New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3628983 =	46 (0.880)	3 (0.060)	3/246	NT	7.9%	coding (773/1125 nt)	PP_3199	monooxygenase
	?	NC_002947	3629038 =	27 (0.560)					coding (828/1125 nt)	PP_3199	monooxygenase

TGGTTCCGCTGGCCGATGACCTGATGTACCTCTTCACCACCTCCCACGAGCCGGGCAACCCCTGGATGGAACCGGCCGCTTTGGCTGATGGCCTCCGCCAGCGGCTTGCCGGCTTCGGCGGGCTGATCGGCGAATTGCGCGAGCAGATCGTCGACAACGCCGGGGTCGTTTACAAGCCGCTTGAAGCGGTGTTTGTCGACGAACCCTGGTACTGCGGTCGAGTGCTGCTGATCGGGGATGCCGCCCATGCCACCACGCCACACCTGGGGCAGGGGGCAGGCATGGCCATTGAGGA  >  NC_002947/3628836‑3629130                                                                                                                                                    |                                                                                                                                                    aattgcgcgtcgaggctgccacccgcggtgagctcctcggcgagcaccacggcgtcctcaatggccatgcctgccccctgccccaggtgtggcgtggtggcatgggcggcatccccgatcagcagcactcgaccgcagtaccagggttc                                                                                                                                                    >  7:70841‑M1/148‑149 (MQ=255)  ggTTCCGCTGGCCGATGACCTGATGTACCTCTTCACCACCTCCCACGAGCCGGGCAACCCCTGGATGGAACCGGCCGCTTTGGCTGATGGCCTCCGCCAGCGGCTTGCCGGCTTCGGCGGGCTGATCGGCGAATTGCGCGAGCAGAtcg                                                                                                                                                   >  7:201253/1‑149 (MQ=255)    ttCCGCTGGCCGATGACCTGATGTACCTCTTCACCACCTCCCACGAGCCGGGCAACCCCTGGATGGAACCGGCCGCTTTGGCTGATGGCCTCCGCCAGCGGCTTGCCGGCTTCGGCGGGCTGATCGGCGAATTGCGCGAGCAGAtcgtc                                                                                                                                                 <  3:142897/149‑1 (MQ=255)         gtcgaggctgccacccgcggtgagctcctcggcgagcaccacggcgtcctcaatggccatgcctgccccctgccccaggtgtggcgtggtggcatgggcggcatccccgatcagcagcactcgaccgcagtaccagggtTCGTCGACaa                                                                                                                                            <  1:161976‑M1/10‑1 (MQ=255)               gATGACCTGATGTACCTCTTCACCACCTCCCACGAGCCGGGCAACCCCTGGATGGAACCGGCCGCTTTGGCTGATGGCCTCCGCCAGCGGCTTGCCGGCTTCGGCGGGCTGATCGGCGAATTGCGCGAGCAGATCGTCGACAACGCCgg                                                                                                                                      >  2:221231/1‑149 (MQ=255)                aTGACCTGATGGACCTCTTCACCACCTCCCACGAGCCGGGCAACCCCTGGATGGAACCGGCCGCTTTGGCTGATGGCCTCCGCCAGCGGCTTGCCGGCTTCGGCGGGCTGATCGGCGAATTGCGCGAGCAGATCGTCGACAACGCCggg                                                                                                                                     <  5:92424/149‑1 (MQ=255)                     cTGATGTACCTCTTCACCACCTCCCACGAGCCGGGCAACCCCTGGATGGAACCGGCCGCTTTGGCTGATGGCCTCCGCCAGCGGCTTGCCGGCTTCGGCGGGCTGATCGGCGAATTGCGCGAGCAGATCGTCGACAACGCCGGGGTCGt                                                                                                                                >  6:209144/1‑149 (MQ=255)                          gTACCTCTTCACCACCTCCCACGAGCCGGGCAACCCCTGGATGGAACCGGCCGCTTTGGCTGATGGCCTCCGCCAGCGGCTTGCCGGCTTCGGCGGGCTGATCGGCGAATTGCGCGAGCAGATCGTCGACAACGCCGGGGTCGttt                                                                                                                              <  1:95026/146‑1 (MQ=255)                          gTACCTCTTCACCACCTCCCACGAGCCGGGCAACCCCTGGATGGAACCGGCCGCTTTGGCTGATGGCCTCCGCCAGCGGCTTGCCGGCTTCGGCGGGCTGATCGGCGAATTGCGCGAGCAGATCGTCGACAACGCCGGGGTCGttt                                                                                                                              >  2:95026/1‑146 (MQ=255)                           tACCTCTTCACCACCTCCCACGAGCCGGGCAACCCCTGGATGGAACCGGCCGCTTTGGCTGATGGCCTCCGCCAGCGGCTTGCCGGCTTCGGCGGGCTGATCGGCGAATTGCGCGAGCAGATCGTCGACAACGCCGGGGTCGTTTACaa                                                                                                                          >  6:12953/1‑149 (MQ=255)                            aCCTCTTCACCACCTCCCACGAGCCGGGCAACCCCTGGATGGAACCGGCCGCTTTGGCTGATGGCCTCCGCCAGCGGCTTGCCGGCTTCGGCGGGCTGATCGGCGAATTGCGCGAGCAGATCGTCGACAACGCCGGGGTCGTTTACAAg                                                                                                                         >  5:53397/1‑149 (MQ=255)                             ccTCTTCACCACCTCCCACGAGCCGGGCAACCCCTGGATGGAACCGGCCGCTTTGGCTGATGGCCTCCGCCAGCGGCTTGCCGGCTTCGGCGGGCTGATCGGCGAATTGCGCGAGCAGATCGTCGACAACGCCGGGGTCGTTTACAAg                                                                                                                         <  8:61882/148‑1 (MQ=255)                             ccTCTTCACCACCTCCCACGAGCCGGGCAACCCCTGGATGGAACCGGCCGCTTTGGCTGATGGCCTCCGCCAGCGGCTTGCCGGCTTCGGCGGGCTGATCGGCGAATTGCGCGAGCAGATCGTCGACAACGCCGGGGTCGTTTACAAGc                                                                                                                        >  5:44154/1‑149 (MQ=255)                               tctTCACCACCTCCCACGAGCCGGGCAACCCCTGGATGGAACCGGCCGCTTTGGCTGATGGCCTCCGCCAGCGGCTTGCCGGCTTCGGCGGGCTGATCGGCGAATTGCGCGAGCAGATCGTCGACAACGCCGGGGTCGTTTACAAGCCg                                                                                                                      >  4:10326/1‑149 (MQ=255)                                 ttCACCACCTCCCACGAGCCGGGCAACCCCTGGATGGAACCGGCCGCTTTGGCTGATGGCCTCCGCCAGCGGCTTGCCGGCTTCGGCGGGCTGATCGGCGAATTGCGCGAGCAGATCGTCGACAACGCCGGGGTCGTTTACAAGCCGCt                                                                                                                    >  3:94066/1‑149 (MQ=255)                                    accaccTCCCACGAGTCGGGCAACCCCTGGATGGAACCGGCCGCTTTGGCTGATGGCCTCCGCCAGCGGCTTGCCGGCTTCGGCGGGCTGATCGGCGAATTGCGCGAGCAGATCGTCGACAACGCCGGGGTCGTTTACAAGCCGCTTg                                                                                                                  <  4:287225/148‑1 (MQ=255)                                            ccACGAGCCGGGCAACCCCTGGATGGAACCGGCCGCTTTGGCTGATGGCCTCCGCCAGCGGCTTGCCGGCTTCGGCGGGCTGATCGGCGAATTGCGCGAGCAGATCGTCGACAACGCCGGGGTCGTTTACAAGCCGCTTGAAGCGgtgt                                                                                                         >  6:277984/1‑149 (MQ=255)                                             cACGAGCCGGGCAACCCCTGGATGGAACCGGCCGCTTTGGCTGATGGCCTCCGCCAGCGGCTTGCCGGCTTCGGCGGGCTGATCGGCGAATTGCGCGAGCAGATCGTCGACAACGCCGGGGTCGTTTACAAGCCGCTTGAAGCGGTGtt                                                                                                        >  1:69771/1‑149 (MQ=255)                                              aCGAGCCGGGCAACCCCTGGATGGAACCGGCCGCTTTGGCTGATGGCCTCCGCCAGCGGCTTGCCGGCTTCGGCGGGCTGATCGGCGAATTGCGCGAGCAGATCGTCGACAACGCCGGGGTCGTTTACAAGCCGCTTGAAGCGGTGttt                                                                                                       <  2:69771/149‑1 (MQ=255)                                              aCGAGCCGGGCAACCCCTGGATGGAACCGGCCGCTTTGGCTGATGGCCTCCGCCAGCGGCTTGCCGGCTTCGGCGGGCTGATCGGCGAATTGCGCGAGCAGATCGTCGACAACGCCGGGGTCGTTTACAAGCCGCTTGAAGCGGTGttt                                                                                                       <  3:52130/149‑1 (MQ=255)                                                gAGCCGGGCAACCCCTGGATGGAACCGGCCGCTTTGGCTGATGGCCTCCGCCAGCGGCTTGCCGGCTTCGGCGGGCTGATCGGCGAATTGCGCGAGCAGATCGTCGACAACGCCGGGGTCGTTTACAAGCCGCTTGAAGCGGTGTTTGt                                                                                                     <  5:258567/149‑1 (MQ=255)                                                 aGCCGGGCAACCCCTGGATGGAACCGGCCGCTTTGGCTGATGGCCTCCGCCAGCGGCTTGCCGGCTTCGGCGGGCTGATCGGCGAATTGCGCGAGCAGATCGTCGACAACGCCGGGGTCGTTTACAAGCCGCTTGAAGCGGTGTTTGTc                                                                                                    <  5:126039/149‑1 (MQ=255)                                                   ggcgtcctcaatggccatgcctgccccctgccccaggtgtggcgtggtggcatgggcggcatccccgatcagcagcactcgaccgcagtaccagggtTCGTCGACAACGCCGGGGTCGTTTACAAGCCGCTTGAAGCGGTGTTTGTcga                                                                                                  >  2:161976‑M1/98‑149 (MQ=255)                                                   ccGGGCAACCCCTGGATGGAACCGGCCGCTTTGGCTGATGGCCTCCGCCAGCGGCTTGCCGGCTTCGGCGGGCTGATCGGCGAATTGCGCGAGCAGATCGTCGACAACGCCGGGGTCGTTTACAAGCCGCTTGAAGCGGTGTTTGTcga                                                                                                  <  5:12953/149‑1 (MQ=255)                                                      ggCAACCCCTGGATGGAACCGGCCGCTTTGGCTGATGGCCTCCGCCAGCGGCTTGCCGGCTTCGGCGGGCTGATCGGCGAATTGCGCGAGCAGATCGTCGACAACGCCGGGGTCGTTTACAAGCCGCTTGAAGCGGTGTTTGTcgacg                                                                                                >  6:210875/1‑148 (MQ=255)                                                       tcctcaatggccatgcctgccccctgccccaggtgtggcgtggtggcatgggcggcatccccgatcagcagcactcgaccgcagtaccagggttcgtc                                                                                                                                                 >  8:271040‑M1/94‑98 (MQ=255)                                                       tcctcaatggccatgcctgccccctgccccaggtgtggcgtggtggcatgggcggcatccccgatcagcagcactcgaccgcagtaccagggttcgtc                                                                                                                                                 <  7:271040‑M1/5‑1 (MQ=255)                                                          aCCCCTGGATGGAACCGGCCGCTTTGGCTGATGGCCTCCGCCAGCGGCTTGCCGGCTTCGGCGGGCTGATCGGCGAATTGCGCGAGCAGATCGTCGACAACGCCGGGGTCg                                                                                                                                 <  4:94157/111‑1 (MQ=255)                                                          