New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4131110	41 (0.790)	8 (0.170)	6/246	NT	17.6%	intergenic (+22/+90)	PP_3634/PP_3635	GNAT family acetyltransferase/sulfonate ABC transporter permease
	?	NC_002947	= 4131172	37 (0.770)					intergenic (+84/+28)	PP_3634/PP_3635	GNAT family acetyltransferase/sulfonate ABC transporter permease

CTATCTGCTTAACCAGCAGGGTGAGGATGCAATGATCGAAGCGGAGCAGATGCGCGATGAGCGGCTGGATGAGCTGACCGCTCAAGCCCAGGAATGTGTGCGCCAGCGCAAGAACGTGCATTGATCCGATGGCCTGTTCGCGGGCTTGCCCGCGCCCACAGGAATACCGTAAGGCCCAAGGCCGGTGATGTACCTGTGGGAGCGGGCGAG‑CCCGCGAAGAAGCCCCATTGGCCTTTCAGCCATGCACCCAGCGCCGATGCAGCCCACGCGCCAGAGCATCCAGCA  >  NC_002947/4130965‑4131249                                                                                                                                                  |                                                                                                                                             cTATCTGCTTAACCAGCAGGGTGAGGATGCAATGATCGAAGCGGAGCAGATGCGCGATGAGCGGCTGGATGAGCTGACCGCTCAAGCCCAGGAATGTGTGCGCCAGCGCAAGAACGTGCATTGATCCGATGGCCTGTTCGCGGGCTTGc                                                                                                                                           <  7:60750/149‑1 (MQ=255)    tCTGCTTAACCAGCAGGGTGAGGATGCAATGATCGAAGCGGAGCAGATGCGCGATGAGCGGCTGGATGAGCTGACCGCTCAAGCCCAGGAATGTGTGCGCCAGCGCAAGAACGTGCATTGATCCGATGGCCTGTTCGCGGGCTTGccc                                                                                                                                         <  8:220036/148‑1 (MQ=255)    tCTGCTTAACCAGCAGGGTGAGGATGCAATGATCGAAGCGGAGCAGATGCGCGATGAGCGGCTGGATGAGCTGACCGCTCAAGCCCAGGAATGTGTGCGCCAGCGCAAGAACGTGCATTGATCCGATGGCCTGTTCGCGGGCTTGCCcg                                                                                                                                        >  2:242403/1‑149 (MQ=255)        cTTAACCAGCAGGGTGAGGATGCAAAGATCGAAGCGGAGCAGATGCGCGATGAGCGGCTGGATGAGCTGACCGCTCAAGCCCAGGAATGAGTGCGCCAGCGCAAGAACGTGCATAGATCCGATGGCCTGTTCGCGGGCTTGCCACCGcc                                                                                                                                    >  1:56512/1‑149 (MQ=255)         ttAACCAGCAGGGTGAGGATGCAATGATCGAAGCGGAGCAGATGCGCGATGAGCGGCTGGATGAGCTGACCGCTCAAGCCCAGGAATGTGTGCGCCAGCGCAAGAACGTGCATTGATCCGATGGCCTGTTCGCGGGCTTGCCCGCGcc                                                                                                                                    >  2:285691/1‑148 (MQ=255)             ccAGCAGGGTGAGTATGCAATGATCGAAGCGGAGCAGATGCGCGATGAGCGGCTGGATGAGCTGACCGCTCAAGCCCAGGAATGTGTGCGCCAGCGCAAGAACGTGCATTGATCCGATGGCCTGTTCGCGGGCTTGCCCGCGCCCACAg                                                                                                                               <  3:43638/149‑1 (MQ=255)             ccAGCAGGGTGAGGATGCAATGATCGAAGCGGAGCAGATGCGCGATGAGCGGCTGGATGAGCTGACCGCTCAAGCCCAGGAATGTGTGCGCCAGCGCAAGAACGTGCATTGATCCGATGGCCTGTTCGCGGGCTTGCCCGCGCCCACAg                                                                                                                               <  5:264268/149‑1 (MQ=255)               agcagGGTGAGGATGCAATGATCGAAGCGGAGCAGATGCGCGATGAGCGGCTGGATGAGCTGACCGCTCAAGCCCAGGAATGTGTGCGCCAGCGCAAGAACGTGCATTGATCCGATGGCCTGTTCGCGGGCTTGCCCGCGCCCACAggg                                                                                                                             <  1:285691/149‑2 (MQ=255)                    ggTGAGGATGCAATGATCGAAGCGGAGCAGATGCGCGATGAGCGGCTGGATGAGCTGACCGCTCAAGCCCAGGAATGTGTGCGCCAGCGCAAGAACGTGCATTGATCCGATGGCCTGTTCGCGGGCTTGCCCGCGCCCACAGGAATAcc                                                                                                                        <  1:61674/149‑1 (MQ=255)                          gATGCAATGATCGAAGCGGAGCAGATGCGCGATGAGCGGCTGGATGAGCTGACCGCTCAAGCCCAGGAATGTGTGCGCCAGCGCAAGAACGTGCATTGATCCGATGGCCTGTTCGCGGGCTcgcccgctcccacaggtacatcaccggc                                                                                                                  >  2:319743‑M1/1‑121 (MQ=255)                               aaTGATCGAAGCGGAGCAGATGCGCGATGAGCGGCTGGATGAGCTGACCGCTCAAGCCCAGGAATGTGTGCGCCAGCGCAAGAACGTGCATTGATCCGATGGCCTGTTCGCGGGCTTGCCCGCGCCCCCAGGAATCCCGAAAGGccc                                                                                                               >  3:82419/1‑147 (MQ=255)                                    tCGAAGCGGAGCAGATGCGCGATGAGCGGCTGGATGAGCTGACCGCTCAAGCCCAGGAATGTGTGCGCCAGCGCAAGAACGTGCATTGATCCGATGGCCTGTTCGCGGGCTTGCCCGCGCCCACAGGAATACCGTAAGGCCCAAGGCCg                                                                                                        >  7:229525/1‑149 (MQ=255)                                        aGCGGAGCAGATGCGCGATGAGCGGCTGGATGAGCTGACCGCTCAAGCCCAGGAATGTGTGCGCCAGCGCAAGAACGTGCATTGATCCGATGGCCTGTTCGCGGGCTTGCCCGCGCCCACAGGAATACCGTAAGGCCCAAGGCCGGTGa                                                                                                    >  1:152188/1‑149 (MQ=255)                                         gCGGAGCAGATGCGCGATGAGCGGCTGGATGAGCTGACCGCTCAAGCCCAGGAATGTGTGCGCCAGCGCAAGAACGTGCATTGATCCGATGGCCTGTTCGCGGGCTTGCCCGCGCCCACAGGAATACCGTAAGGCCCAAGGCCGGTGAt                                                                                                   >  4:19224/1‑149 (MQ=255)                                                 gATGCGCGATGAGCGGCTGGATGAGCTGACCGCTCAAGCCCAGGAATGGGTGCGCCAGCGCAAGAACGTGCATTGATCCGATGGCCTGTTCGCGGGCTTGCCCGCGCCCACAGGAATACCGTAAGGCCCAAGGCCGGTGATGTACCtgt                                                                                           <  7:17786/149‑1 (MQ=255)                                                  aTGCGCGATGAGCGGCTGGATGAGCTGACCGCTCAAGCCCAGGAATGTGTGCGCCAGCGCAAGAACGTGCATTGATCCGATGGCCTGTTCGCGGGCTTGCCCGCGCCCACAGGAATACCGTAAGGCCCAAGGCCGGGGAGGTACCtgtg                                                                                          >  7:164060/1‑149 (MQ=255)                                                   tGCGCGATGAGCGGCTGGATGAGCTGACCGCTCAAGCCCAGGAATGTGTGCGCCAGCGCAAGAACGTGCATTGATCCGATGGCCTGTTCGCGGGCTTGCCCGCGCCCACAGGAATACCGTAAGGCCCAAGGCCGGTGATGTACCTGTgg                                                                                         <  8:88049/149‑1 (MQ=255)                                                       cgATGAGCGGCTGGATGAGCTGACCGCTCAAGCCCAGGAATGTGTGCGCCAGCGCAAGAACGTGCATTGATCCGATGGCCTGTTCGCGGGCTcgcccgctcccacaggtacatcaccggccttgggccttacggtattcctgtgggcgc                                                                                     <  1:319743‑M1/149‑58 (MQ=255)                                                        gATGTGCGGCTGGATGTGCTGACCGCGCAAGGCCAGGAATGTTTGCGGCTGCGCAAGATCTTGCATTGTTCCTAGGGCCTGTTCGCGGGCTTGCCCGCTCCCAGTGGAATACCGTTAGGCCCATGGACTGTGATGTACCTGTGTGAGCg                                                                                    <  8:179992/149‑1 (MQ=255)                                                         aTGAGCGGCTGGATGAGCTGACCGCTCAAGCCCAGGAATGTGTGCGCCAGCGCAAGAACGTTCATTGATCCGATGGCCTGTTCGCGGGCTcgcccgctcccacaggtacatcaccggccttgggccttacggtattcctgtgggcgcgg                                                                                   <  8:219999‑M1/149‑60 (MQ=255)                                                                 cTGGATGAGCTGACCGCTCAAGCCCAGGAATGTGTGCGCCAGCGCAAGAACGTGCATTGATCCGATGGCCTGTTCGCGGGCTTGCCCGCGCCCACAGGAATACCGTAAGGCCCaa                                                                                                             >  8:70409/1‑115 (MQ=255)                                                                 cTGGATGAGCTGACCGCTCAAGCCCAGGAATGTGTGCGCCAGCGCAAGAACGTGCATTGATCCGATGGCCTGTTCGCGGGCTTGCCCGCGCCCACAGGAATACCGTAAGGCCCaa                                                                                                             <  7:70409/115‑1 (MQ=255)                                                                        aGCTGCCCGCTCAAGCCCAGGAATGTGTGCGCCAGCGCAAGAACGTGCATTGATCCGATGGCCTGTTCGCGGGCTtgcccgctcccacaggtacatcaccggccttgggccttacggtattcctgtgggcgcgggcaagcccgcgaaca                                                                    <  7:146438‑M1/149‑75 (MQ=255)                                                                          cTGACCGCTCAAGCCCAGGAATGTGTGCGCCAGCGCAAGAACGTGCATTGATCCGATGGCCTGTTCGCGGGCTTGCCCGCGCCCACAGGAATACCGTAAGGCCCAAGGCCGGTGATGTACCTGTGGGAGCGGGCGAG‑CCCGCGaagaag                                                                 <  1:242403/149‑1 (MQ=255)                                                                          cTGACCGCTCAAGCCCAGGAATGTGTGCGCCAGCGCAAGAACGTGCATTGATCCGATGGCCTGTTCGCGGGCTTGCCCGCGCCCACAGGAATACCGTAAGGCCCAAGGCCGGTGATGTACCTGGGGGAGCGGGCGAG‑CCCGCGaagaag                                                                 >  8:265364/1‑149 (MQ=255)                                                                             aCCGCTCAAGCCCAGGAATGTGTGCGCCAGCGCAAGAACGTGCATTGATCCGATGGCCTGTTCGCGGGCTTGCCCGCGCCCACAGGAATACCGTAAGGCCCAAGGCCGGTGATGTACCTGTGGGAGCGGGCGAG‑CCCGCGAAGAAGccc                                                              <  4:201150/149‑1 (MQ=255)                                                                               