New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4131110	41 (0.790)	8 (0.170)	6/246	NT	17.6%	intergenic (+22/+90)	PP_3634/PP_3635	GNAT family acetyltransferase/sulfonate ABC transporter permease
	?	NC_002947	= 4131172	37 (0.770)					intergenic (+84/+28)	PP_3634/PP_3635	GNAT family acetyltransferase/sulfonate ABC transporter permease

CTGACCGCTCAAGCCCAGGAATGTGTGCGCCAGCGCAAGAACGTGCATTGATCCGATGGCCTGTTCGCGGGCTTGCCCGCGCCCACAGGAATACCGTAAGGCCCAAGGCCGGTGATGTACCTGTGGGAGCGGGCGAG‑CCCGCGAAGAAGCCCCATTGGCCTTTCAGCCATGCACCCAGCGCCGATGCAGCCCACGCGCCAGAGCATCCAGCACAAACCCCAGCACGCCAATCAGCAGCACCATCGCCATCAGTTCGGAATACGCCAGCCGGTCACGG  >  NC_002947/4131038‑4131314                                                                                                                                       |                                                                                                                                                cTGACCGCTCAAGCCCAGGAATGTGTGCGCCAGCGCAAGAACGTGCATTGATCCGATGGCCTGTTCGCGGGCTTGCCCGCGCCCACAGGAATACCGTAAGGCCCAAGGCCGGTGATGTACCTGTGGGAGCGGGCGAG‑CCCGCGaagaag                                                                                                                                  <  1:242403/149‑1 (MQ=255) cTGACCGCTCAAGCCCAGGAATGTGTGCGCCAGCGCAAGAACGTGCATTGATCCGATGGCCTGTTCGCGGGCTTGCCCGCGCCCACAGGAATACCGTAAGGCCCAAGGCCGGTGATGTACCTGGGGGAGCGGGCGAG‑CCCGCGaagaag                                                                                                                                  >  8:265364/1‑149 (MQ=255)    aCCGCTCAAGCCCAGGAATGTGTGCGCCAGCGCAAGAACGTGCATTGATCCGATGGCCTGTTCGCGGGCTTGCCCGCGCCCACAGGAATACCGTAAGGCCCAAGGCCGGTGATGTACCTGTGGGAGCGGGCGAG‑CCCGCGAAGAAGccc                                                                                                                               <  4:201150/149‑1 (MQ=255)      cGCTCAAGCCCAGGAATGTGTGCGCCAGCGCAAGAACGTGCATTGATCCGATGGCCTGTTCGCGGGCTTGCCCGCGCCCACAGGAATACCGTAAGGCCCAAGGCCGGTGATGTACCTGTGGGAGCGGGCGAG‑CCCGCGAAGAAGCCCCa                                                                                                                             >  2:148838/1‑149 (MQ=255)        cTCAAGCCCAGGAATGTGTGCGCCAGCGCAAGAACGTGCATTGATCCGATGGCCTGTTCGCGGGCTTGCCCGCGCCCACAGGAATACCGTACGGCCCAAGGCCGGTGATGTACCTGTGGGAGCGGGCGAG‑CCCGCGAAGAAGCCCCAtt                                                                                                                           >  4:18823/1‑149 (MQ=255)        cTCAAGCCCAGGAATGTGTGCGCCAGCGCAAGAACGTGCATTGATCCGATGGCCTGTTCGCGGGCTTGCCCGCGCCCACAGGAATACCGTAAGGCCCAAGGCCGGTGATGTACCTGTGGGAGCGGGCGAG‑CCCGCGAAGAAGCCCCAtt                                                                                                                           <  8:229525/149‑1 (MQ=255)         tCAAGCCCAGGAATGTGTGCGCCAGCGCAATAACGTGCATTGATCCGATGGCCTGTTCGCGGGCTTGCCCGCGCCCACAGGAATACCGTAAGGCCCAAGGCCGGTGATGTACCTGTGGGAGCGGGCGAG‑CCCGCGAAGAAGCCCCATTg                                                                                                                          >  1:28781/1‑149 (MQ=255)         