aCCCCTGGATGGAACCGGCCGCTTTGGCTGATGGCCTCCGCCAGCGGCTTGCCGGCTTCGGCGGGCTGATCGGCGAATTGCGCGAGCAGATCGTCGACAACGCCGGGGTCg                                                                                                                                 >  3:94157/1‑111 (MQ=255)                                                           ccccTGGATGGAACCGGCCGCTTTGGCTGATGGCCTCCGCCAGCGGCTTGCCGGCTTCGGCGGGCTGATCGGCGAATTGCGCGAGCAGATCGTCGACAACGCCGGGGTCGTTTACAAGCCGCTTGAAGCGGTGTTTGTCGACGAACCCt                                                                                          >  4:242187/1‑149 (MQ=255)                                                                        ccGGCCGCTTTGGCTGATGGCCTCCGCCAGCGGCTTGCCGGCTTCGGCGGGCTGATCGGCGAATTGCGCGAGCAGATCGTCGACAACGCCGGGGTCGTTTACAAGCCGCTTGAAGCGGTGTTTGTCGACGAACCCTGGTACTGCGGTc                                                                              >  7:121248/1‑148 (MQ=255)                                                                                tttGGCTGAGGGCCTCCGCCAGCGGCTTGCCGGCTTCGGCGGGCTGATCGGCGAATTGCGCGAGCAGATCGTCGACAACGCCGGGGTCGTTTACAAGCCGCTTGAAGCGGTGTTTGTCGACGAACCCTGGTACTGCGGTCGAGtgctgc                                                                     <  2:171268/149‑1 (MQ=255)                                                                                  tGGCTGATGGCCTCCGCCAGCGGCTTGCCGGCTTCGGCGGGCTGATCGGCGAATTGCGCGAGCAGATCGTCGACAACGCCGGGGTCGTTTACAAGCCGCTTGAAGCGGTGTTTGTCGACGAACCCTGGTACTGCGGTCGAGtgctgc                                                                     <  5:210875/147‑1 (MQ=255)                                                                                  cccaggtgtggcgtggtggcatgggcggcatccccgatcagcagcactcgaccgcagtaccagggtTCGTCGACAACGCCGGGGTCGTTTACAAGCCGCTTGAAGCGGTGTTTGTCGACGaa                                                                                              <  4:217743‑M1/56‑1 (MQ=255)                                                                                  cccaggtgtggcgtggtggcatgggcggcatccccgatcagcagcactcgaccgcagtaccagggtTCGTCGACAACGCCGGGGTCGTTTACAAGCCGCTTGAAGCGGTGTTTGTCGACGaa                                                                                              >  3:217743‑M1/67‑122 (MQ=255)                                                                                   ggCTGATGGCCTCCGCCAGCGGCTTGCCGGCTTCGGCGGGCTGATCGGCGAATTGCGCGAGCAGATCGTCGACAACGCCGGGGTCGTTTACAAGCCGCTTGAAGCGGTGTTTGTCGACGAACCCTGGTACTGCGGTCGAGTGctgctg                                                                   <  5:277984/148‑1 (MQ=255)                                                                                      tGATGGCCTCCGCCAGCGGCTTGCCGGCTTCGGCGGGCTGATCGGCGAATTGCGCGAGCAGATCGTCGACAACGCCGGGGTCGTTTACAAGCCGCTTGAAGCGGTGTTTGTCGACGAACCCTGGTACTGCGGTCGAGTGCTGCTGATCg                                                               >  8:109371/1‑149 (MQ=255)                                                                                         tGGCCTCCGCCAGCGGCTTGCCGGCTTCGGCGGGCTGATCGGCGAATTGCGCGAGCAGATCGTCGACAACGCCGGGGTCGTTTACAAGCCGCTTGAAGCGGTGTTTGTCGACGAACCCTGGTACTGCGGTCGAGTGCTGCTGATCggg                                                             >  4:156377/1‑148 (MQ=255)                                                                                          