cGCTCAAGCCCAGGAATGTGTGCGCCAGCGCAAGAACGTGCATTGATCCGATGGCTTCTTCGCGGGCTcgcccgctcccacaggtacatcaccggccttgggccttacggtattcctgtgggcgcgggcaagcccgcgaacaggccatc                                                             >  4:240212‑M1/1‑68 (MQ=255)                                                                               cGCTCAAGCCCAGGAATGTGTGCGCCAGCGCAAGAACGTGCATTGATCCGATGGCCTGTTCGCGGGCTcgcccgctcccacaggtacaacaccggccttgggccttacggtattcctgtgggcgcgg                                                                                   >  5:103481‑M1/1‑68 (MQ=255)                                                                               cGCTCAAGCCCAGGAATGTGTGCGCCAGCGCAAGAACGTGCATTGATCCGATGGCCTGTTCGCGGGCTcgcccgctcccacaggtacaacaccggccttgggccttacggtattcctgtgggcgcgg                                                                                   <  6:103481‑M1/127‑60 (MQ=255)                                                                               cGCTCAAGCCCAGGAATGTGTGCGCCAGCGCAAGAACGTGCATTGATCCGATGGCCTGTTCGCGGGCTTGCCCGCGCCCACAGGAATACCGTAAGGCCCAAGGCCGGTGATGTACCTGTGGGAGCGGGCGAG‑CCCGCGAAGAAGCCCCa                                                            >  2:148838/1‑149 (MQ=255)                                                                                 cTCAAGCCCAGGAATGTGTGCGCCAGCGCAAGAACGTGCATTGATCCGATGGCCTGTTCGCGGGCTTGCCCGCGCCCACAGGAATACCGTACGGCCCAAGGCCGGTGATGTACCTGTGGGAGCGGGCGAG‑CCCGCGAAGAAGCCCCAtt                                                          >  4:18823/1‑149 (MQ=255)                                                                                 cTCAAGCCCAGGAATGTGTGCGCCAGCGCAAGAACGTGCATTGATCCGATGGCCTGTTCGCGGGCTTGCCCGCGCCCACAGGAATACCGTAAGGCCCAAGGCCGGTGATGTACCTGTGGGAGCGGGCGAG‑CCCGCGAAGAAGCCCCAtt                                                          <  8:229525/149‑1 (MQ=255)                                                                                  tCAAGCCCAGGAATGTGTGCGCCAGCGCAATAACGTGCATTGATCCGATGGCCTGTTCGCGGGCTTGCCCGCGCCCACAGGAATACCGTAAGGCCCAAGGCCGGTGATGTACCTGTGGGAGCGGGCGAG‑CCCGCGAAGAAGCCCCATTg                                                         >  1:28781/1‑149 (MQ=255)                                                                                  tCAAGCCCAGGAATGTGTGCGCCAGCGCAAGAACGTGCATTGATCCGATGGCCTGTTCGCGGGCTTGCCCGCGCCCACAGGAATACCGTAAGGCCCAAGGCCGGTGATGTACCTGTGGGAGCGGGCGAC‑CCCGCGAAGAAGCCCCATTg                                                         >  3:300644/1‑149 (MQ=255)                                                                                   cAAGCCCAGGAATGTGTGCGCCAGCGCAAGAACGTGCATTGATCCGATGGCTTCTTCGCGGGCTcgcccgctcccacaggtacatcaccggccttgggccttacggtattcctgtgggcgcgggcaagcccgcgaacaggccatcggat                                                         <  3:240212‑M1/149‑86 (MQ=255)                                                                                          cgtactgtgggCGCCCGCTCATGAACGTGAATTTCTCGGTTGGCCTGTGCGGGGGCTGGCCGCGGGCCACAGCAATACCGTAAGGCCCAAGGCCGGTTATTTACCTGTGGGAGCGGGCGAG‑CCCGCGAAGAAGCCCCATTGGCCTTTCa                                                 <  8:164060/144‑1 (MQ=255)                                                                                                      