New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3628983 =	46 (0.880)	3 (0.060)	3/246	NT	7.9%	coding (773/1125 nt)	PP_3199	monooxygenase
	?	NC_002947	3629038 =	27 (0.560)					coding (828/1125 nt)	PP_3199	monooxygenase

CCCCTGGATGGAACCGGCCGCTTTGGCTGATGGCCTCCGCCAGCGGCTTGCCGGCTTCGGCGGGCTGATCGGCGAATTGCGCGAGCAGATCGTCGACAACGCCGGGGTCGTTTACAAGCCGCTTGAAGCGGTGTTTGTCGACGAACCCTGGTACTGCGGTCGAGTGCTGCTGATCGGGGATGCCGCCCATGCCACCACGCCACACCTGGGGCAGGGGGCAGGCATGGCCATTGAGGACG‑CCGTGGTGCTCGCCGAGGAGCTCACCGCGGGTGGCAGCCTCGACGCGCAATT  >  NC_002947/3628894‑3629184                                                                                                                                                 |                                                                                                                                                    ccccTGGATGGAACCGGCCGCTTTGGCTGATGGCCTCCGCCAGCGGCTTGCCGGCTTCGGCGGGCTGATCGGCGAATTGCGCGAGCAGATCGTCGACAACGCCGGGGTCGTTTACAAGCCGCTTGAAGCGGTGTTTGTCGACGAACCCt                                                                                                                                                 >  4:242187/1‑149 (MQ=255)              ccGGCCGCTTTGGCTGATGGCCTCCGCCAGCGGCTTGCCGGCTTCGGCGGGCTGATCGGCGAATTGCGCGAGCAGATCGTCGACAACGCCGGGGTCGTTTACAAGCCGCTTGAAGCGGTGTTTGTCGACGAACCCTGGTACTGCGGTc                                                                                                                                     >  7:121248/1‑148 (MQ=255)                      tttGGCTGAGGGCCTCCGCCAGCGGCTTGCCGGCTTCGGCGGGCTGATCGGCGAATTGCGCGAGCAGATCGTCGACAACGCCGGGGTCGTTTACAAGCCGCTTGAAGCGGTGTTTGTCGACGAACCCTGGTACTGCGGTCGAGtgctgc                                                                                                                            <  2:171268/149‑1 (MQ=255)                        tGGCTGATGGCCTCCGCCAGCGGCTTGCCGGCTTCGGCGGGCTGATCGGCGAATTGCGCGAGCAGATCGTCGACAACGCCGGGGTCGTTTACAAGCCGCTTGAAGCGGTGTTTGTCGACGAACCCTGGTACTGCGGTCGAGtgctgc                                                                                                                            <  5:210875/147‑1 (MQ=255)                        cccaggtgtggcgtggtggcatgggcggcatccccgatcagcagcactcgaccgcagtaccagggtTCGTCGACAACGCCGGGGTCGTTTACAAGCCGCTTGAAGCGGTGTTTGTCGACGaa                                                                                                                                                     <  4:217743‑M1/56‑1 (MQ=255)                        cccaggtgtggcgtggtggcatgggcggcatccccgatcagcagcactcgaccgcagtaccagggtTCGTCGACAACGCCGGGGTCGTTTACAAGCCGCTTGAAGCGGTGTTTGTCGACGaa                                                                                                                                                     >  3:217743‑M1/67‑122 (MQ=255)                         ggCTGATGGCCTCCGCCAGCGGCTTGCCGGCTTCGGCGGGCTGATCGGCGAATTGCGCGAGCAGATCGTCGACAACGCCGGGGTCGTTTACAAGCCGCTTGAAGCGGTGTTTGTCGACGAACCCTGGTACTGCGGTCGAGTGctgctg                                                                                                                          <  5:277984/148‑1 (MQ=255)                            