tCAAGCCCAGGAATGTGTGCGCCAGCGCAAGAACGTGCATTGATCCGATGGCCTGTTCGCGGGCTTGCCCGCGCCCACAGGAATACCGTAAGGCCCAAGGCCGGTGATGTACCTGTGGGAGCGGGCGAC‑CCCGCGAAGAAGCCCCATTg                                                                                                                          >  3:300644/1‑149 (MQ=255)                 cgtactgtgggCGCCCGCTCATGAACGTGAATTTCTCGGTTGGCCTGTGCGGGGGCTGGCCGCGGGCCACAGCAATACCGTAAGGCCCAAGGCCGGTTATTTACCTGTGGGAGCGGGCGAG‑CCCGCGAAGAAGCCCCATTGGCCTTTCa                                                                                                                  <  8:164060/144‑1 (MQ=255)                             gcCAGCGCAAGAACGTGCATTGATCCGATGGCCTGTTCGCGGGCTTGCCCGCGCCCACAGGAATACCGTAAGGCCCAAGGCCGGTGATGTACCTGTGGGAGCGGGCGAG‑CCCGCGAAGAAGCCCCATTGGCCTTTCAGCCATGCACCCa                                                                                                      >  6:211701/1‑149 (MQ=255)                              ccAGCGCAAGAACGTGCATTGATCCGATGGCCTGTTCGCGGGCTTGCCCGCGCCCACAGGAATACCGTAAGGCCCAAGGCCGGTGAGGTACCTGTGGGAGCGGGCGAG‑CCCGCGAAGCAGCCCCATTGGCCTTTCAGCCATGCACCCAg                                                                                                     >  6:204091/1‑149 (MQ=255)                                     aaGAACGTGCATTGATCCGATGGCCTGTTCGCGGGCTTGCCCGCGCCCACAGGAATACCGTAAGGCCCAAGGCCGGTGATGTACCTGTGGGAGCGGGCGAG‑CCCGCGAAGAAGCCCCATTGGCCTTTCAGCCATGCACCCAGCGCCGAt                                                                                              >  1:262431/1‑149 (MQ=255)                                       gAACGTGCATTGATCCGATGGCCTGTTCGCGGGCTTGCCCGCGCCCACAGGAATACCGTAAGGCCCAAGGCCGGTGATGTACCTGTGGGAGCGGGCGAG‑CCCGCGAAGAAGCCCCATTGGCCTTTCAGCCATGCACCCAGCGCCGATg                                                                                             >  7:51662/1‑148 (MQ=255)                                           gTGCATTGATCCGATGGCCTGTTCGCGGGCTTGCCCGCGCCGACAGGAATACCGTAAGGCCCAAGGCCGGTGATGTACCTGTGGGAGCGGGCGAG‑CCCGCGAAGAAGCCCCATTGGCCTTTCAGCCATGCACCCAGCGCCGATGCAGcc                                                                                        >  3:148451/1‑149 (MQ=255)                                               aTTGATCCGATGGCCTGTTCGCGGGCTTGCCCGCGCCCACAGGAATACCGTAAGGCCCAAGGCCGGTGATGTACCTGTGGGAGCGGGCGAGCCCCGCGAAGAAGCCCCATTGGCCTTTCa                                                                                                                  <  1:168935/120‑1 (MQ=255)                                                   aTCCGATGGCCTGTTCGCGGGCTTGCCCGCGCCCACAGGAATACCGTAAGGCCCAAGGCCGGTGATGTACCTGTGGGAGCGGGCGagcccgcgaagaagccatcggatcaatgcacgttcttgcgctggcgcacacattcctgggcttg                                                                                 <  3:240212‑M2/149‑65 (MQ=255)                                                     ccGATGGCCTGTTCGCGGGCTTGCCCGCGCCCACAGGAATACCGTAAGGCCCAAGGCCGGTGATGTACCTGTGGGAGCGGGCGAG‑CCCGCGAAGAAGCCCCATTGGCCTTTCAGCCATGCACCCAGCGCCGATGCAGCCCACGCGCCag                                                                              <  3:19224/149‑1 (MQ=255)                                                      cGATGGCCTGTTCGCGGGCTTGCCCGCGCCTACAGGAATACCGTAAGGCCCAAGGCCGGTGATGTACCTGTGGGAGCGGGCGAG‑CCCGCGAAGAAGCCCCATTGGCCTTTCAGCCATGCACCCAGCGCCGATGCAGCCCACGCGCCaga                                                                             <  4:148451/149‑1 (MQ=255)                                                       gATGGCCTGTTCGCGGGCTTGCCCGCGCCCACAGGAATACCGTAAGGCCCAAGGCCGGTGATGTACCTGTGGGAGCGGGCGagcccgcgaagaagccatcggatcaatgcacgttcttgcgctggcgcacacattcctgggcttgagcg                                                                             >  4:240212‑M2/1‑81 (MQ=255)                                                           ggcTGTTGGCGGGGTTGCGCGAGGCGAGAGGAATAGCGTAAGGCCCAAGGCCGGTGATGTACCTGTGGGAGCGGGCGAG‑CGGGCGAAGAAGCCCCATTGGCCTTTCAGCCATGCACCCTGCGCCGATGCAGCGCACGCGCCAGAGCATc                                                                        <  2:56512/147‑1 (MQ=255)                                                           gCCTGTTCGCGGGCTTGCCCGCGCCCACAGGAATACCGTAAGGCCCAAGGCCGGTGATGTACCTGTGGGAGCGGGCGAG‑CCCGCGAAGAAGCCCCATTGGCCTTTCAGCCATGCACCCAGCGCCGATGCAGCCCACGCGCCAGAGCATc                                                                        <  1:148838/149‑1 (MQ=255)                                                           gCCTGTTCGCGGGCTTGCCCGCGCCCACAGGAATACCGTAAGGCCCAAGGCCGGTGATGTACCTGTGGGAGCGGGCGAG‑CCCGCGAAGAAGCCCCATTGGCCTTTCAGCCATGCACCCAGCGCCGATGCAGCCCACGCGCCAGAGCATc                                                                        <  2:262431/149‑1 (MQ=255)                                                             cTGTTCGCGGGCTTGCCCGCGCCCACAGGAATACCGTAAGGCCCAAGGCCGGTGATGTACCTGTGGGAGCGGGCGAG‑CCCGCGAAGAAGCCCCATTGGCCTTTCAGCCATGCACCCAGCGCCGATGCAGCCCACGCGCCAGAGCATc                                                                        >  8:288717/1‑147 (MQ=255)                                                              tGTTCGCGGGCTTGCCCGCGCCCACAGGAATACCGTAAGGCCCAAGGCCGGTGATGTACCTGTGGGAGCGGGCAagcccgcgaacaggccatcggatcaatgcacgttcttgcgctggcgcacacattcctgggcttgagcgggcagct                                                                      <  7:146438‑M2/149‑76 (MQ=255)                                                                ttCGCGGGCTTGCCCGCGCCCACAGGAATACCGTAAGGCCCAAGGCCGGTGATGTACCTGTGGGAGCGGGCGAG‑CCCGCGAAGAAGCCCCATTGGCCTTTCAGCCATGCACCCAGCGCCGATGCAGCCCACGCGCCAGAGCATCCAg                                                                     <  3:18823/147‑1 (MQ=255)                                                                ttCGCGGGCTTGCCCGCGCCCACAGGAATACCGTAAGGCCCAAGGCCGGTGATGTACCTGTGGGAGCGGGCGAG‑CCCGCGAAGAAGCCCCATTGGCCTTTCAGCCATGCACCCAGCGCCGATGCAGCCCACGCGCCAGAGCATCCAGca                                                                   >  3:104932/1‑149 (MQ=255)                                                                 gcgcgGGCAAGCCCGCGCCCACAGGAATACCGTAAGGCCCAAGGCCGGTGATGTACCTGTGGGAGCGGGCGAG‑CCCGCGAAGAAGCCCCATTGGCCTTTCAGCCATGCACCCAGCGCCGATGCAGCCCACGCGCCAGAGCATCCAGca                                                                   >  3:165938/2‑148 (MQ=255)                                                                             ccGCGCCCACAGGAATACCGTAAGGCCCAAGGCCGGTGTTGTACCTGTGGGAGCGGGCGagcccgcgaacaggccatcggatcaatgcacgttcttgcgctggcgcacacattcctgggcttgagcg                                                                             >  5:103481‑M2/1‑59 (MQ=255)                                                                             ccGCGCCCACAGGAATACCGTAAGGCCCAAGGCCGGTGTTGTACCTGTGGGAGCGGGCGagcccgcgaacaggccatcggatcaatgcacgttcttgcgctggcgcacacattcctgggcttgagcg                                                                             <  6:103481‑M2/127‑69 (MQ=255)                                                                             ccGCGCCCACAGGAATACCGTAAGGCCCAAGGCCGGTGATGTACCTGTGGGAGCGGGCGagcccgcgaacaggccatcggatcaatgaacgttcttgcgctggcgcacacattcctgggcttgagcggtcagctcatccagccgctcat                                                       <  8:219999‑M2/149‑91 (MQ=255)                                                                               gcgcCCACAGGAATACCGTAAGGCCCAAGGCCGGTGATGTACCTGTGGGAGCGGGCGagcccgcgaacaggccatcggatcaatgcacgttcttgcgctggcgcacacattcctgggcttgagcggtcagctcatccagccgctcatcg                                                     <  1:319743‑M2/149‑93 (MQ=255)                                                                                     acaGGAATACCGTAAGGCCCAAGGCCGGTGATGTACCTGTGGGAGCGGGCGAG‑CCCGCGAAGAAGCCCCATTGGCCTTTCAGCCATGCACCCAGCGCCGATGCAGCCCACGCGCCAGAGCATCCAGCACAAACCCCAGCACGCCAATca                                              >  8:95182/1‑149 (MQ=255)                                                                                       aGGAATACCGTAAGGCCCAAGGCCGGTGATGTACCTGTGGGAGCGGGCGCG‑CCCGCGAAGAAGCCCCATTGGCCTTTCAGCCATGCACCCAGCGCCGATGCAGCCCACGCGCCAGAGCATCCAGCACAAACCCCAGCACGCCAATcag                                             >  4:41491/1‑148 (MQ=255)                                                                                       aGGAATACCGTAAGGCCCAAGGCCGGTGATGTACCTGTGGGAGCGGGCGAG‑CCCGCGAAGAAGCCCCATTGGCCTTTCAGCCATGCACCCAGCGCCGATGCAGCCCACGCGCCAGAGCATCCAGCACAAACCCCAGCACGCCAATcagc                                            <  5:211701/149‑1 (MQ=255)                                                                                         gAATACCGTAAGGCCCAAGGCCGGTGATGTACCTGTGGGAGCGGGCGAG‑CCCGCGAAGAAGCCCCATTGGCCTTTCAGCCATGCACCCAGCGCCGATGCAGCCCACGCGCCAGAGCATCCAGCACAAACCCCAGCACGCCAATcagcag                                          >  3:49824/1‑149 (MQ=255)                                                                                               cGTAAGGCCCAAGGCCGGTGATGTACCTGTGGGAGCGGGCGAG‑CCCGCGAAGAAGCCCCATTGGCCTTTCAGCCATGCACCCAGCGCCGATGCAGCACACGCGCCAGAGCATCCAGCACAAACCCCAGCACGCCAATCAGCAGCACCAt                                    >  7:247168/1‑149 (MQ=255)                                                                                                gTAAGGCCCAAGGCCGGTGATGTACCTGTGGGAGCGGGCGAG‑CCCGCGAAGAAGCCCCATTGGCCTTTCAGCCATGCACCCAGCGCCGATGCAGCCCACGCGCCAGAGCATCCAGCACAAACCCCAGCACGCCAATCAGCAGCACCATc                                   <  3:41491/149‑1 (MQ=255)                                                                                                   aGGCCCAAGGCCGGTGATGTACCTGTGGGAGCGGGCGAG‑CCCGCGAAGAAGCCCCATTGGCCTTTCAGCCATGCACCCAGCGCCGATGCAGCCCACGCGCCAGAGCATCCAGCACAAACCCCAGCACGCCAATCAGCAGCACCATCGcc                                <  8:51662/149‑1 (MQ=255)                                                                                                       ccAAGGCCGGTGATGTACCTGTGGGAGCGGGCGAG‑CCCGCGAAGAAGCCCCATTGGCCTTTCAGCCATGCACCCAGCGCCGATGCGGCCCACGCGCCAGAGCATCCAGCACAAACCCCAGCACGCCAATCAGCAGCACCATCGCCAt                              >  2:170746/1‑147 (MQ=255)                                                                                                        cAAGGCCGGTGATGTACCTGTGGGAGCGGGCGAG‑CCCGCGAAGAAGCCCCATTGGCCTTTCAGCCATGCACCCAGCGCCGATGCAGCCCACGCGCCAGAGCATCCAGCACAAACCCCAGCACGCCAATCAGCAGCACCATCGCCATCAg                           >  8:174534/1‑149 (MQ=255)                                                                                                            gCCGGTGATGTACCTGTGGGAGCGGGCGagcccgcgaacaggccatcggatcaatgcacgttcttgcgctggcgcacacattcctgggcttgagcggtcagctcatccagccgctcatcgcgcatctgctccgcttcgatcattgcatc                        >  2:319743‑M2/1‑28 (MQ=255)                                                                                                              cGGGGATGTACCTGTGGGAGCGGGCGAG‑CCCGCGAAGAAGCCCCATTTGCCTTTCAGCCATGCACCCAGCGCCGATGCAGCCCACGCGCCAGATCATCCAGCACAAACCCCAGCACGCCAATCAGCAGCACCATCGCCATCAGTTCGGa                     <  7:265364/149‑1 (MQ=255)                                                                                                                        ccTGTGGGAGCGGGCGAG‑CCCGCGAAGAAGCCCCATTGGCCTTTCAGCCATGCACCCAGCGCCGATGCAGCCCACGCGCCAGAGCATCCAGCACAAACCCCAGCACGCCAATCAGCAGCACCATCGCCATCAGTTCGGAATACGCCAGc           <  4:104932/149‑1 (MQ=255)                                                                                                                          tgtgGGAGCGGGCGAG‑CCCGCGAAGAAGCCCCATTGGCCTTTCAGCCATGCACCCAGCGCCGATGCAGCCCACGCGCCAGAGCATCCAGCACAAACCCCAGCACGCCAATCAGCAGCACCATCGCCATCAGTTCGGAATACGCCAGCCg         >  2:9675/1‑149 (MQ=255)                                                                                                                               gAGCGGGCGAG‑CCCGCGAAGAAGCCCCATTGGCCTTTCAGCCATGCACCCAGCGCCGATGCAGCCCACGCGCCAGAGCATCCAGCACAAACCCCAGCACGCCAATCAGCAGCACCATCGCCATCAGTTCGGAATACGCCAGCCGGTCAc    <  4:165938/149‑1 (MQ=255)                                                                                                                                aGCGGGCGAG‑CCCGCGAAGAAGCCCCATTGGCCTTTCAGCCATGCACCCAGCGCCGATGCAGCCCACGCGCCAGAGCATCCAGCACAAACCCCAGCACGCCAATCAGCAGCACCATCGCCATCAGTTCGGAATACGCCAGCCGGTCACg   <  7:95182/149‑1 (MQ=255)                                                                                                                                 gCGGGCGAG‑CCCGCGAAGAAGCCCCATTGGCCTTTCAGCCATGCACCCAGCGCCGATGCAGCCCACGCGCCAGAGCATCCAGCACAAACCCCAGCACGCCAATCAGCAGCACCATCGCCATCAGTTCGGAATACGCCAGCCGGTCACgg  <  7:288717/149‑1 (MQ=255)                                                                                                                                       |                                                                                                                                                CTGACCGCTCAAGCCCAGGAATGTGTGCGCCAGCGCAAGAACGTGCATTGATCCGATGGCCTGTTCGCGGGCTTGCCCGCGCCCACAGGAATACCGTAAGGCCCAAGGCCGGTGATGTACCTGTGGGAGCGGGCGAG‑CCCGCGAAGAAGCCCCATTGGCCTTTCAGCCATGCACCCAGCGCCGATGCAGCCCACGCGCCAGAGCATCCAGCACAAACCCCAGCACGCCAATCAGCAGCACCATCGCCATCAGTTCGGAATACGCCAGCCGGTCACGG  >  NC_002947/4131038‑4131314

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.