gcCAGCGCAAGAACGTGCATTGATCCGATGGCCTGTTCGCGGGCTTGCCCGCGCCCACAGGAATACCGTAAGGCCCAAGGCCGGTGATGTACCTGTGGGAGCGGGCGAG‑CCCGCGAAGAAGCCCCATTGGCCTTTCAGCCATGCACCCa                                     >  6:211701/1‑149 (MQ=255)                                                                                                       ccAGCGCAAGAACGTGCATTGATCCGATGGCCTGTTCGCGGGCTTGCCCGCGCCCACAGGAATACCGTAAGGCCCAAGGCCGGTGAGGTACCTGTGGGAGCGGGCGAG‑CCCGCGAAGCAGCCCCATTGGCCTTTCAGCCATGCACCCAg                                    >  6:204091/1‑149 (MQ=255)                                                                                                              aaGAACGTGCATTGATCCGATGGCCTGTTCGCGGGCTTGCCCGCGCCCACAGGAATACCGTAAGGCCCAAGGCCGGTGATGTACCTGTGGGAGCGGGCGAG‑CCCGCGAAGAAGCCCCATTGGCCTTTCAGCCATGCACCCAGCGCCGAt                             >  1:262431/1‑149 (MQ=255)                                                                                                                gAACGTGCATTGATCCGATGGCCTGTTCGCGGGCTTGCCCGCGCCCACAGGAATACCGTAAGGCCCAAGGCCGGTGATGTACCTGTGGGAGCGGGCGAG‑CCCGCGAAGAAGCCCCATTGGCCTTTCAGCCATGCACCCAGCGCCGATg                            >  7:51662/1‑148 (MQ=255)                                                                                                                    gTGCATTGATCCGATGGCCTGTTCGCGGGCTTGCCCGCGCCGACAGGAATACCGTAAGGCCCAAGGCCGGTGATGTACCTGTGGGAGCGGGCGAG‑CCCGCGAAGAAGCCCCATTGGCCTTTCAGCCATGCACCCAGCGCCGATGCAGcc                       >  3:148451/1‑149 (MQ=255)                                                                                                                        aTTGATCCGATGGCCTGTTCGCGGGCTTGCCCGCGCCCACAGGAATACCGTAAGGCCCAAGGCCGGTGATGTACCTGTGGGAGCGGGCGAGCCCCGCGAAGAAGCCCCATTGGCCTTTCa                                                 <  1:168935/120‑1 (MQ=255)                                                                                                                            aTCCGATGGCCTGTTCGCGGGCTTGCCCGCGCCCACAGGAATACCGTAAGGCCCAAGGCCGGTGATGTACCTGTGGGAGCGGGCGagcccgcgaagaagccatcggatcaatgcacgttcttgcgctggcgcacacattcctgggcttg                <  3:240212‑M2/149‑65 (MQ=255)                                                                                                                              ccGATGGCCTGTTCGCGGGCTTGCCCGCGCCCACAGGAATACCGTAAGGCCCAAGGCCGGTGATGTACCTGTGGGAGCGGGCGAG‑CCCGCGAAGAAGCCCCATTGGCCTTTCAGCCATGCACCCAGCGCCGATGCAGCCCACGCGCCag             <  3:19224/149‑1 (MQ=255)                                                                                                                               cGATGGCCTGTTCGCGGGCTTGCCCGCGCCTACAGGAATACCGTAAGGCCCAAGGCCGGTGATGTACCTGTGGGAGCGGGCGAG‑CCCGCGAAGAAGCCCCATTGGCCTTTCAGCCATGCACCCAGCGCCGATGCAGCCCACGCGCCaga            <  4:148451/149‑1 (MQ=255)                                                                                                                                gATGGCCTGTTCGCGGGCTTGCCCGCGCCCACAGGAATACCGTAAGGCCCAAGGCCGGTGATGTACCTGTGGGAGCGGGCGagcccgcgaagaagccatcggatcaatgcacgttcttgcgctggcgcacacattcctgggcttgagcg            >  4:240212‑M2/1‑81 (MQ=255)                                                                                                                                    