ggCCTCCGCCAGCGGCTTGCCGGCTTCGGCGGGCTGATCGGCGAATTGCGCGAGCAGATCGTCGACAACGCCGGGGTCGTTTACAAGCCGCTTGAAGCGGTGTTTGTCGACGAACCCTGGTACTGCGGTCGAGTGCTGCTGATCgggg                                                            <  8:201253/148‑1 (MQ=255)                                                                                             cTCCGCCAGCGGCTTGCCGGCTTCGGCGGGCTGATCGGCGAATTGCGCGAGCAGATCGTCGACAACGCCGGGGTCGTTTACAAGCCGCTTGAAGCGGTGTTTGTCGACGAACCCTGGTACTGCg                                                                                 <  7:12434/124‑1 (MQ=255)                                                                                             cTCCGCCAGCGGCTTGCCGGCTTCGGCGGGCTGATCGGCGAATTGCGCGAGCAGATCGTCGACAACGCCGGGGTCGTTTACAAGCCGCTTGAAGCGGTGTTTGTCGACGAACCCTGGTACTGCg                                                                                 >  8:12434/1‑124 (MQ=255)                                                                                              tCCGCCAGCGGCTTGCCGGCTTCGGCGGGCTGATCGGCGAATTGCGCGAGCAGATCGTCGACAACGCCGGGGTCGTTTACAAGCCGCTTGAAGCGGTGTTTGTCGACGAACCCTGGTACTGCGGTCGAGTGCTGCTGATCGGGGATgcc                                                       >  2:100219/1‑149 (MQ=255)                                                                                                   cAGCGGCTTGCCGGCTTCGGCGGGCTGATCGGCGAATTGCGCGAGCAGATCGTCGACAACGCCGGGGTCGTTTACAAGCCGCTTGAAGCGGTGTTTGTCGACGAACCCTGGTACTGCGGTCGAGTGCTGCTGATCGGGGATGCCGCCCa                                                  <  6:53397/149‑1 (MQ=255)                                                                                                                gCTTCGGCGGGCTGATCGGCGAATTGCGCGAGCAGATCGTCGACAACGCCGGGGTCGTTTACAAGCCGCTTGAAGCGGTGTTTGTCGACGAACCCTGGTACTGCGGTCGAGTGCTGCTGATCGGGGATGCCGCCCATGCCACCACGCca                                     <  6:44154/149‑1 (MQ=255)                                                                                                                        gggCTGATCGGCGAATTGCGCGAGCAGATCGTCGACAACGCCGGGGTCGTTTACAAGCCGCTTGAAGCGGTGTTTGTCGACGAACCCTGGTACTGCGGTCGAGTGCTGCTGATCGGGGATGCCGCCCATGCCACCACGCCACACCTggg                             <  8:121248/149‑1 (MQ=255)                                                                                                                           cTGATCGGCGAATTGCGCGAGCAGATCGTCGACAACGCCGGGGTCGTTTACAAGCCGCTTGAAGCGGTGTTTGTCGACGAACCCTGGTACTGCGGTCGAGTGCTGCTGATCGGGGATGCCGCCCATGCCACCACGCCACACCTgggg                            >  3:89939/1‑147 (MQ=255)                                                                                                                              aTCGGCGAATTGCGCGAGCAGATCGTCGACAACGCCGGGGTCGTTTACAAGCCGCTTGAAGCGGTGTTTGTCGACGAACCCTGGTACTGCGGTCGAGTGCTGCTGATCGGGGATGCCGCCCATGCCACCACGCCACACCTggggcaggg                       <  3:50543/149‑1 (MQ=255)                                                                                                                               tCGGCGAATTGCGCGAGCAGATCGTCGACAACGCCGGGGTCGTTTACAAGCCGCTTGAAGCGGTGTTTGTCGACGAACCCTGGTACTGCGGTCGAGTGCTGCTGATCGGGGATGCCGCCCATGCCACCACGCCACACCTggggcagggg                      >  5:80059/1‑149 (MQ=255)                                                                                                                                  gCGAATTGCGCGAGCAGATCGTCGACAACGCCGGGGTCGTTTACAAGCCGCTTGAAGCGGTGTTTGTCGACGAACCCTGGTACTGCGGTCGAGTGCTGCTGATCGGGGATGCCGCCCATGCCACCACGCCACACCTggggcaggggg                     >  7:65540/1‑147 (MQ=255)                                                                                                                                   cGAATTGCGCGAGCAGATCGTCGACAACGCCGGGGTCGTTTACAAGCCGCTTGAAGCGGTGTTTGTCGACGAACCCTGGTACTGCGGTCGAGTGCTGCTGATCGGGGATGCCGCCCATGCCACCACGCCACACCTggggcagggggcag                  <  6:80059/149‑1 (MQ=255)                                                                                                                                          cgcgAGCAGATCGTCGACAACGCCGGGGTCGTTTACAAGCCGCTTGAAGCGGTGTTTGTCGACGAACCCTGGTACTGCGGTCGAGTGCTGCTGATCGGGGATGCCGCCCATGCCACCACGCCACACCTgggg                            >  2:66087/1‑132 (MQ=255)                                                                                                                                          cgcgAGCAGATCGTCGACAACGCCGGGGTCGTTTACAAGCCGCTTGAAGCGGTGTTTGTCGACGAACCCTGGTACTGCGGTCGAGTGCTGCTGATCGGGGATGCCGCCCATGCCACCACGCCACACCTgggg                            <  1:66087/132‑1 (MQ=255)                                                                                                                                            cgAGCAGATCGTCGACAACGCCGGGGTCGTTTACAAGCCGCTTGAAGCGGTGTTTGTCGACGAACCCTGGTACTGCGGTCGAGTGCTGCTGATCGGGGATGCCGCCCATGCCACCACGCCACACCTGGGGCAGGGGGCAGGCATGGCCa         <  4:94066/149‑1 (MQ=255)                                                                                                                                              aGCAGATCGTCGACAACGCCGGGGTCGTTTACAAGCCGCTTGAAGCGGTGTTTGTCGACGAACCCTGGTACTGCGGTCGAGTGCTGCTGATCGGGGATGCCGCCCATGCCACCACGCCACACCTGGGGCAGGGGGCAGGCATGGCCAtt       <  7:109371/149‑1 (MQ=255)                                                                                                                                              aGCAGATCGTCGACAACGCCGGGGTCGTTTACAAGCCGCTTGAAGCGGTGTTTGTCGACGAACCCTGGTACTGCGGTCGAGTGCTGCTGATCGGGGATGCCGCCCATGCCACCACGCCACACCTGGGGCAGGGGGCAGGCATGGCCAtt       <  3:156377/149‑1 (MQ=255)                                                                                                                                                 aGATCGGCGACAACGCCGGGGGCGTTTACAAGCCGCTTGAAGCGGTGTTTGTCGACGAACCCTGGTACTGCGGTCGAGTGCTGCTGATCGGGGATGCCGCCCATGCCACCACGCCACACCTGGGGCAGGGGGCAGGCATGGCCATTGAg    <  5:209144/149‑1 (MQ=255)                                                                                                                                                    TCGTCGACAACGCCGGGGTCGTTTACAAGCCGCTTGAAGCGGTGTTTGTCGACGAACCCTGGTACTGCGGTCGAGTGCTGCTGATCGGGGATGCCGCCCATGCCACCACGCCACACCTGGGGCAGGGGGCAGGCATGGCCATTGAGGa  >  3:242187‑M1/1‑148 (MQ=255)                                                                                                                                                    |                                                                                                                                                    TGGTTCCGCTGGCCGATGACCTGATGTACCTCTTCACCACCTCCCACGAGCCGGGCAACCCCTGGATGGAACCGGCCGCTTTGGCTGATGGCCTCCGCCAGCGGCTTGCCGGCTTCGGCGGGCTGATCGGCGAATTGCGCGAGCAGATCGTCGACAACGCCGGGGTCGTTTACAAGCCGCTTGAAGCGGTGTTTGTCGACGAACCCTGGTACTGCGGTCGAGTGCTGCTGATCGGGGATGCCGCCCATGCCACCACGCCACACCTGGGGCAGGGGGCAGGCATGGCCATTGAGGA  >  NC_002947/3628836‑3629130

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.