tGATGGCCTCCGCCAGCGGCTTGCCGGCTTCGGCGGGCTGATCGGCGAATTGCGCGAGCAGATCGTCGACAACGCCGGGGTCGTTTACAAGCCGCTTGAAGCGGTGTTTGTCGACGAACCCTGGTACTGCGGTCGAGTGCTGCTGATCg                                                                                                                      >  8:109371/1‑149 (MQ=255)                               tGGCCTCCGCCAGCGGCTTGCCGGCTTCGGCGGGCTGATCGGCGAATTGCGCGAGCAGATCGTCGACAACGCCGGGGTCGTTTACAAGCCGCTTGAAGCGGTGTTTGTCGACGAACCCTGGTACTGCGGTCGAGTGCTGCTGATCggg                                                                                                                    >  4:156377/1‑148 (MQ=255)                                ggCCTCCGCCAGCGGCTTGCCGGCTTCGGCGGGCTGATCGGCGAATTGCGCGAGCAGATCGTCGACAACGCCGGGGTCGTTTACAAGCCGCTTGAAGCGGTGTTTGTCGACGAACCCTGGTACTGCGGTCGAGTGCTGCTGATCgggg                                                                                                                   <  8:201253/148‑1 (MQ=255)                                   cTCCGCCAGCGGCTTGCCGGCTTCGGCGGGCTGATCGGCGAATTGCGCGAGCAGATCGTCGACAACGCCGGGGTCGTTTACAAGCCGCTTGAAGCGGTGTTTGTCGACGAACCCTGGTACTGCg                                                                                                                                        >  8:12434/1‑124 (MQ=255)                                   cTCCGCCAGCGGCTTGCCGGCTTCGGCGGGCTGATCGGCGAATTGCGCGAGCAGATCGTCGACAACGCCGGGGTCGTTTACAAGCCGCTTGAAGCGGTGTTTGTCGACGAACCCTGGTACTGCg                                                                                                                                        <  7:12434/124‑1 (MQ=255)                                    tCCGCCAGCGGCTTGCCGGCTTCGGCGGGCTGATCGGCGAATTGCGCGAGCAGATCGTCGACAACGCCGGGGTCGTTTACAAGCCGCTTGAAGCGGTGTTTGTCGACGAACCCTGGTACTGCGGTCGAGTGCTGCTGATCGGGGATgcc                                                                                                              >  2:100219/1‑149 (MQ=255)                                         cAGCGGCTTGCCGGCTTCGGCGGGCTGATCGGCGAATTGCGCGAGCAGATCGTCGACAACGCCGGGGTCGTTTACAAGCCGCTTGAAGCGGTGTTTGTCGACGAACCCTGGTACTGCGGTCGAGTGCTGCTGATCGGGGATGCCGCCCa                                                                                                         <  6:53397/149‑1 (MQ=255)                                                      gCTTCGGCGGGCTGATCGGCGAATTGCGCGAGCAGATCGTCGACAACGCCGGGGTCGTTTACAAGCCGCTTGAAGCGGTGTTTGTCGACGAACCCTGGTACTGCGGTCGAGTGCTGCTGATCGGGGATGCCGCCCATGCCACCACGCca                                                                                            <  6:44154/149‑1 (MQ=255)                                                              gggCTGATCGGCGAATTGCGCGAGCAGATCGTCGACAACGCCGGGGTCGTTTACAAGCCGCTTGAAGCGGTGTTTGTCGACGAACCCTGGTACTGCGGTCGAGTGCTGCTGATCGGGGATGCCGCCCATGCCACCACGCCACACCTggg                                                                                    <  8:121248/149‑1 (MQ=255)                                                                 cTGATCGGCGAATTGCGCGAGCAGATCGTCGACAACGCCGGGGTCGTTTACAAGCCGCTTGAAGCGGTGTTTGTCGACGAACCCTGGTACTGCGGTCGAGTGCTGCTGATCGGGGATGCCGCCCATGCCACCACGCCACACCTgggg                                                                                   >  3:89939/1‑147 (MQ=255)                                                                    