New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3528142	40 (0.770)	5 (0.100)	4/252	NT	11.6%	coding (1353/1419 nt)	imuB	DNA repair DNA linked protein
	?	NC_002947	= 3528169	38 (0.770)					coding (1380/1419 nt)	imuB	DNA repair DNA linked protein

GGGGTGGCTGTTGTCGGCACCGATCGCGCTGGATGACGCCGCCTACCAGGTGCAGGGCTATGCCGAACGCATCGAATCAGGTTGGTGGGATGGCGGCGATGTGCGTCGCGACTACTACCGCATCGAAACCCGTGACGGCCTGCGCGGCTGGGCCTACCGCGACCTGAGCCAGGCCGGTCCGCTTTGGCTGCAGGGTTGGTTCGCATGAACACCCCGGGTTATGCCGAGCTGCATTGCCTTTCCAACTTCAGCTTCCAGCGCGGTGCGTCGAGCGCCGACGAGCTG  >  NC_002947/3528001‑3528285                                                                                                                                              |                                                                                                                                                ggggTGGCTGTTGTCGGCACCGATCGCGCTGGATGACGCCGCCTACCAGGTGCAGGGCTATGCCGAACGCATCGAATCAGGTTGGTGGGATGGCGGCGATGTGCGTCGCGACTACTACCGCATCGAAACCCGTGACGGCCTGCGCGGCt                                                                                                                                          <  6:55710/149‑1 (MQ=255) ggggTGGCTGTTGTCGGCACCGATCGCGCTGGATGACGCCGCCTACCAGGTGCAGGGCTATGCCGAACGCATCGAATCAGGTTGGTGGGATGGCGGCGATGTGCGTCGCGACTACTACCGCATCGAAACCCGTGACGGCCTGCGCGGCt                                                                                                                                          <  4:65019/149‑1 (MQ=255)   ggTGGCTGTTGTCGGCACCGATCGCGCTGGCTGACGGCGCCTACCAGGTGCAGGGCTATGCCGAACGCATCGAATCAGGTTGGTGGGATGGCGGCGATGTGCGTCGCGACTACTACCGCATCGAATCCCGTGACGGCCTGCGCGGCTgg                                                                                                                                        <  7:252529/149‑1 (MQ=255)   ggTGGCTGTTGTCGGCACCGATCGCGCTGGATGACGCCGCCTACCAGGTGCAGGGCTATGCCGAACGCATCGAATCAGGTTGGTGGGATGGCGGCGATGTGCGTCGCGACTACTACCGCATCGAAACCCGTGACGGCCTGCGCGGCTgg                                                                                                                                        <  5:161565/149‑1 (MQ=255)    gTGGCTGTTGTCGGCACCGATCGCGCTGGATGACGCCGCCTACCAGGTGCAGGGCTATGCCGAACGCATCGAATCAGGTTGGTGGGATGGCGGCGATGTGCGTCGCGACTACTACCGCATCGAAACCCGTGACGGCCTGCGCGGCTggg                                                                                                                                       <  8:179190/149‑1 (MQ=255)       gCTGTTGTCGGCACCGATCGCGCTGGATGACGCCGCCTACCAGGTGCAGGGCTATGCCGAACGCATCGAATAAGGTTGGTGGGATGGCGGCGATGTGCGTCGCGACTACTACCGCATCGAAACCCGTGACGGCCTGCGCGGCTGGGcc                                                                                                                                     >  1:305860/1‑148 (MQ=255)         tgttgtCGGCACCGATCGCGCTGGATGACGCCGCCTACCACGTGCAGGGCTATGCCGAACGCATCGAATCAGGTTCGTGGGATCGCGCCGATGTGCGTCGCGACTACTACCGCATCGAAACCCGAGACGGCCTCCGCCGCTGGCCCTAc                                                                                                                                  >  8:206528/1‑149 (MQ=255)                ggCACCGATCGCGCTGGATGACGCCGCCTACCAGGTGCAGGGCTATGCCGAACGCATCGAATCAGGTTGGTGGGATGGCGGCGATGTGCGTCGTGACTACTACCGCATCGAAACCCGCGACGGCCTGCGCGGCTGGGCCTACCGCGAc                                                                                                                            <  2:45136/148‑1 (MQ=255)                 gCACCGATCGCGCTGGATGACGCCGCCTACCAGGTGCAGGGCTATGCCGAACGCATCGAATCAGGTTGGTGGGATGGCGGCGATGTGCGTCGCGACTACTACCGCATCGAAACCCGTGACGGCCTGgctcaggtcgcggtaggcccagc                                                                                                                          >  1:325133‑M1/1‑126 (MQ=255)                  cACCGATCGCGCTGGATGACGCCGCCTACCAGGTGCAGGGCTATGCCGAACGCATCGAATCAGGTTGGTGGGATGGCGGCGATGTGCGTCGCGACTACTACCGCATCGAAACCCGTGACGGCCTGCGCGGCTGGGCCTACCGCGACCt                                                                                                                          >  1:171138/1‑148 (MQ=255)                           cgcTGGATGACGCCGCCTACCAGGTGCAGGGCTATGCCGAACGCATCGAATCAGGTTGGTGGGATGGCGGCGATGTGCGTCGCGACTACTACCGCATCGAAACCCGTGACGGCCTGgctcaggtcgcggtaggcccagccgcgcaggcc                                                                                                                <  5:207078‑M1/149‑34 (MQ=255)                           cgcTGGATGACGCCGCCTACCAGGTGCAGGGCTATGCCGAACGCATCGAATCAGGTTGGTGGGATGGCGGCGATGTGCGTCGCGACTACTACCGCATCGAAACCCGTGACGGCCTGCGCGGCTGGGCCTAcc                                                                                                                                 <  3:178015/132‑1 (MQ=255)                           cgcTGGATGACGCCGCCTACCAGGTGCAGGGCTATGCCGAACGCATCGAATCAGGTTGGTGGGATGGCGGCGATGTGCGTCGCGACTACTACCGCATCGAAACCCGTGACGGCCTGCGCGGCTGGGCCTAcc                                                                                                                                 >  4:178015/1‑132 (MQ=255)                                gATGACGCCGCCTACCAGGTGCAGGGCTATGCCGAACGCATCGAATCAGGTTGGTGGGATGGCGGCGATGTGCGTCGCGACTACTACCGCATCGAAACCCGTGACGGCCTGgctcaggtcgcggtaggcccagccgcgcaggccgtcac                                                                                                           <  6:117479‑M1/149‑39 (MQ=255)                                gATGACGCCGCCTACCAGGTGCAGGGCTATGCCGAACGCATCGAATCAGGTTGGTGGGATGGCGGCGATGTGCGTCGCGACTACTACCGCATCGAAACCCGTGACGGCCTGgctcaggtcgcggtaggcccagccgcgcaggccgtcac                                                                                                           <  2:325133‑M1/149‑39 (MQ=255)                                gATGACGCCGCCTACCAGGTGCAGGGCTATGCCGAACGCATCGAATCAGGTTGGTGGGATGGCGGCGATGTGCGTCGCGACTACTACCGCATCGAAACCCGTGACGGCCTGgctcaggtcgcggtaggcccagccgcgcaggccgtca                                                                                                            <  4:231572‑M1/148‑38 (MQ=255)                                    aCGCCGCCTACCAGGTGCAGGGCTATGCCGAACGCATCGAATCAGGTTGGTGGGATGGCGGCGATGTGCGTCGCGACTACTACCGCATCGAAACCCGTGACGGCCTGCGCGGCTGGGCCTACCGCGACCTGAGCCAGGCCGGTCCGCtt                                                                                                       <  1:9289/149‑1 (MQ=255)                                      gccgccTACCAGGTGCAGGGCTATGCCGAACGCATCGAATCAGGTTGGTGGGATGGCGGCGATGTGCGTCGCGACTACTACCGCATCGAAACCCGTGACGGCCTGCGCGGCTGGGCCTACCGCGACCTGAGCCAGGCCGGTCCGCTTTg                                                                                                     >  6:32732/1‑149 (MQ=255)                                          ccTACCAGGTGCAGGGCTATGCCGAACGCATCGAATCAGGTTGGTGGGATGGCGGCGATGTGCGTCGTGACTACTACCGCATCGAAACCCGTGACGGCCTGCGCGGCTGGGCCTACCGCGACCTGAGCCAGGCCGGTCCGCTTTGGCTg                                                                                                 >  1:150989/1‑149 (MQ=255)                                                aGGTGCAGGGCTATGCCGAACGCATCGAATCAGGTTGGTGGGATGGCGGCGATGTGAGTCGCGACTACTACCGCATCGAAACCCGTGACGGCCTGCGCGGCTGGGCCTACCGCGACCTGAGCCAGGCCGGTCCGCTTTGGCTGCAGggt                                                                                           >  6:18675/1‑149 (MQ=255)                                                     cAGGGCTATGCCGAACGCATCGAATCAGGTTGGTGGGATGGCGGCGTTGTGCGTCGCGACTACTACCGCATCGAAACGCGTGACGGCGTGCGCGGCTGGGCCTACCGCGACCTGAGCCAGGCCGGTCCGCTTTGGCTGCAGggttggtt                                                                                      <  7:206528/149‑1 (MQ=255)                                                     cAGGGCTATGCCGAACGCATCGAATCAGGTTGGTGGGATGGCGGCGATGTGCGTCGCGACTACTACCGCATCGAAACCCGTGACGGCCTGCGCGGCTGGGCCTACCGCGACCTGAGCCAGGCCGGTCCGCTTTGGCTGCAGggttggtt                                                                                      <  3:102570/149‑1 (MQ=255)                                                         gCTATGCCGAACGCATCGAATCAGGTTGGTGGGATGGCGGCGATGTGCGTCGCGACTACTACCGCATCGAAACCCGTGACGGCCTGCGCGGCTGGGCCTACCGCGACCTGAGCCAGGCCGGTCCGCTTTGGCTGCAGGGTTGGTTCGCa                                                                                  <  5:32732/149‑1 (MQ=255)                                                          cTATGCCGAACGCATCGAATCAGGTTGGTGGGATGGCGGCGATGTGCGTCGCGACTACTACCGCATCGAAACCCGTGACGGCCTGCGCGGCTGGGCCTACCGCGACCTGAGCCAGGCCGGTCCGCTTTGGCTGCAGGGTTGGTTCGCAt                                                                                 <  2:305860/149‑1 (MQ=255)                                                                cGAACGCATCGAATCAGGTTGGTGGGATGGCGGCGATGTGCGTCGCGACTACTACCGCATCGAAACCCGTGACGGCCTGCGCGGCTGGGCCTACCGCGACCTGAGCCAGGCCGGTCCGCTTTGGCTGCAGGGTTGGTTCGCATGAacac                                                                           <  4:250572/149‑1 (MQ=255)                                                                 gAACGCATCGAATCAGGTTGGTGGGATGGCGGCGATGTGCGTCGCGACTACTACCGCATCGAAACCCGTGACGGCCTGCGCGGCTGGGCCTACCGCGACCTGAGCCAGGCCGGTCCGCTTTGGCTGCAGGGTTGGTTCGCATGAACAcc                                                                          >  5:220701/1‑149 (MQ=255)                                                                     gCATCGAATGCGGTTGGTGGGATGGCGGCGATGTGCGTCGCGACTACTACCGCATCGAAACCCGTGACGGCCTGCGCGGCTGGGCCTACCGCGACCTGAGCCAGGCCGGTCCGCTTTGGCTGCAGGGTTGGTTCGCATGAACACCCCgg                                                                      <  2:203036/149‑1 (MQ=255)                                                                       aTCGAATCAGGTTGGTGGGATGGCGGCGATGTGCGTCGTGACTACTACCGCATCGAAACCCGTGACGGCCTGCGCGGCTGGGCCTACCGCGACCTGAGCCAGGCCGGTCCGCTTTGGCTGCAGGGTTGGTTCGCATGAACACCCCGGGt                                                                    <  2:150989/149‑1 (MQ=255)                                                                        tCGAATCAGGTTGGTGGGATGGCGGCGATGTGCGTCGCGACTACTACCGCATCGAAACCCGTGACGGCCTGCGCGGCTGGGCCTACCGCGACCTGAGCCAGGCCGGTCCGCTTTGGCTGCAGGGTTGGTTCGCATGAACACCCCGGGt                                                                    >  2:265041/1‑148 (MQ=255)                                                                            aTCAGGTTGGTGGGATGGCGGCGATGTGCGTCGCGACTACTACCGCATCGAAACCCGTGACGGCCTGCGCGGCTGGGCCTACCGCGACCTGAGCCAGGCCGGTCCGCTTTGGCTGCAGGGTTGGTTCGCATGAACACCCCGGGTTATg                                                                <  5:37053/148‑1 (MQ=255)                                                                            aTCAGGTTGGTGGGATGGCGGCGATGTGCGTCGCGACTACTACCGCATCGAAACCCGTGACGGCCTGCGCGGCTGGGCCTACCGCGACCTGAGCCAGGCCGGTCCGCTTTGGCTGCAGGGTTGGTTCGCATGAACACCCCGGGTTATg                                                                >  6:37053/1‑148 (MQ=255)                                                                            aTCAGGTTGGTGGGATGGCGGCGATGTGCGTCGCGACTACTACCGCATCGAAACCCGTGACGGCCTGCGCGGCTGGGCCTACCGCGACCTGAGCCAGGCCGGTCCGCTTTGGCTGCAGGGTTGGTTCGCATGAACACCCCGGGTTATGc                                                               >  5:179340/1‑149 (MQ=255)                                                                                ggTTGGTGGGATGGCGGCGATGTGCGTCGCGACTACTACCGCATCGAAACCCGTGACGGCCTGCGCGGCTGGGCCTACCGCGACCTGAGCCAGGCCGGTCCGCTTTGGCTGCAGGGTTGGTTCGCATGAACACCCCGGGTTATGCCGAg                                                           <  5:142292/149‑1 (MQ=255)                                                                                 gTTGGTGGGATGGCGGCGATGTGCGTCGCGACTACTACCGCATCGAAACCCGTGACGGCCTGCGCGGCTGGGCCTACCGCGACCTGAGCCAGGCCGGTCCGCTTTGGCTGCAGggttgg                                                                                        >  3:43554/1‑119 (MQ=255)                                                                                 gTTGGTGGGATGGCGGCGATGTGCGTCGCGACTACTACCGCATCGAAACCCGTGACGGCCTGCGCGGCTGGGCCTACCGCGACCTGAGCCAGGCCGGTCCGCTTTGGCTGCAGggttgg                                                                                        <  4:43554/119‑1 (MQ=255)                                                                                 gTTGGTGGGATGGCGGCGATGTGCGTCGCGACTACTACCGCATAGAAACCCGTGACGGCCTGCGCGGCTGGGCCTACCGAGACCTGAGCCACGCCGGTCCGCTTTGGATGCAGGGTTGCTTCGCATGAACACCCCGGGTTATGCCGAGc                                                          >  4:35001/1‑149 (MQ=255)                                                                                               ggcgATGTGCGTCGCGACTACTACCGCATCGAAACCCGTGACGGCCTGCGCGGCTGGGCCTACCGCGACCTGAGCCAGGCCGGTCCGCTTTGGCTGCAGGGTTGGTTCGCATGAACACCCCGTGTTATGCCGAGCTGCATTGCCTTTcc                                            <  5:18675/149‑1 (MQ=255)                                                                                                        cGTCGCGACTACTACCGCATCGAAACCCGTGACGGCCTGCGCGGCTGGGCCTACCGCGACCTGAGCCAGGCCGGTCCGCTTTGGCTGCAGGGTTGGTTCGCATGAACACCCCGGGTTATGCCGAGCTGCATTGCCTTTCCAACTTCAGc                                   >  5:119614/1‑149 (MQ=255)                                                                                                         gTCGCGACTACTACCGCATCGAAACCCGTGACGGCCTGCGCGGCTGGGCCTACCGCGACCTGAGCCAGGCCGGTCCGCTTTGGCTGCAGGGTTGGTTCGCATGAACACCCCGGGTTATGCCGAGCTGCATTGCCTTTCCAACTTCAGCt                                  >  1:233912/1‑149 (MQ=255)                                                                                                                   ctacCGCATCGAAACCCGTGACGGCCTGCGCGGCTGGGCCTACCGCGACCTGAGCCAGGCCGGTCCGCTTTGGCTGCAGGGTTGGTTCGCATGAACACCCCGGGTTATGCCGAGCTGCATTGCCTTTCCAACTTCAGCTTCCAgcgc                          <  6:104840/147‑1 (MQ=255)                                                                                                                   ctacCGCATCGAAACCCGTGACGGCCTGCGCGGCTGGGCCTACCGCGACCTGAGCCAGGCCGGTCCGCTTTGGCTGCAGGGTTGGTTCGCATGAACACCCCGGGTTATGCCGAGCTGCATTGCCTTTCCAACTTCAGCTTCCAGcgcg                         <  2:171138/148‑1 (MQ=255)                                                                                                                    tacCGCATCGAAACCCGTGACGGCCTGCGCGGCTGGGCCTACCGCGACCTGAGCCAGGCCGGTCCGCTTTGGCTGCAGGGTTGGTTCGCATGAACACCCCGGGTTATGCCGAGCTGCATTGCCTTTCCAACTTCAGCTTCCAGCGCGGt                       >  2:126292/1‑149 (MQ=255)                                                                                                                      ccGCATCGAAACCCGTGACGGCCTGCGCGGCTGGGCCTACCGCGACCTGAGCCAGGCCGGTCCGCTTTGGCTGCAGGGTTGGTTCGCATGAACACCCCGGGTTATGCCGAGCTGCATTGCCTTTCCAACTTCAGCTTCCAGCGCGGTGc                     >  7:156861/1‑149 (MQ=255)                                                                                                                      ccGCATCGAAACCCGTGACGGCCTGCGCGGCTGGGCCTACCGCGACCTGAGCCAGGCCGGTCCGCTTTGGCTGCAGGGTTGGTTCGCATGAACACCCCGGGTTATGCCGAGCTGCATTGCCTTTCAAACTTCAGCTTCCAGCGCGGTGc                     >  1:70645/1‑149 (MQ=255)                                                                                                                       cGCATCGAAACCCGTGACGGCCTGCGCGGCTGGGCCTACCGCGACCTGAGCCAGGCCGGTCCGCTTTGGCTGCAGGGTTGGTTCGCATGAACACCCCGGGTTATGCCGAGCTGCATTGCCTTTCCAACTTCAGCTTCCAGCGCGGTGCg                    >  1:132263/1‑149 (MQ=255)                                                                                                                                    gTGACGGCCTGCGCGGCTGGGCCTACCGCGACCTGAGCcaggccgtcacgggtttcgatgcggtagtagtcgcgacgcacatcgccgccatcccaccaacctgattcgatgcgttcggcatagccctgcacctggtaggcggcgtcatc       <  6:117479‑M2/149‑112 (MQ=255)                                                                                                                                    gTGACGGCCTGCGCGGCTGGGCCTACCGCGACCTGAGCcaggccgtcacgggtttcgatgcggtagtagtcgcgacgcacatcgccgccatcccaccaacctgattcgatgcgttcggcatagccctgcacctggtaggcggcgtcatc       <  2:325133‑M2/149‑112 (MQ=255)                                                                                                                                     tGACGGCCTGCGCGGCTGGGCCTACCGCGACCTGAGCcaggccgtcacgggtttcgatgcggtagtagtcgcgacgcacatcgccgccatcccaccaacctgattcgatgcgttcggcatagccctgcacctggtaggcggcgtcatc       <  4:231572‑M2/148‑112 (MQ=255)                                                                                                                                         ggCCTGCGCGGCTGGGCCTACCGCGACCTGAGCcaggccgtcacgggtttcgatgcggtagtagtcgcgacgcacatcgccgccatcccaccaacctgattcgatgcgttcggcatagccctgcacctggtaggcggcgtcatccagcg  <  5:207078‑M2/149‑117 (MQ=255)                                                                                                                                              |                                                                                                                                                GGGGTGGCTGTTGTCGGCACCGATCGCGCTGGATGACGCCGCCTACCAGGTGCAGGGCTATGCCGAACGCATCGAATCAGGTTGGTGGGATGGCGGCGATGTGCGTCGCGACTACTACCGCATCGAAACCCGTGACGGCCTGCGCGGCTGGGCCTACCGCGACCTGAGCCAGGCCGGTCCGCTTTGGCTGCAGGGTTGGTTCGCATGAACACCCCGGGTTATGCCGAGCTGCATTGCCTTTCCAACTTCAGCTTCCAGCGCGGTGCGTCGAGCGCCGACGAGCTG  >  NC_002947/3528001‑3528285

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.