| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 2295510 | 43 (0.830) | 3 (0.060) | 3/256 | NT | 6.0% | intergenic (+55/‑68) | ppgL/PP_5496 | L‑alpha‑hydroxyglutaric acid gamma‑lactonase/hypothetical protein |
| ? | NC_002947 | = 2295563 | 52 (1.040) | intergenic (+108/‑15) | ppgL/PP_5496 | L‑alpha‑hydroxyglutaric acid gamma‑lactonase/hypothetical protein | |||||
AGCAGGATGCACCCTCGGACCTCAAGTTCATCGAGTGATATCGATCAGCGTGATAATCGGTACTGCTGCAATGAATTTTTGCGTGCGGCCTCGGCGGCGTAAGTTTGACCCAAGGCCCAAAAGGGCCACCGTCAAACCACCGCCGTCGAGGTAAGCCCAGATGAACTTCAATCTCTTCCCGGTTATTGCCGCATCCGCCATTTCCGCATCGGTCGTACTGCCAGCGCATGCCCATGCCGACAGCAGCAAGGCTTCTGCCACCCACAGCTACACCGAGCAGTACCTGCGCCAGAG > NC_002947/2295418‑2295711 | aGCAGGATGCACCCTCGGACCTCAAGTTCATCGAGTGATATCGATCAGCTTGATAATCGGTACTGCTGCAATGAATTTTTGCGTGCGGCCTCGGCGGCGTAAGTTTGACCCAAGGCCCAAAAGGGCCACCGTCAAACCACCGCCGTcga > 6:295178‑M2/1‑146 (MQ=255)aGCAGGATGCACCCTCGGACCTCAAGTTCATCGAGTGATATCGATCAGCGTGATAATCGGTACTGCTGCAATGAATTTTTGCGTGCGGCCTCGGCGGCGTAAGTTTGACCCAAGGCCCAAAAGGGCCACCGTCAAACCACCGCCGTcga > 1:60851‑M2/1‑146 (MQ=255) cACCCTCGGACCTCAAGTTCATCGAGTGATATCGATCAGCGTGATAATCGGTACTGCTGCAATGAATTTTTGCGTGCGGCCTCGGCGGCGTAAGTTTGACCCAAGGCCCAAAAGGGCCACCGTCAAACCACCGCCGTCGAGGTAAGccc < 2:220615/149‑1 (MQ=255) tCGGACCTCAAGTTCATCGAGTGATATCGATCAGCGTGATAATCGGTACTGCTGCAATGAATTTTTGCGTGCGGCCTCGGCGGCGTAAGTTTGACCCAAGGCCCAAAAGGGCCACCGTCAAACCACCGCCGTCGAGGTAAGCCCAGAt > 4:116001/1‑148 (MQ=255) cTCAAGTTCATCGAGTGATATCGATCAGCGTGATAATCGGTACTGCTGCAATGAATTTTTGCGTGCGGCCTCGGCGGCGTAAGTTTGACCCAAGGCCCAAAAGGGCCACCGTCAAACCACCGCCGTCGAGGTAAGCCCAGATGAACtt > 7:169334/1‑148 (MQ=255) cAAGTTCATCGAGTGATATCGATCAGCGTGATAATCGGTACTGCTGCAATGAATTTTTGCGTGCGGCCTCGGCGGCGTAAGTTTGACCCAAGGCCCAAAAGGGCCACCGTCAAACCACCGCCGTCGAGGTAAGCCCAGATGAACTTCaa > 5:137885/1‑149 (MQ=255) cAAGTTCATCGAGTGATATCGATCAGCGTGATAATCGGTACTGCTGCAATGAATTTTTGCGTGCGGCCTCGGCGGCGTAAGTTTGACCCAAGGCCCAAAACGGCCACAGTCAAACCACCGCCGTCGAGGTAAGCCCAGATGAACTTCa > 1:322408/1‑148 (MQ=255) gTTCATCGAGTGATATCGATCAGCGTGATAATCGGTACTGCTGCAATGAATTTTTGCGTGCGGCCTCGGCGGCGTAAGTTTGACCCAAGGCCCAAAAGGGCCACCGTCAAACCACCGCCGTCGAGGTAAGCCCAGATGAACTTCAAtct > 3:230746/1‑149 (MQ=255) aTCGAGTGATATCGATCAGCGTGATAATCGGTACTGCTGCAATGAATTTTTGCGTGCGGCCTCGGCGGCGTAAGTTTGACCCAAGGCCCAAAAGGGCCACCGTCAAACCACCGCCGTCGAGGTAAGCCCAGATGAACTTCAATCTCTTc > 5:150/1‑149 (MQ=255) gAGTGATATCGATCAGCGTGATAATCGGTACTGCTGCAATGAATTTTTGCGTGCGGCCTCGGCGGCGTAAGTTTGACCCAAGGCCCAAAAGGGCCACCGTCAAACCACCGCCGTCGAGGTAAGCCCAGATGAACTTCAATCTCTTccc < 8:169334/148‑1 (MQ=255) gAGTGATATCGATCAGCGTGATAATCGGTACTGCTGCAATGAATTTTTGCGTGCGGCCTCGGCGGCGTAAGTTTGACCCAAGGCCCAAAAGGGCCACCGTCAAACCACCGCCGTCGAGGTAAGCCCAGATGAACTTCAATCTCTTCCCg > 8:77419/1‑149 (MQ=255) gTGATATCGATCAGCGTGATAATCGGTACTGCTGCAATGAATTTTTGCGTGCGGCCTCGGCGGCGTAAGTTTGACCCAAGGCCCAAAAGGGCCACCGTCAAACCACCGCCGTCGAGGTAAGCCCAGATGAACTTCAATCTCTTCCCGGt < 7:77419/149‑1 (MQ=255) tGATATCGATCAGCGTGATAATCGGTACTGCTGCAATGAATTTTTGCGTGCGGCCTCGGCGGCGTAAGTTTGACCCAAGGCCCAAAAGGGCCACCGTCAAACCACCGCCGTCGAGGTAAGCCCAGATGAAc < 6:256649/131‑1 (MQ=255) tGATATCGATCAGCGTGATAATCGGTACTGCTGCAATGAATTTTTGCGTGCGGCCTCGGCGGCGTAAGTTTGACCCAAGGCCCAAAAGGGCCACCGTCAAACCACCGCCGTCGAGGTAAGCCCAGATGAAc > 5:256649/1‑131 (MQ=255) tatCGATCAGCGTGATAATCGGTACTGCTGCAATGAATTTTTGCGTGCGGCCTCGGCGGCGTAAGTTTGACCAAAGGCACAAAAGGGCCACCGTCAAACCACCGCCGTCGAGGTAAGCCCAGATGAACTTCAATCTCTTACCGGTTAtt > 1:284243/1‑149 (MQ=255) atCGATCAGCGTGATAATCGGTACTGCTGCAATGAATTTTTGCGTGCGGCCTCGGCGGCGTAAGTTTGACCCAAGGCCCAAAAGGGCCACCGTCAAACCACCGCCGTCGAGGTAAGCCCAGATGAACTTCAATCTCTTCCCGGTTATTg > 4:277661/1‑149 (MQ=255) gTGATAATCGGTACTGCTGCAATGAATTTTTGCGTGCGGCCTCGGCGGCGTAAGTTTGACCCAAGGCCCAAAAGGGTCACCGTCAAACCACCGCCGTCGAGGTAAGCCCAGATGAACTTCAATCTCTTCCCGGTTATTGCCGCATCCGc > 7:3296/1‑149 (MQ=255) aTAATCGGTACTGCTGCAATGAATTTTTGCGTGCGGCCTCGGCGGCGTAAGTTTGACCCAAGGCCCAAAAGGGCCACCGTCAAACCACCGCCGTCGAGGTAAGCCCAGATGAACTTCAATCTCTTCCCGGTTATTGCCGCATCCGCCAt > 4:181844/1‑149 (MQ=255) aaTCGGTACTGCTGCAATGAATTTTTGCGTGCGGCCTCGGCGGCGTAAGTTTGACCCAAGGCCCAAAAGGGCCACCGTCAAACCACCGCCGTCGAGGTAAGCCCAGATGAACTTCAATCTCTTCACGGTTATTGCCGCATCCGCCAttt > 6:229045/1‑149 (MQ=255) tCGGTACTGCTGCAATGAATTTTTGCGTGCGGCCTCGGCGGCGTAAGTTTGACCCAAGGCCCAAAAGGGCCACCGTCAAACCACCGCCGTCGAGGTAAGCCCAGATg < 7:220747/107‑1 (MQ=255) tCGGTACTGCTGCAATGAATTTTTGCGTGCGGCCTCGGCGGCGTAAGTTTGACCCAAGGCCCAAAAGGGCCACCGTCAAACCACCGCCGTCGAGGTAAGCCCAGATg > 8:220747/1‑107 (MQ=255) tCGGTACTGCTGCAATGAATTTTTGCGTGCGGCCTCGGCGGCGTAAGTTTGACCCAAGGCCCAAAAGGGCCACCGTCAAACCACCGCCGTCGAGGTAAGCCCAGATGAACTTCAATCTCTTCCCGGTTATTGCCGCATCCGCCATTTcc > 4:173584/1‑149 (MQ=255) ggTACTGCTGCAATGAATTTTTGCGTGCGGCCTCGGCGGCGTAAGTTTGACCCAAGGCCCAAAAGGGCCACCGTCAAACCACCGCCGTCGAGGTAAGCCCAGATGAACTTCAATCTCTTCCCGGTTATTGCCGCATCCGCCATTTCCg < 3:318142/148‑1 (MQ=255) aCTGCTGCAATGAATTTTTGCGTGCGGCCTCGGCGGCGTAAGTTTGACCCAAGGCCCAAAAGGGCCACCGTCAAACCACCGCCGTCGAGGTAAGCCCAGATGAACTTCAATCTCTTCCCGGTTATTGCCGCATCCGCCATTTCCGCAt < 6:150/148‑1 (MQ=255) cAATGAATTTTTGCGTGCGGCCTCGGCGGCGTAAGTTTGACACAAGGCCCAAAAGGGCCACCGTCAAACCACCGCCGTCGAGGTAAGCCCAGATGAACTTCAATCTCTTCCCGGTTATTGCCGCATCCGCCATTTCCGCATCGGTCGTa > 7:70042/1‑149 (MQ=255) tGAATTTTTGCGTGCGGCCTCGGCGGCGTAAGTTTGACCCAAGGCCCAAAAGGGCCACCGTCAAACCACCGCCGTCGAGGTAAGCCCAGATGAACTTCAATCTCTTCCCGGTTATTGCCGCATCCGCCATTTCCGCATCGGTCGTACTg > 4:218940/1‑149 (MQ=255) gcgtgcgGCCTCGGCGGCGTAAGTTTGACCCAAGGCCCAAAAGGGCCACCGTCAAACCACCGCCGTCGAGGTAAGCCCAGATGAACTTCAATCTCTTCCCGGTTATTGCCGCATCCGCCATTTCCGCATCGGTCGTACTGCCAGCGca < 2:152182/148‑1 (MQ=255) gtgcgGCCTCGGCGGCTTAAGTTTGACCCAAGGCCCAAAAGGGCCACCGTCAAACCACCGCCGTCGAGGTAAGCCCAGATGAACTTCAATCTCTTCCCGGTTATTGCCGCATCCGCCATTTCCGCATCGGTCGTACTGCCAGCGcatgc < 1:112069/149‑1 (MQ=255) gtgcgGCCTCGGCGGCGTAAGTTTGACCCAAGGCCCAAAAGGGTCACCGTCAAACCACCGCCGTCGAGGTAAGCCCAGATGAACTTCAATCTCTTCCCGGTTATTGCCGCATCCGCCATTTCCGCATCGGTCGTACTGCCAGCGcatgc < 