aTCGGCGAATTGCGCGAGCAGATCGTCGACAACGCCGGGGTCGTTTACAAGCCGCTTGAAGCGGTGTTTGTCGACGAACCCTGGTACTGCGGTCGAGTGCTGCTGATCGGGGATGCCGCCCATGCCACCACGCCACACCTggggcaggg                                                                              <  3:50543/149‑1 (MQ=255)                                                                     tCGGCGAATTGCGCGAGCAGATCGTCGACAACGCCGGGGTCGTTTACAAGCCGCTTGAAGCGGTGTTTGTCGACGAACCCTGGTACTGCGGTCGAGTGCTGCTGATCGGGGATGCCGCCCATGCCACCACGCCACACCTggggcagggg                                                                             >  5:80059/1‑149 (MQ=255)                                                                        gCGAATTGCGCGAGCAGATCGTCGACAACGCCGGGGTCGTTTACAAGCCGCTTGAAGCGGTGTTTGTCGACGAACCCTGGTACTGCGGTCGAGTGCTGCTGATCGGGGATGCCGCCCATGCCACCACGCCACACCTggggcaggggg                                                                            >  7:65540/1‑147 (MQ=255)                                                                         cGAATTGCGCGAGCAGATCGTCGACAACGCCGGGGTCGTTTACAAGCCGCTTGAAGCGGTGTTTGTCGACGAACCCTGGTACTGCGGTCGAGTGCTGCTGATCGGGGATGCCGCCCATGCCACCACGCCACACCTggggcagggggcag                                                                         <  6:80059/149‑1 (MQ=255)                                                                                cgcgAGCAGATCGTCGACAACGCCGGGGTCGTTTACAAGCCGCTTGAAGCGGTGTTTGTCGACGAACCCTGGTACTGCGGTCGAGTGCTGCTGATCGGGGATGCCGCCCATGCCACCACGCCACACCTgggg                                                                                   <  1:66087/132‑1 (MQ=255)                                                                                cgcgAGCAGATCGTCGACAACGCCGGGGTCGTTTACAAGCCGCTTGAAGCGGTGTTTGTCGACGAACCCTGGTACTGCGGTCGAGTGCTGCTGATCGGGGATGCCGCCCATGCCACCACGCCACACCTgggg                                                                                   >  2:66087/1‑132 (MQ=255)                                                                                  cgAGCAGATCGTCGACAACGCCGGGGTCGTTTACAAGCCGCTTGAAGCGGTGTTTGTCGACGAACCCTGGTACTGCGGTCGAGTGCTGCTGATCGGGGATGCCGCCCATGCCACCACGCCACACCTGGGGCAGGGGGCAGGCATGGCCa                                                                <  4:94066/149‑1 (MQ=255)                                                                                    aGCAGATCGTCGACAACGCCGGGGTCGTTTACAAGCCGCTTGAAGCGGTGTTTGTCGACGAACCCTGGTACTGCGGTCGAGTGCTGCTGATCGGGGATGCCGCCCATGCCACCACGCCACACCTGGGGCAGGGGGCAGGCATGGCCAtt                                                              <  3:156377/149‑1 (MQ=255)                                                                                    aGCAGATCGTCGACAACGCCGGGGTCGTTTACAAGCCGCTTGAAGCGGTGTTTGTCGACGAACCCTGGTACTGCGGTCGAGTGCTGCTGATCGGGGATGCCGCCCATGCCACCACGCCACACCTGGGGCAGGGGGCAGGCATGGCCAtt                                                              <  7:109371/149‑1 (MQ=255)                                                                                       aGATCGGCGACAACGCCGGGGGCGTTTACAAGCCGCTTGAAGCGGTGTTTGTCGACGAACCCTGGTACTGCGGTCGAGTGCTGCTGATCGGGGATGCCGCCCATGCCACCACGCCACACCTGGGGCAGGGGGCAGGCATGGCCATTGAg                                                           <  5:209144/149‑1 (MQ=255)                                                                                         