New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4443076	46 (0.880)	3 (0.060)	3/256	NT	6.6%	coding (906/1314 nt)	nicT	metabolite transport protein NicT
	?	NC_002947	= 4443107	41 (0.820)					coding (875/1314 nt)	nicT	metabolite transport protein NicT

CCACGGTCATCACCAGGTTCTGGCTGAACAAGGTGCTGCTGGCCATGGCGATTGCACCAATGATAAACGGCACGATGATGTGCCAGCGGCGCTCGC‑GGTGGCGGTCGGAGCTGGCCCCGATCATGAGCATGCCGGCCAGCGCGGCCAGGCTTGGAATGGCCGTGAGCAGGCCGATATGGAAGGTGTCGCTGACGCCCGCATCGCGGATGAAGGTCGGCATCCAGAAGCCCATCGCATAGGCGCTGAGCAGGATCGAAAAGTCGATACCACCGAGCATCCAC  >  NC_002947/4442940‑4443220                                                                                                                                          |                                                                                                                                                 ccacGGTCATCACCAGGTTCTGGCTGAACAAGGTGCTGCTGGGCATGGCGATTGCACCAATGATAAACGGCACGATGATGTGCCAGCGGCGCTCGC‑GGTGGCGGTCGGAGCTGGCCCCGATCATGAGCATGCCGGCCAGCGCGGCCAgg                                                                                                                                      <  5:241086/149‑1 (MQ=255)    cGGTCATCACCAGGTTCTGGCTGAACAAGGTGCTGCTGGCCATGGCGATTGCACCAATGATAAACGGCACGATGATGTGCCAGCGGCGCTCGC‑GGTGGCGGTCGGAGCTGGCCCCGATCATGAGCATGCCGGCCAGCGCGGCCAGGCtt                                                                                                                                   <  8:230725/149‑1 (MQ=255)    cGGTCATCACCAGGTTCTGGCTGAACAAGGTGCTGCTGGCCATGGCGATTGCACCAATGATAAACGGCACGATGATGTGCCAGCGGCGCTCGC‑GGTGGCGGTCGGAGCTGGCCCCGATCATGAGCATGCCGGCCAGCGCGGCCAGGCtt                                                                                                                                   <  5:179025/149‑1 (MQ=255)      gTCATCACCAGGTTCTGGCTGAACAAGGTGCTGCTGGCCATGGCGATTGCACCAATGATAAACGGCACGATGATGTGCCAGCGGCGCTCGC‑GGTGGCGGTCGGAGCTGGCCCCGATCATGAGCATGCCGGCCAGCGCGGCCAGGCTTgg                                                                                                                                 <  3:78830/149‑1 (MQ=255)       tcatcaCCAGGTTCTGGCTGAACAAGGTGCTGCTGGCCATGGCGATTGCACCAATGATAAACGGCACGATGATGTGCCAGCGGCGCTCGC‑GGTGGCGGTCGGAGCTGGCCCCGATCATGAGCATGCCGGCCAGCGCGGCCAGGCTTGGa                                                                                                                                <  7:235411/149‑1 (MQ=255)          tcaCCAGGTTCTGGCTGAACAAGGTGCTGCTGGCCATGGCGATTGCACCAATGATAAACGGCACGATGATGTGCCAGCGGCGCTCGC‑GGTGGCGGTCGGAGCTGGCCCCGATCATGAGCATGCCGGCCAGCGCGGCCAGGCTTGGAATg                                                                                                                             <  2:243522/149‑1 (MQ=255)            aCCAGGTTCTGGCTGAACAAGGTGCTGCTGGCCATGGCGATTGCACCAATGATAAACGGCACGATGATGTGCCAGCGGCGCTCGC‑GGTGGCGGTCGGAGCTGGCCCCGATCATGAGCATGCCGGCCCGCGCGGCCAGGCTTGGAATGGc                                                                                                                           >  2:314991/1‑149 (MQ=255)             ccAGGTTCTGGCTGAACAAGGTGCTGCTGGCCATGGCGATTGCACCAATGATAAACGGCACGATGATGTGCCAGCGGCGCTCGC‑GGTGGCGGTCGGAGCTGGCCCCGATCATGAGCATGCCGGCCAGCGCGGCCAGGCTTGGAATGGcc                                                                                                                          >  3:258577/1‑149 (MQ=255)              