ggcTGTTGGCGGGGTTGCGCGAGGCGAGAGGAATAGCGTAAGGCCCAAGGCCGGTGATGTACCTGTGGGAGCGGGCGAG‑CGGGCGAAGAAGCCCCATTGGCCTTTCAGCCATGCACCCTGCGCCGATGCAGCGCACGCGCCAGAGCATc       <  2:56512/147‑1 (MQ=255)                                                                                                                                    gCCTGTTCGCGGGCTTGCCCGCGCCCACAGGAATACCGTAAGGCCCAAGGCCGGTGATGTACCTGTGGGAGCGGGCGAG‑CCCGCGAAGAAGCCCCATTGGCCTTTCAGCCATGCACCCAGCGCCGATGCAGCCCACGCGCCAGAGCATc       <  1:148838/149‑1 (MQ=255)                                                                                                                                    gCCTGTTCGCGGGCTTGCCCGCGCCCACAGGAATACCGTAAGGCCCAAGGCCGGTGATGTACCTGTGGGAGCGGGCGAG‑CCCGCGAAGAAGCCCCATTGGCCTTTCAGCCATGCACCCAGCGCCGATGCAGCCCACGCGCCAGAGCATc       <  2:262431/149‑1 (MQ=255)                                                                                                                                      cTGTTCGCGGGCTTGCCCGCGCCCACAGGAATACCGTAAGGCCCAAGGCCGGTGATGTACCTGTGGGAGCGGGCGAG‑CCCGCGAAGAAGCCCCATTGGCCTTTCAGCCATGCACCCAGCGCCGATGCAGCCCACGCGCCAGAGCATc       >  8:288717/1‑147 (MQ=255)                                                                                                                                       tGTTCGCGGGCTTGCCCGCGCCCACAGGAATACCGTAAGGCCCAAGGCCGGTGATGTACCTGTGGGAGCGGGCAagcccgcgaacaggccatcggatcaatgcacgttcttgcgctggcgcacacattcctgggcttgagcgggcagct     <  7:146438‑M2/149‑76 (MQ=255)                                                                                                                                         ttCGCGGGCTTGCCCGCGCCCACAGGAATACCGTAAGGCCCAAGGCCGGTGATGTACCTGTGGGAGCGGGCGAG‑CCCGCGAAGAAGCCCCATTGGCCTTTCAGCCATGCACCCAGCGCCGATGCAGCCCACGCGCCAGAGCATCCAg    <  3:18823/147‑1 (MQ=255)                                                                                                                                         ttCGCGGGCTTGCCCGCGCCCACAGGAATACCGTAAGGCCCAAGGCCGGTGATGTACCTGTGGGAGCGGGCGAG‑CCCGCGAAGAAGCCCCATTGGCCTTTCAGCCATGCACCCAGCGCCGATGCAGCCCACGCGCCAGAGCATCCAGca  >  3:104932/1‑149 (MQ=255)                                                                                                                                          gcgcgGGCAAGCCCGCGCCCACAGGAATACCGTAAGGCCCAAGGCCGGTGATGTACCTGTGGGAGCGGGCGAG‑CCCGCGAAGAAGCCCCATTGGCCTTTCAGCCATGCACCCAGCGCCGATGCAGCCCACGCGCCAGAGCATCCAGca  >  3:165938/2‑148 (MQ=255)                                                                                                                                                  |                                                                                                                                             CTATCTGCTTAACCAGCAGGGTGAGGATGCAATGATCGAAGCGGAGCAGATGCGCGATGAGCGGCTGGATGAGCTGACCGCTCAAGCCCAGGAATGTGTGCGCCAGCGCAAGAACGTGCATTGATCCGATGGCCTGTTCGCGGGCTTGCCCGCGCCCACAGGAATACCGTAAGGCCCAAGGCCGGTGATGTACCTGTGGGAGCGGGCGAG‑CCCGCGAAGAAGCCCCATTGGCCTTTCAGCCATGCACCCAGCGCCGATGCAGCCCACGCGCCAGAGCATCCAGCA  >  NC_002947/4130965‑4131249

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.