ttcgtcgacaaacaccgcttcaagcggcttgtaaacgaccccggcgttgtcgacgaACCCTGGTACTGCGGTCGAGTGCTGCTGATCGGGGATGCCGCCCATGCCACCACGCCACACCTggg                                                                                    >  3:217743‑M2/57‑122 (MQ=255)                                                                                         ttcgtcgacaaacaccgcttcaagcggcttgtaaacgaccccggcgttgtcgacgaACCCTGGTACTGCGGTCGAGTGCTGCTGATCGGGGATGCCGCCCATGCCACCACGCCACACCTggg                                                                                    <  4:217743‑M2/66‑1 (MQ=255)                                                                                          TCGTCGACAACGCCGGGGTCGTTTACAAGCCGCTTGAAGCGGTGTTTGTCGACGAACCCTGGTACTGCGGTCGAGTGCTGCTGATCGGGGATGCCGCCCATGCCACCACGCCACACCTGGGGCAGGGGGCAGGCATGGCCATTGAGGa                                                         >  3:242187‑M1/1‑148 (MQ=255)                                                                                             tcgacaaacaccgcttcaagcggcttgtaaacgaccccggcgttgtcgacgaACCCTGGTACTGCGGTCGAGTGCTGCTGATCGGGGATGCCGCCCATGCCACCACGCCACACCTGGGGCAGGGGGCAGGCATGGCCATTGAGGACG‑cc                                                    >  2:161976‑M2/53‑149 (MQ=255)                                                                                             TCGACAACGCCGGGGTCGTTTACAAGCCGCTTGAAGCGGTGTTTGTCGACGAACCCTGGTACTGCGGTCGAGTGCTGCTGATCGGGGATGCCGCCCATGCCACCACGCCACACCTGGGGCAGGGGGCAGGCATGGCCATTGAGGACG‑cc                                                    <  7:96321‑M1/149‑1 (MQ=255)                                                                                                ACAACGCCGGGGTCGTTTACAAGCCGCTTGAAGCGGTGTTTGTCGACGAACCCTGGTACTGCGGTCGAGTGCTGCTGATCGGGGATGCCGCCCATGCCACCACGCCACACCTGGGGCAGGGGGCAGGCATGGCCATTGAGGACG‑CCgtg                                                 >  3:10326‑M1/1‑149 (MQ=255)                                                                                                ACAACGCCGGGGTCGTTTACAAGCCGCTTGAAGCGGTGTTTGTCGACGAACCCTGGTACTGCGGTCGAGTGCTGCTGATCGGGGATGCCGCCCATGCCACCACGCCACACCTGGGGCAGGGGGCAGGCATGGCCATTGAGGACG‑CCgtg                                                 <  1:48023‑M1/149‑1 (MQ=255)                                                                                                  AACGCCGGGGTCGTTTACAAGCCGCTTGAAGCGGTGTTTGTCGACGAACCCTGGTACTGCGGTCGAGTGCTGCTGATCGGGGATGCCGCCCATGCCACCACGCCACACCTGGGGCAGGGGGCAGGCATGGCCATTGAGGACG‑CCgtggt                                               <  7:124662‑M1/149‑1 (MQ=255)                                                                                                  AACGCCGGGGTCGTTTACAAGCCGCTTGAAGCGGTGTTTGTCGACGAACCCTGGTACTGCGGTCGAGTGCTGCTGATCGGGGATGCAGCCCATGCCACCACGCCACACCTGGGGCAGGGGGCAGGCATGGCCATTGAGGACG‑CCgtggt                                               <  4:279444‑M1/149‑1 (MQ=255)                                                                                                            tCGTTTACAAGCCGCTTGAAGCGGTGTTTGTCGACGAACCCTGGTACTGCGGTCGAGTGCTGCTGATCGGGGATGCCGCCCATGCCACCACGCCACACCTGGGGCAGGGGGCAGGCATGGCCATTGAGGACG‑CCGTGGTGCTCGCCgag                                     >  8:33119/1‑149 (MQ=255)                                                                                                              