cAGGTTCTGGCTGAACAAGGTGCTGCTGGCCATGGCGATTGCACCAATGATAAACGGCACGATGATGTGCCAGCGGCGCTCGC‑GGTGGCGGTCGGAGCTGGCCCCGATCATGAGCATGCCGGCCAGCGCGGCCAg                                                                                                                                       >  8:3007/1‑135 (MQ=255)              cAGGTTCTGGCTGAACAAGGTGCTGCTGGCCATGGCGATTGCACCAATGATAAACGGCACGATGATGTGCCAGCGGCGCTCGC‑GGTGGCGGTCGGAGCTGGCCCCGATCATGAGCATGCCGGCCAGCGCGGCCAg                                                                                                                                       <  7:3007/135‑1 (MQ=255)                           aaCAAGGTGCTGCTGGCCATGGCGATTGCACCAATGATAAACGGCACGATGATGTGCCAGCGGCGCTCGC‑GGTGGCGGTCGGAGCTGGCCCCGATCATGAGCATGCCGGCCtgctcacggccattccaagcctggccgcgctggccgg                                                                                                             <  5:220459‑M1/148‑38 (MQ=255)                                       ctgGCCATGGCGATTGCACCAATGATAAACGGCACGATGATGTGCCAGCGGCGCTCGC‑GGTGGCGGTCGGAGCTGGCCCCGATCATGAGCATGCCGGCCAGCGCGGCCAGGCTTGGAATGGCCGTGAGCAGGCCGATATGGAAGGTGTc                                                                                                >  2:178277/1‑149 (MQ=255)                                         ggCCATGGCGATTGCACCAATGATAAACGGCACGATGATGTGCCAGCGGCGCTCGC‑GGTGGCGGTCGGAGCTGGCCCCGATCATGAGCATGCCGGCCtgctcacggccattccaagcctggccgcgctggccggcatgctcatgatcgg                                                                                              >  8:132338‑M1/1‑97 (MQ=255)                                          gCCATGGCGATTGCACCAATGATAAACGGCACGATGATGTGCCAGCGGCGCTCGC‑GGTGGCGGTCGGAGCTGGCCCCGATCATGAGCATGCCGGCCtgctcacggccattccaagcctggccgcgctggccggcatgctcatgatcgg                                                                                              <  7:132338‑M1/148‑53 (MQ=255)                                             aTGGCGATTGCACCAATGATAAACGGCACGATGATGTGCCAGCGGCGCTCGC‑GGTGGCGGTCGGAGCTGGCCCCGATCATGAGCATGCCGGCCAGCGCGGCCAGGCTTGGAATGGCCGTGAGCAGGCCGATATGGAAGGTGTCGCTGAc                                                                                          >  8:99348/1‑149 (MQ=255)                                                  gATTGCACCAATGATAAACGGCACGATGATGTGCCAGCGGCGCTCGC‑GGTGGCGGTCGGAGCTGGCCCCGATCATGAGCATGCCGGCCAGCGCGGCCAGGCTTGGAATGGCCGTGAGCAGGCCGATATGGaa                                                                                                      <  1:84151/132‑1 (MQ=255)                                                  gATTGCACCAATGATAAACGGCACGATGATGTGCCAGCGGCGCTCGC‑GGTGGCGGTCGGAGCTGGCCCCGATCATGAGCATGCCGGCCAGCGCGGCCAGGCTTGGAATGGCCGTGAGCAGGCCGATATGGaa                                                                                                      >  2:84151/1‑132 (MQ=255)                                                       cACCAATGATAAACGGCACGATGATGTGCCAGCGGCGCTCGC‑GGTGGCGGTCGGAGCTGGCCCCGATCATGAGCATGCCGGCCAGCGCGGCCAg                                                                                                                                       >  4:245289/1‑94 (MQ=255)                                                       cACCAATGATAAACGGCACGATGATGTGCCAGCGGCGCTCGC‑GGTGGCGGTCGGAGCTGGCCCCGATCATGAGCATGCCGGCCAGCGCGGCCAg                                                                                                                                       <  3:245289/94‑1 (MQ=255)                                                       