8:3296/149‑1 (MQ=255) ccTCGGCGGCGTAAGTTTGACCCAAGGCCCAAAGGGGCCACCGTCAAACCACCGCCGTCGAGGTAAGCCCAGATGAACTTCAATCTCTTCCCGGTTATTGCCGCATCCGCCATTTCCGCATCGGTCGTACTGCCAGCGcatgcccatgc < 1:258935/149‑1 (MQ=255) ccTCGGCGGCGTAAGTTTGACCCAAGGCCCAAAAGGGCCACCGTCAAACCACCGCCGTcgaggccgcacgcaaaaattcattgcagcagtaccgattatcacgctgatcgatatcactcgatgaacttgaggtccgagggtgcatcctg < 4:8438‑M2/149‑92 (MQ=255) tCGGCGGCGTAAGTTTGACCCAAGGCCCAAAAGGGCCACCGTCAAACCACCGCCGTcgaggccgcacgcaaaaattcattgcagcagtaccgattatcacgctgatcgatatcactcgatgaacttgaggtccgagggtgcatccagat < 3:2140‑M2/149‑94 (MQ=255) tCGGCGGCGTAAGTTTGACCCAAGGCCCAAAAGGGCCACCGTCAAACCACCGCCGTcgaggccgcacgcaaaaattcattgcagcagtaccgattatcacgctgatcgatatcactcgatgaacttgaggtccgagggtgcatc > 4:2140‑M2/1‑56 (MQ=255) ggcggcGTAAGTTTGACCCAAGGCCCAATAGGGCCTCCGTCAAACCACCGCTGGCGAGGTAAGCCCAGATGAACTTCAATCTCTTCCCGGTTATTGCCGCATCGGCAATTTCCGCATCGGTCGTACTGCCAGCGCTTGCCCATGCCGa < 2:322408/148‑1 (MQ=255) ggcgTAAGTTTGACCCAAGGCCCAAAAGGGCCACCGTCAAACCACCGCCGTCGAGGTAAGCCCAGATGAACTTCAATCTCTTCCCGGTTATTGCCGCATCCGCCATTTCCGCATCGGTCGTACTGCCAGCGCATGCCCATGCCGAcag > 1:11578/1‑148 (MQ=255) gTTTGACCCAAGGCCCAAAAGGGCCACCGTCAAACCACCGCCGTCGAGGTAAGCCCAGATGAACTTCAATCTCTTCCCGGTTATTGCCGCATCCGCCATTTCCGCATCGGTCGTACTGCCAGCGcatgcccat > 5:201761/1‑133 (MQ=255) gTTTGACCCAAGGCCCAAAAGGGCCACCGTCAAACCACCGCCGTCGAGGTAAGCCCAGATGAACTTCAATCTCTTCCCGGTTATTGCCGCATCCGCCATTTCCGCATCGGTCGTACTGCCAGCGcatgcccat < 6:201761/133‑1 (MQ=255) ttGACCCAAGGCCCAAAAGGGCCACCGTCAAACCACCGCCGTCGAGGTAAGCCCAGATGAACTTCAATCTCTTCCCGGTTATTGCCGCATCCGCCATTTCCGCATCGGTCGTACTGCCAGCGCATGCCCATGCCGACAGCAGCAAGGCt > 3:183541/1‑149 (MQ=255) aCCCAAGGCCCAAAAGGGCCACCGTCAAACCACCGCCGTCGAGGTAAGCCCAGATGAACTTCAATCTCTTCCCGGTTATTGCCGCATCCGCCATTTCCGCATCGGTCGTACTGCCAGCGCATGCCCATGCCGACAGCAGCAAGGCTTCt < 3:72944/149‑1 (MQ=255) aCCCAAGGCCCAAAAGGGCCACCGTCAAACCACCGCCGTCGAGGTAAGCCCAGATGAACTTCAATCTCTTCCCGGTTATTGCCGCATCCGCCATTTCCGCATCGGTCGTACTGCCAGCGCATGCCCATGCCGACAGCAGCAAGGCTTCt > 3:259813/1‑149 (MQ=255) aCCCAAGGCCCAAAAGGGCCACCGTCAAACCACCGCCGTCGAGGTAAGCCCAGATGAACTTCAATCTCTTCCCGGTTATTGCCGCATCCGCCATTTCCGCATCGGTCGTACTGCCAGCGCATGCCCATGCCGACAGCAGCAAGGCTTCt < 5:229045/149‑1 (MQ=255) aCCCAAGGCCCAAAAGGGCCACCGTCAAACCACCGCCGTCGAGGTAAGCCCAGATGAACTTCAATCTCTTCCCGGTTATTGCCGCATCCGCCATTTCCGCATCGGTCGTACTGCCAGCGCATGCCCATGCCGACAGCAGCAAGGCTTCt < 4:230746/149‑1 (MQ=255) cAAGGCCCAAAAGGGCCACCGTCAAACCACCGCCGTCGAGGTAAGCCCAGATGAACTTCAATCTCTTCCCGGTTATTGCCGCATCCGCCATTTCCGCATCGGTCGTACTGCCAGCGCATGCCCATGCCGACAGCAGCAAGGCTTCTGc > 5:306532/1‑148 (MQ=255) cccAAAAGGGCCACCGTCAAACCACCGCCGTCGAGGTAAGCCCAGATGAACTTCAATCTCTTCCCGGTTATTGCCGCATCCGCCATTTCCGCATCGGTCGTAc > 2:211526/1‑103 (MQ=255) cccAAAAGGGCCACCGTCAAACCACCGCCGTCGAGGTAAGCCCAGATGAACTTCAATCTCTTCCCGGTTATTGCCGCATCCGCCATTTCCGCATCGGTCGTAc < 1:211526/103‑1 (MQ=255) cccAAAAGGGCCACCGTCAAACCACCGCCGTCGAGGTAAGCCCAGATGAACTTCAATCTCTTCCCGGTTATTGCCGCATCCGCCATTTCCGCATCGGTCGTACTGCCAGCGCATGCCCATGCCGACAGCAGCAAGGCTTCTGccaccca > 5:77662/1‑149 (MQ=255) aaaaGGGCCACCGTCAAACCACCGCCGTCGAGGTAAGCCCAGATGAACTTCAATCTCTTCCCGGTTATTGCCGCATCCGCCATTTCCGCATCCGTCGTACTGCCAGCGCATGCCCATGCCGACAGCAGCAAGGCTTCTGCCACCCACAg > 8:176137/1‑149 (MQ=255) aGGGCCACCGTCAAACCACCGCCGTCGAGGTAAGCCCAGATGAACTTCAATCTCTTCCCGGTTATTGCCGCATCCGCCATTTCCGCATCGGTCGTACTGCCAGCGCATGCCCATGCCGACAGCAGCAAGGCTTCTGCCACCCACAGCTa < 6:306532/149‑1 (MQ=255) ggCCACCGTCAAACCACCGCCGTCGAGGTAAGCCCAGATGAACTTCAATCTCTTCCCGGTTATTGCCGCATCCGCCATTTCCGCATCGGTCGTACTGCCAGCGCATGCCCATGCCGACAGCAGCAAGGCTTCTGCCACCCACAGCTaca < 4:259813/149‑1 (MQ=255) gTCAAACCACCGCCGTCGAGGTAAGCCCAGATGAACTTCAATCTCTTCCCGGTTATTGCCGCATCCGCCATTTCCGCATCGGTCGTACTGCCAGCGCATGCCCATGCCGACAGCAGCAAGGCTTCTGCCACCCACAGCTACACCGAg > 8:229145/1‑147 (MQ=255) aaCCACCGCCGTCGAGGTAAGCCCAGATGAACTTCAATCTCTTCCCGGTTATTGCCGCATCCGCCATTTCCGCATCGGTCGTACTGCCAGCGCATGCCCATGCCGACAGCAGCAAGGCTTCTGCCACCCACAGCTACACCGAGCAGTAc > 7:1934/1‑149 (MQ=255) aaCCACCGCCGTCGAGGTAAGCCCAGATGAACTTCAATCTCTTCCCGGTTATTGCCGCATCCGCCATTTCCGCATCGGTCGTACTGCCAGCGCATGCCCATGCCGACAGCAGCAAGGCTTCTGCCACCCACAGCTACACCGAGCAGTAc < 7:229145/149‑1 (MQ=255) aaCCACCGCCGTCGAGGTAAGCCCAGATGAACTTCAATCTCTTCCCGGTTATTGCCGCATCCGCCATTTCCGCATCGGTCGTACTGCCAGCGCATGCCCATGCCGACAGCAGCAAGGCTTCTGCCACCCACAGCTACACCGAGCAGTAc > 3:130495/1‑149 (MQ=255) ccaccGCCGTCGAGGTAAGCCCAGATGAACTTCAATCTCTTCCCGGTTATTGCCGCATCCGCCATTTCCGCATCGGTCGTACTGCCAGCGCATGCCCATGCCGACAGCAGCAAg > 7:191103/1‑114 (MQ=255) ccaccGCCGTCGAGGTAAGCCCAGATGAACTTCAATCTCTTCCCGGTTATTGCCGCATCCGCCATTTCCGCATCGGTCGTACTGCCAGCGCATGCCCATGCCGACAGCAGCAAg < 8:191103/114‑1 (MQ=255) accGCCGTCGAGGTAAGCCCAGATGAACTTCAATCTCTTCCCGGTTATTGCCGCATCCGCCATTTCCGCATCGGTCGTACTGCCAGCGCATGCCCATGCCGACAGCAGCAAGGCTTCTGCCACCCACAGCTACACCGAGCAGTACCTgc > 4:21809/1‑149 (MQ=255) ccgccgTCGAGGTAAGCCCAGATGAACTTCAATCTCTTCCCGGTTATTGCCGCATCCGCCATTTCCGCATCGGTCGTACTGCCAGCGCATGCCCATGCCGACAGCAGCAAGGCTTCTGCCACCCACAGCTACACCGAGCAGTACCTgcg > 7:49079/1‑149 (MQ=255) gccgTCGAGGTAAGCCCAGATGAACTTCAATCTCTTCCCGGTTATTGCCGCATCCGCCATTTCCGCATCGGTCGTACTGCCAGCGCATGCCCATGCCGACAGCAGCAAGGCTTCTGCCACCCACAGCTACACCGAGCAGTACCTGCGcc < 6:77662/149‑1 (MQ=255) gTCGAGGTAAGCCCAGATGAACTTCAATCTCTTCCCGGTTATTGCCGCATCCGCCATTTCCGCATCGGTCGTACTGCCAGCGCATGCCCATGCCGACAGCAGCAAGGCTTCTGCCACCCACAGCTACACCGAGCAGTACCTGCGCCa > 5:88510/1‑147 (MQ=255) tCGAGGTAAGCCCAGATGAACTTCAATCTCTTCCCGGTTATTGCCGCATCCGCCATTTCCGCATCGGTCGTACTGCCAGCGCATGCCCATGCCGACAGCAGCAAGGCTTCTGCCACCCACAGCTACACCGAGCAGTACCTGCGCCagag < 2:11578/149‑1 (MQ=255) | AGCAGGATGCACCCTCGGACCTCAAGTTCATCGAGTGATATCGATCAGCGTGATAATCGGTACTGCTGCAATGAATTTTTGCGTGCGGCCTCGGCGGCGTAAGTTTGACCCAAGGCCCAAAAGGGCCACCGTCAAACCACCGCCGTCGAGGTAAGCCCAGATGAACTTCAATCTCTTCCCGGTTATTGCCGCATCCGCCATTTCCGCATCGGTCGTACTGCCAGCGCATGCCCATGCCGACAGCAGCAAGGCTTCTGCCACCCACAGCTACACCGAGCAGTACCTGCGCCAGAG > NC_002947/2295418‑2295711 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |