New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3528142	40 (0.770)	5 (0.100)	4/252	NT	11.6%	coding (1353/1419 nt)	imuB	DNA repair DNA linked protein
	?	NC_002947	= 3528169	38 (0.770)					coding (1380/1419 nt)	imuB	DNA repair DNA linked protein

ACGCCGCCTACCAGGTGCAGGGCTATGCCGAACGCATCGAATCAGGTTGGTGGGATGGCGGCGATGTGCGTCGCGACTACTACCGCATCGAAACCCGTGACGGCCTGCGCGGCTGGGCCTACCGCGACCTGAGCCAGGCCGGTCCGCTTTGGCTGCAGGGTTGGTTCGCATGAACACCCCGGGTTATGCCGAGCTGCATTGCCTTTCCAACTTCAGCTTCCAGCGCGGTGCGTCGAGCGCCGACGAGCTGTTCCGGCGTGCGCGCGAGCAGGGCTAC  >  NC_002947/3528036‑3528312                                                                                                                                      |                                                                                                                                                aCGCCGCCTACCAGGTGCAGGGCTATGCCGAACGCATCGAATCAGGTTGGTGGGATGGCGGCGATGTGCGTCGCGACTACTACCGCATCGAAACCCGTGACGGCCTGCGCGGCTGGGCCTACCGCGACCTGAGCCAGGCCGGTCCGCtt                                                                                                                                  <  1:9289/149‑1 (MQ=255)   gccgccTACCAGGTGCAGGGCTATGCCGAACGCATCGAATCAGGTTGGTGGGATGGCGGCGATGTGCGTCGCGACTACTACCGCATCGAAACCCGTGACGGCCTGCGCGGCTGGGCCTACCGCGACCTGAGCCAGGCCGGTCCGCTTTg                                                                                                                                >  6:32732/1‑149 (MQ=255)       ccTACCAGGTGCAGGGCTATGCCGAACGCATCGAATCAGGTTGGTGGGATGGCGGCGATGTGCGTCGTGACTACTACCGCATCGAAACCCGTGACGGCCTGCGCGGCTGGGCCTACCGCGACCTGAGCCAGGCCGGTCCGCTTTGGCTg                                                                                                                            >  1:150989/1‑149 (MQ=255)             aGGTGCAGGGCTATGCCGAACGCATCGAATCAGGTTGGTGGGATGGCGGCGATGTGAGTCGCGACTACTACCGCATCGAAACCCGTGACGGCCTGCGCGGCTGGGCCTACCGCGACCTGAGCCAGGCCGGTCCGCTTTGGCTGCAGggt                                                                                                                      >  6:18675/1‑149 (MQ=255)                  cAGGGCTATGCCGAACGCATCGAATCAGGTTGGTGGGATGGCGGCGTTGTGCGTCGCGACTACTACCGCATCGAAACGCGTGACGGCGTGCGCGGCTGGGCCTACCGCGACCTGAGCCAGGCCGGTCCGCTTTGGCTGCAGggttggtt                                                                                                                 <  7:206528/149‑1 (MQ=255)                  cAGGGCTATGCCGAACGCATCGAATCAGGTTGGTGGGATGGCGGCGATGTGCGTCGCGACTACTACCGCATCGAAACCCGTGACGGCCTGCGCGGCTGGGCCTACCGCGACCTGAGCCAGGCCGGTCCGCTTTGGCTGCAGggttggtt                                                                                                                 <  3:102570/149‑1 (MQ=255)                      gCTATGCCGAACGCATCGAATCAGGTTGGTGGGATGGCGGCGATGTGCGTCGCGACTACTACCGCATCGAAACCCGTGACGGCCTGCGCGGCTGGGCCTACCGCGACCTGAGCCAGGCCGGTCCGCTTTGGCTGCAGGGTTGGTTCGCa                                                                                                             <  5:32732/149‑1 (MQ=255)                       cTATGCCGAACGCATCGAATCAGGTTGGTGGGATGGCGGCGATGTGCGTCGCGACTACTACCGCATCGAAACCCGTGACGGCCTGCGCGGCTGGGCCTACCGCGACCTGAGCCAGGCCGGTCCGCTTTGGCTGCAGGGTTGGTTCGCAt                                                                                                            <  2:305860/149‑1 (MQ=255)                             cGAACGCATCGAATCAGGTTGGTGGGATGGCGGCGATGTGCGTCGCGACTACTACCGCATCGAAACCCGTGACGGCCTGCGCGGCTGGGCCTACCGCGACCTGAGCCAGGCCGGTCCGCTTTGGCTGCAGGGTTGGTTCGCATGAacac                                                                                                      <  4:250572/149‑1 (MQ=255)                              gAACGCATCGAATCAGGTTGGTGGGATGGCGGCGATGTGCGTCGCGACTACTACCGCATCGAAACCCGTGACGGCCTGCGCGGCTGGGCCTACCGCGACCTGAGCCAGGCCGGTCCGCTTTGGCTGCAGGGTTGGTTCGCATGAACAcc                                                                                                     >  5:220701/1‑149 (MQ=255)                                  gCATCGAATGCGGTTGGTGGGATGGCGGCGATGTGCGTCGCGACTACTACCGCATCGAAACCCGTGACGGCCTGCGCGGCTGGGCCTACCGCGACCTGAGCCAGGCCGGTCCGCTTTGGCTGCAGGGTTGGTTCGCATGAACACCCCgg                                                                                                 <  2:203036/149‑1 (MQ=255)                                    aTCGAATCAGGTTGGTGGGATGGCGGCGATGTGCGTCGTGACTACTACCGCATCGAAACCCGTGACGGCCTGCGCGGCTGGGCCTACCGCGACCTGAGCCAGGCCGGTCCGCTTTGGCTGCAGGGTTGGTTCGCATGAACACCCCGGGt                                                                                               <  2:150989/149‑1 (MQ=255)                                     tCGAATCAGGTTGGTGGGATGGCGGCGATGTGCGTCGCGACTACTACCGCATCGAAACCCGTGACGGCCTGCGCGGCTGGGCCTACCGCGACCTGAGCCAGGCCGGTCCGCTTTGGCTGCAGGGTTGGTTCGCATGAACACCCCGGGt                                                                                               >  2:265041/1‑148 (MQ=255)                                         aTCAGGTTGGTGGGATGGCGGCGATGTGCGTCGCGACTACTACCGCATCGAAACCCGTGACGGCCTGCGCGGCTGGGCCTACCGCGACCTGAGCCAGGCCGGTCCGCTTTGGCTGCAGGGTTGGTTCGCATGAACACCCCGGGTTATg                                                                                           <  5:37053/148‑1 (MQ=255)                                         aTCAGGTTGGTGGGATGGCGGCGATGTGCGTCGCGACTACTACCGCATCGAAACCCGTGACGGCCTGCGCGGCTGGGCCTACCGCGACCTGAGCCAGGCCGGTCCGCTTTGGCTGCAGGGTTGGTTCGCATGAACACCCCGGGTTATg                                                                                           >  6:37053/1‑148 (MQ=255)                                         aTCAGGTTGGTGGGATGGCGGCGATGTGCGTCGCGACTACTACCGCATCGAAACCCGTGACGGCCTGCGCGGCTGGGCCTACCGCGACCTGAGCCAGGCCGGTCCGCTTTGGCTGCAGGGTTGGTTCGCATGAACACCCCGGGTTATGc                                                                                          >  5:179340/1‑149 (MQ=255)                                             ggTTGGTGGGATGGCGGCGATGTGCGTCGCGACTACTACCGCATCGAAACCCGTGACGGCCTGCGCGGCTGGGCCTACCGCGACCTGAGCCAGGCCGGTCCGCTTTGGCTGCAGGGTTGGTTCGCATGAACACCCCGGGTTATGCCGAg                                                                                      <  5:142292/149‑1 (MQ=255)                                              gTTGGTGGGATGGCGGCGATGTGCGTCGCGACTACTACCGCATCGAAACCCGTGACGGCCTGCGCGGCTGGGCCTACCGCGACCTGAGCCAGGCCGGTCCGCTTTGGCTGCAGggttgg                                                                                                                   >  3:43554/1‑119 (MQ=255)                                              gTTGGTGGGATGGCGGCGATGTGCGTCGCGACTACTACCGCATCGAAACCCGTGACGGCCTGCGCGGCTGGGCCTACCGCGACCTGAGCCAGGCCGGTCCGCTTTGGCTGCAGggttgg                                                                                                                   <  4:43554/119‑1 (MQ=255)                                              gTTGGTGGGATGGCGGCGATGTGCGTCGCGACTACTACCGCATAGAAACCCGTGACGGCCTGCGCGGCTGGGCCTACCGAGACCTGAGCCACGCCGGTCCGCTTTGGATGCAGGGTTGCTTCGCATGAACACCCCGGGTTATGCCGAGc                                                                                     >  4:35001/1‑149 (MQ=255)                                                            ggcgATGTGCGTCGCGACTACTACCGCATCGAAACCCGTGACGGCCTGCGCGGCTGGGCCTACCGCGACCTGAGCCAGGCCGGTCCGCTTTGGCTGCAGGGTTGGTTCGCATGAACACCCCGTGTTATGCCGAGCTGCATTGCCTTTcc                                                                       <  5:18675/149‑1 (MQ=255)                                                                     cGTCGCGACTACTACCGCATCGAAACCCGTGACGGCCTGCGCGGCTGGGCCTACCGCGACCTGAGCCAGGCCGGTCCGCTTTGGCTGCAGGGTTGGTTCGCATGAACACCCCGGGTTATGCCGAGCTGCATTGCCTTTCCAACTTCAGc                                                              >  5:119614/1‑149 (MQ=255)                                                                      gTCGCGACTACTACCGCATCGAAACCCGTGACGGCCTGCGCGGCTGGGCCTACCGCGACCTGAGCCAGGCCGGTCCGCTTTGGCTGCAGGGTTGGTTCGCATGAACACCCCGGGTTATGCCGAGCTGCATTGCCTTTCCAACTTCAGCt                                                             >  1:233912/1‑149 (MQ=255)                                                                                ctacCGCATCGAAACCCGTGACGGCCTGCGCGGCTGGGCCTACCGCGACCTGAGCCAGGCCGGTCCGCTTTGGCTGCAGGGTTGGTTCGCATGAACACCCCGGGTTATGCCGAGCTGCATTGCCTTTCCAACTTCAGCTTCCAgcgc                                                     <  6:104840/147‑1 (MQ=255)                                                                                ctacCGCATCGAAACCCGTGACGGCCTGCGCGGCTGGGCCTACCGCGACCTGAGCCAGGCCGGTCCGCTTTGGCTGCAGGGTTGGTTCGCATGAACACCCCGGGTTATGCCGAGCTGCATTGCCTTTCCAACTTCAGCTTCCAGcgcg                                                    <  2:171138/148‑1 (MQ=255)                                                                                 tacCGCATCGAAACCCGTGACGGCCTGCGCGGCTGGGCCTACCGCGACCTGAGCCAGGCCGGTCCGCTTTGGCTGCAGGGTTGGTTCGCATGAACACCCCGGGTTATGCCGAGCTGCATTGCCTTTCCAACTTCAGCTTCCAGCGCGGt                                                  >  2:126292/1‑149 (MQ=255)                                                                                   ccGCATCGAAACCCGTGACGGCCTGCGCGGCTGGGCCTACCGCGACCTGAGCCAGGCCGGTCCGCTTTGGCTGCAGGGTTGGTTCGCATGAACACCCCGGGTTATGCCGAGCTGCATTGCCTTTCCAACTTCAGCTTCCAGCGCGGTGc                                                >  7:156861/1‑149 (MQ=255)                                                                                   ccGCATCGAAACCCGTGACGGCCTGCGCGGCTGGGCCTACCGCGACCTGAGCCAGGCCGGTCCGCTTTGGCTGCAGGGTTGGTTCGCATGAACACCCCGGGTTATGCCGAGCTGCATTGCCTTTCAAACTTCAGCTTCCAGCGCGGTGc                                                >  1:70645/1‑149 (MQ=255)                                                                                    cGCATCGAAACCCGTGACGGCCTGCGCGGCTGGGCCTACCGCGACCTGAGCCAGGCCGGTCCGCTTTGGCTGCAGGGTTGGTTCGCATGAACACCCCGGGTTATGCCGAGCTGCATTGCCTTTCCAACTTCAGCTTCCAGCGCGGTGCg                                               >  1:132263/1‑149 (MQ=255)                                                                                                 gTGACGGCCTGCGCGGCTGGGCCTACCGCGACCTGAGCcaggccgtcacgggtttcgatgcggtagtagtcgcgacgcacatcgccgccatcccaccaacctgattcgatgcgttcggcatagccctgcacctggtaggcggcgtcatc                                  <  2:325133‑M2/149‑112 (MQ=255)                                                                                                 gTGACGGCCTGCGCGGCTGGGCCTACCGCGACCTGAGCcaggccgtcacgggtttcgatgcggtagtagtcgcgacgcacatcgccgccatcccaccaacctgattcgatgcgttcggcatagccctgcacctggtaggcggcgtcatc                                  <  6:117479‑M2/149‑112 (MQ=255)                                                                                                  tGACGGCCTGCGCGGCTGGGCCTACCGCGACCTGAGCcaggccgtcacgggtttcgatgcggtagtagtcgcgacgcacatcgccgccatcccaccaacctgattcgatgcgttcggcatagccctgcacctggtaggcggcgtcatc                                  <  4:231572‑M2/148‑112 (MQ=255)                                                                                                      ggCCTGCGCGGCTGGGCCTACCGCGACCTGAGCcaggccgtcacgggtttcgatgcggtagtagtcgcgacgcacatcgccgccatcccaccaacctgattcgatgcgttcggcatagccctgcacctggtaggcggcgtcatccagcg                             <  5:207078‑M2/149‑117 (MQ=255)                                                                                                               ggCTGGGCCTACCGCGACCTGAGCCAGGCCGGTCCGCTTTGGCTGCAGGGTTGGTTCGCATGAACACCCCGGGTTATGCCGAGCTGCATTGCCTTTCCAACTTCAGCTTCCAGCGCGGTGCGTCGAGCGCCGACGAGCTGTTCCGGCGt                    <  2:206915/149‑1 (MQ=255)                                                                                                                gCTGGGCCTACCGCGACCTGAGCcaggccgtcacgggtttcgatgcggtagtagtcgcgacgcacatcgccgccatcccaccaacctgattcgatgcgttcggcatagccctgcacctggtaggcggcgtcatccagcgcgatcggtgc                   >  1:325133‑M2/1‑23 (MQ=255)                                                                                                                gCTGGGCCTACCGCGACCTGAGCCAGGCCGGTCCGCTTTGGCTGCAGGGTTGGTTCGCATGAACACCCCGGGTTATGCCGAGCTGCATTGCCTTTCCAACTTCAGCTTCCAGCGCGGTGCGTCGAGCGCCGACGAGCTGTTCCGGCGTg                   <  6:119614/149‑1 (MQ=255)                                                                                                                   gggCCTACCGCGACCTGAGCCAGGCCGGTCCGCTTTGGCTGCAGGGTTGGTTCGCATGAACACCCCGGGTTATGGCGAGCTGCATTGCCTTTCCAACTTCAGCTTCCAGCGCGGTGCGTCGAGCGCCGACGAGCTGTTCCGGCGTgcgc                >  8:91114/1‑149 (MQ=255)                                                                                                                    ggCCTACCGCGACCTGAGCCAGGCCGGTCCGCTTTGCCTGCAGCGTGGGTTCGCATGAACACCCCGGGTTATGCCGAGCTGCATTGCCTTTCCAACTTCAGGATCCAGCGCGGTCCGTCGAGCGCCGACGAGCTGTTACGGCGTccgcg               >  8:239676/1‑149 (MQ=255)                                                                                                                      ccTACCGCGACCTGAGCCAGGCCGGTCCGCTTTGGCTGCAGGGTTGGTTCGCATGAACACCCCGGGTTATGCCGAGCTGCATTGCCTTTCCAACTTCAGCTTCCAGCGCGGTGCGTCGAGCGCCGACGAGCTGTTCCGGCGTgcgcgc              >  6:34148/1‑148 (MQ=255)                                                                                                                      ccTACCGCGACCTGAGCCAGGCCGGTCCGCTTTGGCTGCAGGGTTGGTTCGCATGAACACCCCGGGTTATGCCGAGCTGCATTGCCTTTCCAACTTCAGCTTCCAGCGCGGTGCGTCGAGCGCCGACGAGCTGTTCCGGCGTGcgcgcg             >  7:251774/1‑149 (MQ=255)                                                                                                                           cgcgACCTGAGCCAGGCCGGTCCGCTTTGGCTGCAGGGTTGGTTCGCATGAACACCCCGGGTTATGCCGAGCTGCATTGCCTTTCCAACTTCAGCTTCCAGCGCGGTGCGTCGAGCGCCGACGAGCTGTTCCGGCGTGCGCGCGAGCAg        >  2:281642/1‑149 (MQ=255)                                                                                                                            gcgACCTGAGCCAGGCCGGTCCGCTTTGGCTGCAGGGTTGGTTCGCATGAACACCCCGGGTTATGCCGAGCTGCATTGCCTTTCCAACTTCAGCTTCCAGCGCGGTGCGTCGAGCGCCGACGAGCTGTTCCGGCGTGCGCGCGAGCAgg       <  6:220701/149‑1 (MQ=255)                                                                                                                                 cTGAGCCAGGCCGGTCCGCGTTGGCTGCAGGGTTGGTTCGCATGAACACCCCGGGTTATGCCGAGCTGCATTGCCTTTCCAACTTCAGCTTCCAGCGCGGTGCGTCGAGCGCCGACGAGCTGTTCCGGCGTGCGCGCGAGCAGGGCTAc  <  6:179340/149‑1 (MQ=255)                                                                                                                                      |                                                                                                                                                ACGCCGCCTACCAGGTGCAGGGCTATGCCGAACGCATCGAATCAGGTTGGTGGGATGGCGGCGATGTGCGTCGCGACTACTACCGCATCGAAACCCGTGACGGCCTGCGCGGCTGGGCCTACCGCGACCTGAGCCAGGCCGGTCCGCTTTGGCTGCAGGGTTGGTTCGCATGAACACCCCGGGTTATGCCGAGCTGCATTGCCTTTCCAACTTCAGCTTCCAGCGCGGTGCGTCGAGCGCCGACGAGCTGTTCCGGCGTGCGCGCGAGCAGGGCTAC  >  NC_002947/3528036‑3528312

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.