gTTTACAAGCCGCTTGAAGCGGTGTTTGTCGACGAACCCTGGTACTGCGGTCGAGTGCTGCTGATCGGGGATGCCGCCCATGCCACCACGCCACACCTGGGGCAGGGGGCAGGCATGGCCATTGAGGACG‑CCGTGGTGCTCGCCgag                                     >  6:103696/1‑147 (MQ=255)                                                                                                                     aGCCGCTTGAAGCGGTGTTTGTAGACGAACCCTGGTACTGCGGTCGAGTGCTGCTGATCGGGGATGCCGCCCATGCCACCACGCCACACCTGGGGCAGCGGGCAGGCATGGCCATTGAGGACG‑CCGTGGTGCTCGCCGAGGAGCTcccc                            >  7:47495/1‑149 (MQ=255)                                                                                                                                      tttGTCGACGAACCCTGGTACTGCGGTCGAGTGCTGCTGATCGGGGATGCCGCCCATGCCACCACGCCACACCTGGGGCAGGGGGCAGGCATGGCCATTGAGGACG‑CCGTGGTGCTCGCCGAGGAGCTCACCGCGGGt                      >  2:199474/1‑138 (MQ=255)                                                                                                                                      tttGGCGACGAACCCTGGTACTGCGGTCGAGTGCTGCTGATCGGGGATGCCGCCCATGCCACCACGCCACACCTGGGGCAGGGGGCAGGCATGGCCATTGAGGACGCCCGTGGTGCTCGCCGAGGAGCTCACCGCGGGt                      <  1:199474/139‑1 (MQ=255)                                                                                                                                       ttgtcgacgaACCCTGGTACTGCGGTCGAGTGCTGCTGATCGGGGATGCCGCCCATGCCACCACGCCACACCTGGGGCAGGGGGCAGGCATGGCCATTGAGGACG‑CCGTGGTGCTCGCCGAGGAGCTCACCGCGGGTGGCAGCCTCGAc          <  1:161976‑M2/139‑1 (MQ=255)                                                                                                                                            gacgaACCCTGGTACTGCGGTCGAGTGCTGCTGATCGGGGATGCCGCCCATGCCACCACGCCACACCTGGGGCAGGGGGCAGGCATGGCCATTGAGGa                                                         <  7:271040‑M2/93‑1 (MQ=255)                                                                                                                                            gacgaACCCTGGTACTGCGGTCGAGTGCTGCTGATCGGGGATGCCGCCCATGCCACCACGCCACACCTGGGGCAGGGGGCAGGCATGGCCATTGAGGa                                                         >  8:271040‑M2/6‑98 (MQ=255)                                                                                                                                               gaACCCTGGTACTGCGGTCGAGTGCTGCTGATCGGGGATGCCGCCCATGCCACCACGCCACACCTGGGGCAGGGGGCAGGCATGGCCATTGAGGACG‑CCGTGGTGCTCGCCGAGGAGCTCACCGCGGGTGGCAGCCTCGACGCGCAAtt  >  7:70841‑M2/3‑149 (MQ=255)                                                                                                                                                 |                                                                                                                                                    CCCCTGGATGGAACCGGCCGCTTTGGCTGATGGCCTCCGCCAGCGGCTTGCCGGCTTCGGCGGGCTGATCGGCGAATTGCGCGAGCAGATCGTCGACAACGCCGGGGTCGTTTACAAGCCGCTTGAAGCGGTGTTTGTCGACGAACCCTGGTACTGCGGTCGAGTGCTGCTGATCGGGGATGCCGCCCATGCCACCACGCCACACCTGGGGCAGGGGGCAGGCATGGCCATTGAGGACG‑CCGTGGTGCTCGCCGAGGAGCTCACCGCGGGTGGCAGCCTCGACGCGCAATT  >  NC_002947/3628894‑3629184

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.