New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 2505333	32 (0.610)	4 (0.080)	4/252	NT	10.6%	coding (1120/1146 nt)	yliI	aldose sugar dehydrogenase
	?	NC_002947	= 2505360	37 (0.750)					intergenic (+1/‑41)	yliI/PP_2199	aldose sugar dehydrogenase/hypothetical protein

GCAGGAATTGATCCGCTTGCAACTGGATGGCGACAAGGTGGTGCACGAAGAGCGGTTGCTCGGTGACCTGAAGGCGCGTATCCGTGATGTGCGGGTGGGGCCAGATGGTTACCTGTATGTACTGACCGATGACAAGGATGGCGCGCTACTCAAGGTCGGCCTGGCCGACTGACGCGCG‑CCTGCACCGAGGGTGACAGTCGGGTAGAATGCGGCATGGCCCTCGACCCCCAAACCCTCTACCAGCAAGCCCTGAGCACTCGGGGCTACGTTGCTGACCCTGCCCAGGCCCGC  >  NC_002947/2505188‑2505478                                                                                                                                                  |                                                                                                                                                   gCAGGAATTGATCCGCTTGCAACTGGATGGCGACAAGGTGGTGCACGAAGAGCGGTTGCTCGGTGACCTGAAGGCGCGTATCCGTGATGTGCGGGTGGGGCCAGATGGTTACCTGTATGTACTGACCGATGACAAGGATGGCGCGCTAc                                                                                                                                                 >  7:20592/1‑149 (MQ=255)               gCTTGCAACTGGATGGCGACAAGGTGGTGCACGAAGAGCGGTTGCTCGGTGACCTGAAGGCGCGTATCCGTGATGTGCGGGTGGGGCCAGATGGTTACCTGTATGTACTGACCGATGACAAGGATGGCGCGCTACTCAAGGTCGGCCTg                                                                                                                                   <  7:34407/149‑1 (MQ=255)                   gCAACTGGATGGCGACAAGGTGGTGCACGAAGAGCGGTTGCTCGGTGACCTGAAGGCGCGTATCCGTGATGTGCGGGTGGGGCCAGATGGTTACCTGTATGTACTGACCGATGACAAGGATGGCGCGCTACTCAAGGTCGGCCTGGc                                                                                                                                 <  8:86333/147‑1 (MQ=255)                     aaCTGGATGGCGACAAGGTGGTGCACGAAGAGCGGTTGCTCGGTGACCTGAAGGCGCGTATCCGTGATGTGCGGGTGGGGCCAGATGGTTACCTGTATGTACTGACCGATGACAAGGATGGCGCGCgtcagtcggccaggccgacctt                                                                                                                              >  3:318021‑M1/1‑126 (MQ=255)                     aaCTGGATGGCGACAAGGTGGTGCACGAAGAGCGGTTGCTCGGTGACCTGAAGGCGCGTATCCGTGATGTGCGGGTGGGGCCAGATGGTTACCTGTATGTACTGACCGATGACAAGGATGGCGCGCTACTCAAGGTCGGCCTGGCCGAc                                                                                                                             >  6:8480/1‑149 (MQ=255)                     aaCTGGATGGCGACAAGGTGGTGCACGAAGAGCGGTTGCTCGGTGACCTGAAGGCGCGTATCCGTGATGTGCGGGTGGGGCCAGATGGTTACCTGTATGTACTGACCGATGACAAGGATGGCGCGCTACTCAAGGTCGGCCTGGCCGAc                                                                                                                             <  2:117103/149‑1 (MQ=255)                          gATGGCGACAAGGTGGTGCACGAAGAGCGGTTGCTCGGTGACCTGAAGGCGCGTATCCGTGATGTGCGGGTGGGGCCAGATGGTTACCTGTATGTACTGACCGATGACAAGGATGGCGCGCTACTCAAGGTCGGCCTGGCCGACTGAc                                                                                                                         <  5:8480/148‑1 (MQ=255)                          gATGGCGACAAGGTGGTGCACGAAGAGCGGTTGCTCGGTGACCTGAAGGCGCGTATCCGTGATGTGCGGGTGGGGCCAGATGGTTACCTGTATGTACTGACCGATGACAAGGATGGCGCGCTACTCAAGGTCGGCCAGGCCGAcctt                                                                                                                          <  3:76460/147‑4 (MQ=255)                               cGACAAGGTGGTGCACGAAGAGCGGTTGCTCGGTGACCTGAAGGCGCGTATCCGTGATGTGCGGGTGGGGCCAGATGGTTACCTGTATGTACTGACCGATGACAAGGATGGCGCGCgtcagtcggccaggccgaccttgagtagcgcgc                                                                                                                   <  4:318021‑M1/149‑34 (MQ=255)                                    