑149 (MQ=255)                                                                                                                         tGAATTTTTGCGTGCGGCCTCGGCGGCGTAAGTTTGACCCAAGGCCCAAAAGGGCCACCGTCAAACCACCGCCGTCGAGGTAAGCCCAGATGAACTTCAATCTCTTCCCGGTTATTGCCGCATCCGCCATTTCCGCATCGGTCGTACTg                      >  4:218940/1‑149 (MQ=255)                                                                                                                                  gcgtgcgGCCTCGGCGGCGTAAGTTTGACCCAAGGCCCAAAAGGGCCACCGTCAAACCACCGCCGTCGAGGTAAGCCCAGATGAACTTCAATCTCTTCCCGGTTATTGCCGCATCCGCCATTTCCGCATCGGTCGTACTGCCAGCGca              <  2:152182/148‑1 (MQ=255)                                                                                                                                    gtgcgGCCTCGGCGGCTTAAGTTTGACCCAAGGCCCAAAAGGGCCACCGTCAAACCACCGCCGTCGAGGTAAGCCCAGATGAACTTCAATCTCTTCCCGGTTATTGCCGCATCCGCCATTTCCGCATCGGTCGTACTGCCAGCGcatgc           <  1:112069/149‑1 (MQ=255)                                                                                                                                    gtgcgGCCTCGGCGGCGTAAGTTTGACCCAAGGCCCAAAAGGGTCACCGTCAAACCACCGCCGTCGAGGTAAGCCCAGATGAACTTCAATCTCTTCCCGGTTATTGCCGCATCCGCCATTTCCGCATCGGTCGTACTGCCAGCGcatgc           <  8:3296/149‑1 (MQ=255)                                                                                                                                          ccTCGGCGGCGTAAGTTTGACCCAAGGCCCAAAGGGGCCACCGTCAAACCACCGCCGTCGAGGTAAGCCCAGATGAACTTCAATCTCTTCCCGGTTATTGCCGCATCCGCCATTTCCGCATCGGTCGTACTGCCAGCGcatgcccatgc     <  1:258935/149‑1 (MQ=255)                                                                                                                                          ccTCGGCGGCGTAAGTTTGACCCAAGGCCCAAAAGGGCCACCGTCAAACCACCGCCGTcgaggccgcacgcaaaaattcattgcagcagtaccgattatcacgctgatcgatatcactcgatgaacttgaggtccgagggtgcatcctg     <  4:8438‑M2/149‑92 (MQ=255)                                                                                                                                            tCGacggcggtggtttgacggtggcccttttgggccttgggtcaaacttacgccgccgaggccgcacgcaaaaattcattgcagcagtaccgattatcacgctgatcgatatcactcgatgaacttgaggtccgagggtgcatcctgct   >  1:60851‑M1/1‑3 (MQ=255)                                                                                                                                            tCGacggcggtggtttgacggtggcccttttgggccttgggtcaaacttacgccgccgaggccgcacgcaaaaattcattgcagcagtaccgattatcaagctgatcgatatcactcgatgaacttgaggtccgagggtgcatcctgct   >  6:295178‑M1/1‑3 (MQ=255)                                                                                                                                            tCGGCGGCGTAAGTTTGACCCAAGGCCCAAAAGGGCCACCGTCAAACCACCGCCGTcgaggccgcacgcaaaaattcattgcagcagtaccgattatcacgctgatcgatatcactcgatgaacttgaggtccgagggtgcatccagat   <  3:2140‑M2/149‑94 (MQ=255)                                                                                                                                            tCGGCGGCGTAAGTTTGACCCAAGGCCCAAAAGGGCCACCGTCAAACCACCGCCGTcgaggccgcacgcaaaaattcattgcagcagtaccgattatcacgctgatcgatatcactcgatgaacttgaggtccgagggtgcatc        >  4:2140‑M2/1‑56 (MQ=255)                                                                                                                                              ggcggcGTAAGTTTGACCCAAGGCCCAATAGGGCCTCCGTCAAACCACCGCTGGCGAGGTAAGCCCAGATGAACTTCAATCTCTTCCCGGTTATTGCCGCATCGGCAATTTCCGCATCGGTCGTACTGCCAGCGCTTGCCCATGCCGa  <  2:322408/148‑1 (MQ=255)                                                                                                                                              |                                                                                                                                                    CGTCGCGATCCGCGCAGTGGCAAGCTGCTGGAGACGGTGCAGACGCTGAAGCAGGATGCACCCTCGGACCTCAAGTTCATCGAGTGATATCGATCAGCGTGATAATCGGTACTGCTGCAATGAATTTTTGCGTGCGGCCTCGGCGGCGTAAGTTTGACCCAAGGCCCAAAAGGGCCACCGTCAAACCACCGCCGTCGAGGTAAGCCCAGATGAACTTCAATCTCTTCCCGGTTATTGCCGCATCCGCCATTTCCGCATCGGTCGTACTGCCAGCGCATGCCCATGCCGA  >  NC_002947/2295369‑2295657

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.