aGGTGGGGCACGAAGAGCGGTTGCTCGGTGACCTGAAGGCGCGTATCCGTGATGTGCGGGTGGGGCCAGATGGTTACCTGTATGTACTGACCGATGACAAGGATGGCGCGCgtcagtcggccaggccgaccttgagtagcgcgccatcc                                                                                                              <  7:9459‑M1/149‑39 (MQ=255)                                      gtggtgCACGAAGAGCGGTTGCTCGGTGACCTGAAGGCGCGTATCCGTGATGTGCGGGTGGGGCCAGATGGTTACCTGTATGTACTGACCGATGACAAGGATGGCGCGCgtcagtcggccaggccgaccttgagtagcgcgccatcctt                                                                                                            <  4:306510‑M1/149‑41 (MQ=255)                                            cACGAAGAGCGGTTGCTCGGTGACCTGAAGGCGCGTATCCGTGATGTGCGGGTGGGGCCAGATGGTTACCTGTATGTACTGACCGATGACAAGGATGGCGCGCTACTCAAGGTCGGCCTGGCCGGCTGACGCGCG‑CCTGCACCGAGGGt                                                                                                     >  8:82535/1‑149 (MQ=255)                                              cGAAGAGCGGTTGCTCGGTGACCTGAAGGCGCGTATCCGTGATGTGCGGGTGGGGCCAGATGGTTACCTGTATGTACTGACCGATGACAAGGATGGCGCGCTACTCAAGGTCGGCCTGGCCGACTGACGCGCG‑CCTGCACCGAGGGTGa                                                                                                   <  5:284289/149‑1 (MQ=255)                                               gAAGAGCGGTTGCTCGGTGACCTGAAGGCGCGTATCCGTGATGTGCGGGTGGGGCCAGATGGTTACCTGTATGTACTGACCGATGACAAGGATGGCGCGCTACTCAAGGTCGGCCTGGCCGACTGACGCGCG‑CCTGCACCGAGGGTGa                                                                                                   >  1:106896/1‑148 (MQ=255)                                                    gCGGTTGCTCGGTGACCTGAAGGCGCGTATCCGTGATGTGCGGGTGGGGCCAGATGGTTACCTGTATGTACTGACCGATGACAAGGATGGCGCGCTACTCAAGGTCGGCCTGGCCGACTGACGCGCG‑CCTGCACCGAGGGTGACAGTCg                                                                                             <  3:102297/149‑1 (MQ=255)                                                              ggTGACCTGAAGGCGCGTATCCGTGATGTGCGGGTGGGGCCAGATGGTTACCTGTATGTACTGACCGATGACAAGGATGGCGCGCTACTCAAGGTCGGCCTGGCCGACTGACGCGCG‑CCTGCACCGAGGGTGACAGTCGGGTAGAAt                                                                                     <  1:296547/147‑1 (MQ=255)                                                                  aCCTGAAGGCGCGTATCCGTGATGTGCGGGTGGGGCCAGATGGTTACCTGTATGTACTGACCGATGACAAGGATGGCGCGCTACTCAAGGTCGGCCTGGCCGACTGACGCGCGCCCTGCACCGAGGGTGACAGTCGGGTAGAATGCGGc                                                                                <  1:48567/149‑1 (MQ=255)                                                                    cTGAAGGCGCGTATCCGTGATGTGCGGGTGGGGCCAGATGGTTACCTGTATGTACTGACCGATGACAAGGATGGCGCGCTACTCAAGGTCGGCCTGGCCGACTGACGCGCG‑CCTGCACCGAGGGTGACAGTc                                                                                              >  3:116986/1‑132 (MQ=255)                                                                    cTGAAGGCGCGTATCCGTGATGTGCGGGTGGGGCCAGATGGTTACCTGTATGTACTGACCGATGACAAGGATGGCGCGCTACTCAAGGTCGGCCTGGCCGACTGACGCGCG‑CCTGCACCGAGGGTGACAGTc                                                                                              <  4:116986/132‑1 (MQ=255)                                                                    cTGAAGGCGCGTATCCGTGATGTGCGGGTGGGGCCAGATGGTTACCTGTATGTACTGACCGATGACAAGGATGGCGCGCTACTCAAGGTCGGCCTGGCCGACTGACGCGCG‑CCTGCACCGAGGGTGACAGTCGGGTAGAATGCGGCATg                                                                             >  2:176347/1‑149 (MQ=255)                                                                       aaGGCGCGTATCCGTGATGTGCGGGTGGGGCCAGATGGTTACCTGTATGTACTGACCGATGACAAGGATGGCGCGCTACTCAAGGTCGGCCTGGCCGACTGACGCGCG‑CCTGCACCGAGGGTGACAGTCGGGTAGAATGCGGCATgg                                                                            <  2:148620/147‑1 (MQ=255)                                                                           cgcgTATCCGTAATGTGCGGGTGGGGCCAGATGGTTACCTGTATGTACTGACCGATGACAAGGATGGCGCGCTACTCAAGGTCGGCCTGGCCGACTGACGCGCG‑CCTGCACCGAGGGTGACAGTCGGGTAGAATGCGGCATGGCCCTCg                                                                      <  6:215815/149‑1 (MQ=255)                                                                                 tCCGTGATGTGCGGGTGGGGCCAGATGGTTACCTGTATGTACTGACCGATGACAAGGATGGCGCGCTACTCAAGGTCGGCCTGGCCGACTGACGCGCG‑CCt                                                                                                                >  4:40473/1‑101 (MQ=255)                                                                                          tgCGGGTGGGGCCAGATGGTTACCTGTATGTACTGACCGATGACAAGGATGGCGCGCTACTCAAGGTCGGCCTGGCCGACTGACGCGCG‑CCTGCACCGAGGGTGACAGTCGGGTAGAATGCGGCATGGCCCTCGACCCCCAAACCctc                                                        <  8:20592/148‑1 (MQ=255)                                                                                             gggTGGGGCCAGATGGTTACCTGTATGTACTGACCGATGACAAGGATGGCGCGCTACTCAAGGTCGGCCTGGCCGACTGACGCGCG‑CCTGCACCGAGGGTGACAGTCGGGTAGAATGCGGCATGGCCCTCGACCCCCAAACCCTCTAcc                                                    <  5:110350/149‑1 (MQ=255)                                                                                                            gTTACATGTATGTACTGACCGATGACAAGGATGGCGCGCTACTCAAGGTCGGCCTGGCCGACTGACGCGCG‑CCTGCACCGAGGGTGACAGTCGGGTAGAATGCGGCATGGCCCTCGACCCCCAAACCCTCTACCAGCAAGCCCTGAGCa                                     >  5:224027/1‑149 (MQ=255)                                                                                                                 cTGTATGTACTGACCGATGACAAGGATGGCGCGCTACTCAAGGTCGGCCTGGCCGACTGACGCGCG‑CCTGCACCGAGGGTGACAGTCGGGTAGAATGCGGCATGGCCCTCGACCCCCAAACCCTCTACCAGCAAGCCCTGAGCACTCgg                                <  7:67161/149‑1 (MQ=255)                                                                                                                   gtatgtaCTGACCGATGACAAGGATGGCGCGCTACTCAAGGTCGGCCTGGCCGACTGACGCGCG‑CCTGCACCGAGGGTGACAGTCGGGTAGAATGCGGCATGGCCCTCGACCCCCAAACCCTCTACCAGCAAGCCCt                                          <  1:155235/137‑1 (MQ=255)                                                                                                                   gtatgtaCTGACCGATGACAAGGATGGCGCGCTACTCAAGGTCGGCCTGGCCGACTGACGCGCG‑CCTGCACCGAGGGTGACAGTCGGGTAGAATGCGGCATGGCCCTCGACCCCCAAACCCTCTACCAGCAAGCCCt                                          >  2:155235/1‑137 (MQ=255)                                                                                                                    tatgtaCTGACCGATGACAAGGATGGCGCGCTACTCAAGGTCGGCCTGGCCGACTGACGCGCG‑CCTGCACCGAGGGTGACAGTCGGGTAGAATGCGGCATGGCCCTCGACCCCCAAACCCTCTACCAGCAAGCCCTGAGCACTCGGGGc                             >  1:180814/1‑149 (MQ=255)                                                                                                                             aCCGATGACAAGGATGGCGCGCTACTCAAGGTCGGCCTGGCCGACTGACGCGCG‑CCTGCACCGAGGGTGACAGTCGGGTAGAATGCGGCATGGCCCTCGACCCCCAAACCCTCTACCAGCAAGCCCTGa                                        <  7:215890/129‑1 (MQ=255)                                                                                                                             aCCGATGACAAGGATGGCGCGCTACTCAAGGTCGGCCTGGCCGACTGACGCGCG‑CCTGCACCGAGGGTGACAGTCGGGTAGAATGCGGCATGGCCCTCGACCCCCAAACCCTCTACCAGCAAGCCCTGa                                        >  8:215890/1‑129 (MQ=255)                                                                                                                             aCCGATGACAAGGATGGCGCGCTACTCAAGGTCGGCCTGGCCGACTGACGCGCG‑CCTGCACCGAGGGTGACAGTCGGGTAGAATGCGGCATGGCCCTCGACCCCCAAACCCTCTACCAGCAAGCCCTGAGCACTCGGGGCTACGTTg                      <  8:166036/147‑1 (MQ=255)                                                                                                                                  tGACAAGGATGGCGCGCTACTCAAGGTCGGCCTGGCCGACTGACGCGCG‑CCTGCACCGAGGGTGACAGTCGGGTAGAATGCGGCATGGCCCTCGACCCCCAAACCCTCTACCAGCAAGCCCTGAGCACTCGGGGCTACGTTGCTGAccc               >  2:188513/1‑149 (MQ=255)                                                                                                                                  tGACAAGGATGGCGCGCTACTCAAGGTCGGCCTGGCCGACTGACGCGCG‑CCTGCACCGAGGGTGACAGTCGGGTAGAATGCGGCATGGCCCTCGACCCCCAAACCCTCTACCAGCAAGCCCTGAGCACTCGGGGCTACGTTGCTGAccc               >  8:71701/1‑149 (MQ=255)                                                                                                                                     cAAGGATGGCGCGCTACTCAAGGTCGGCCTGGCCGACTGACGCGCG‑CCTGCACCGAGGGTGACAGTCGGGTAGAATGCGGCATGGCCCTCGACCCCCAAACCCTCTCCCAGCAAGCCCTGAGCCCTCGGGGGTACGTTGCTGACCGTGc            >  8:229698/1‑149 (MQ=255)                                                                                                                                      aaGGATGGCGCGCTACTCAAGGTCGGCCTGGCCGACTGACgcgcgccatccttgtcatcggtcagtacatacaggtaaccatctggccccacccgcacatcacggatacgcgccttcaggtcaccgagcaaccgctcttcgtgcaccac            <  4:306510‑M2/149‑110 (MQ=255)                                                                                                                                      aaGGATGGCGCGCTACTCAAGGTCGGCCTGGCCGACTGACGCGCG‑CCTGCACCGAGGGTGACAGTCGGGTAGAAt                                                                                     <  8:140222/75‑1 (MQ=255)                                                                                                                                        ggATGGCGCGCTACTCAAGGTCGGCCTGGCCGACTGACgcgcgccatccttgtcatcggtcagtacatacaggtaaccatctggccccacccgcacatcacggatacgcgccttcaggtcaccgagcaaccgctcttcgtgccccacct          <  7:9459‑M2/149‑112 (MQ=255)                                                                                                                                             gcgcgcTACTCAAGGTCGGCCTGGCCGACTGACgcgcgccatccttgtcatcggtcagtacatacaggtaaccatctggccccacccgcacatcacggatacgcgccttcaggtcaccgagcaaccgctcttcgtgcaccaccttgtcg     <  4:318021‑M2/149‑117 (MQ=255)                                                                                                                                              cgcgcTACTCAAGTTCGGCCTGGCCGACTGACGCGCG‑CCTGCACCGATGGTGACAGTCGGGTAGAATGCg                                                                                  <  1:219162/70‑1 (MQ=255)                                                                                                                                              cgcgcTACTCAAGGTCGGCCTGGCCGACTGACGCGCG‑CCTGCACCGAGGGTGACAGTCGGGTAGAATGCg                                                                                  >  2:219162/1‑70 (MQ=255)                                                                                                                                               gcgcTACTCAAGGTCGGCCTGGCCGACTGACGCGCG‑CCTGCACCGAGGGTGACAGTCGGGTAGAATGCGGCATGGCCCTCGACCCCCAAACCCTCTACCAGCAAGCCCTGAGCACTCGGGGCTACGTTGCTGACCCTGCCCAGGCCcgc  >  7:178422/1‑149 (MQ=255)                                                                                                                                               gagcTACTCAAGGTCGGCCTGGCCGACTGACGAGCG‑CCTGCACCGAGGGTGACAGTCGGGTAGAATGCGGCATGGCCCTCGACCCCCAACCACTCTTCCAGCAAGCCCAGCGCCCTCGCGGGTACGTTGCTGCCCCTGACAAGGCCagc  >  1:307750/3‑149 (MQ=255)                                                                                                                                                  |                                                                                                                                                   GCAGGAATTGATCCGCTTGCAACTGGATGGCGACAAGGTGGTGCACGAAGAGCGGTTGCTCGGTGACCTGAAGGCGCGTATCCGTGATGTGCGGGTGGGGCCAGATGGTTACCTGTATGTACTGACCGATGACAAGGATGGCGCGCTACTCAAGGTCGGCCTGGCCGACTGACGCGCG‑CCTGCACCGAGGGTGACAGTCGGGTAGAATGCGGCATGGCCCTCGACCCCCAAACCCTCTACCAGCAAGCCCTGAGCACTCGGGGCTACGTTGCTGACCCTGCCCAGGCCCGC  >  NC_002947/2505188‑2505478

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.