cACCAATGATAAACGGCACGATGATGTGCCAGCGGCGCTCGC‑GGTGGCGGTCGGAGCTGGCCCCGATCATGAGCATGCCGGCCAGCGCGGCCAGGCTTGGAATGGCCGTGAGCAGGCCGATATGGAAGGTGTCGCTGACGCCCGCATcg                                                                                >  4:219308/1‑149 (MQ=255)                                                       cACCAATGATAAACGGCACGATGATGTGCCAGCGGCGCTCGC‑GGTGGCGGTCGGAGCTGGCCCCGATCATGAGCATGCCGGCCAGCGCGGCCAGGCTTGGAATGGCCGTGAGCAGGCCGATATGGAAGGTGTCGCTGACGCCCGCATc                                                                                 <  4:228937/148‑1 (MQ=255)                                                          cAATGATAAACGGCACGATGATGTGCCAGCGGCGCTCGC‑GGTGGCGGTCGGAGCTGGCCCCGATCATGAGCATGCCGGCCAGCGCGGCCAGGCTTGGAATGGCCGTGAGCAGGCCGATATGGAAGGTGTCGCTGACGccc                                                                                      <  3:81257/140‑1 (MQ=255)                                                          cAATGATAAACGGCACGATGATGTGCCAGCGGCGCTCGC‑GGTGGCGGTCGGAGCTGGCCCCGATCATGAGCATGCCGGCCAGCGCGGCCAGGCTTGGAATGGCCGTGAGCAGGCCGATATGGAAGGTGTCGCTGACGccc                                                                                      >  4:81257/1‑140 (MQ=255)                                                           aaTGATAAACGGCACGATGATGTGCCAGCGGCGCTCGC‑GGTGGCGGTCGGAGCTGGCCCCGATCATGAGCATGCCGGCCAGCGCGGCCAGGCTTGGAATGGCCGTGAGCAggc                                                                                                                >  2:162097‑M2/1‑110 (MQ=255)                                                           aaTGATAAACGGCACGATGATGTGCCAGCGGCGCTCGC‑GGTGGCGGTCGGAGCTGGCCCCGATCATGAGCATGCCGGCCAGCGCGGCCAGGCTTGGAATGGCCGTGAGCAggc                                                                                                                <  1:162097‑M2/113‑4 (MQ=255)                                                                      gCACGATGATGTGCCAGCGGCGCTCGCAGGTGGCGGTCGGAGCGGGCCCCGATCATGAGCATGCCGGCCAGCGCGGCCAGGCTTGGAATGGCCGTGAGCAGGCCGATATGGAAGGTGTCGCTGACGCCCGCATCGCGGATGAAGGTCgg                                                                  >  1:15282/1‑149 (MQ=255)                                                                       cACGATGATGTGCCAGCGGCGCTCGC‑GGTGGCGGTCGGAGCTGGCCCCGATCATGAGCATGCCGGCCAGCGCGGCCAGGCTTGGAATGGCCGTGAGCAGGCCGATATGGAAGGTGTCGCTGACGCCCGCATCGCGGATGAAGGTCGGCa                                                                >  6:124778/1‑149 (MQ=255)                                                                        aCGATGATGTGCCAGCGGCGCTCGC‑GGTGGCGGTCGGAGCTGGCCCCGATCATGAGCATGCCGGCCAGCGCGGCCAGGCTTGGAATGGCCGTGAGCAGGCCGATATGGAAGGTGTCGCTGACGCCCGCATCGCGGATGAAGGTCGGCAt                                                               >  2:47554/1‑149 (MQ=255)                                                                         cGATGATGTGCCAGCGGCGCTCGC‑GGTGGCGGTCGGAGCTGGCCCCGATCATGAGCATGCCGGCCAGCGCGGCCAGGCTTGGAATGGCCGTGAGCAGGCCGATATGGAAGGTGTCTCTGACGCCCGCATCGCGGATGAAGGTCGGCATc                                                              <  4:258577/149‑1 (MQ=255)                                                                         cGATGATGTGCCAGCGGCGCTCGC‑GGTGGCGGTCGGAGCTGGCCCCGATCATGAGCATGCCGGCCAGCGCGGCCAGGCTTGGAATGGCCGTGAGCAGGCCGATATGGAAGGTGTCGCTGACGCCCGCATCGCGGATGAAGGTCGGCATc                                                              <  7:99348/149‑1 (MQ=255)                                                                           atgatgTGCCAGCGGCGCTCGC‑GGTGGCGGTCGGAGCTGGCCCCGATCATGAGCATGCCGGCCAGCGCGGCCAGGCTTGGAATGGCCGTGAGCAGGCCGATATGGAAGGTGTCGCTGACGCCCGCATCGCGGATGAAGGTCGGCATCCa                                                            <  1:178277/149‑1 (MQ=255)                                                                            tgatgTGCCAGCGGCGCTCGC‑GGTGGCGGTCGGAGCTGGCCCCGATCATGAGCATTCCGGCCAGCGCGGCCAGGCTTTGAATGGCCGTGAGCAGGCCGATATGGAAGGTGTCGCTGACGCCCGCATCGCGGATGAAGGTCGGCATCCAg                                                           <  1:314991/149‑1 (MQ=255)                                                                                  gCCAGCGGCGCTCGC‑GGTGGCGGTCGGAGCTGGCCCCGATCATGAGCATGCCGGCCAGCGCGGCCAGGCTTGGAATGGCCGTGAGCAGGCCGATATGGAAGGTGTCGCTGACGCCCGCATCGCGGATGAAGGTCGGCATCCAGAAGcc                                                      >  7:98363/1‑148 (MQ=255)                                                                                               gc‑gGTGGCGGTCGGAGCTGGCCCCGATCATGAGCATGCCGGCCAGCGCGGCCAGGCTTGGAATGGCCGTGAGCAGGCCGATATGGAAGGTGTCGCTGACGCCCGCATCGCGGATGAAGGTCGGCATCCAGAAGCCCATc                                                  >  4:46603/1‑139 (MQ=255)                                                                                               gc‑gGTGGCGGTCGGAGCTGGCCCCGATCATGAGCATGCCGGCCAGCGCGGCCAGGCTTGGAATGGCCGTGAGCAGGCCGATATGGAAGGTGTCGCTGACGCCCGCATCGCGGATGAAGGTCGGCATCCAGAAGCCCATc                                                  <  3:46603/139‑1 (MQ=255)                                                                                               gc‑gGTGGCGGTCGGAGCCGGCCCCGATCATGAGCATGCCGGCCAGCGCGGCCAGGCTTGGAATGGCCGTGAGCAGGCCGATATGGAAGGTGTCGCTGACGCCCGCATCGCGGATGAAGGTCGGCATCCAGAAGCCCATCGCATAGgc                                          <  2:15282/147‑1 (MQ=255)                                                                                                   gTGGCGGTCGGAGCTGGCCCCGATCATGAGCATGCCGGCCAGCGCGGCCAGGCTTGGAATGGCCGTGAGCAGGCCGATATGGAAGGTGTCGCTGACGCCCGCATCGCGGATGAAGGTCGGCATCCAGAAGCCCATCGCATAGGCGCTGa                                     <  1:47554/149‑1 (MQ=255)                                                                                                     ggCGGTCGGAGCTGGCCCCGATCATGAGCATGCCGGCCAGCGCGGCCAGGCTTGGAATGGCCGTGAGCAGGCCGATATGGAAGGTGTCGCTGACGCCCGCATCGCGGATGAAGGTCGGCATCCAGAAGCCCATCGCATAGGCGCTGAGc                                   <  8:98363/149‑1 (MQ=255)                                                                                                      gCGGTCGGAGCTGGCCCCGATCATGAGCATGCCGGCCAGCGCGGCCAGGCTTGGAATGGCCGTGAGCAGGCCGATATGGAAGGTGTCGCTGACGCCCGCATCGCGGATGAAGGTCGGCATCCAGAAGCCCATCGCATAGGCGCTGAg                                    >  1:92332/1‑147 (MQ=255)                                                                                                      gCGGTCGGAGCTGGCCCCGATCATGAGCATGCCGGCCAGCGCGGCCAGGCTTGGAATGGCCGTGAGCAGGCCGATATGGAAGGTGTCGCTGACGCCCGCATCGCGGATGAAGGTCGGCATCCAGAAGCCCATCGCATAGGCGCTGAg                                    >  2:241151/1‑147 (MQ=255)                                                                                                         gTCGGAGCTGGCCCCGATCATGAGCATGCCGGCCAGCGCGGCCAGGCTTGGAATGGCCGTGAGCAGGCCGATATGGAAGGTGTCGCTGACGCCCGCATCGCGGATGAAGGTCGGCATCCAGAAGCCCATCGCATAGGCGCTGAGCAGGa                               >  1:165685/1‑149 (MQ=255)                                                                                                              aGCTGGCCCCGATCATGAGCATGCCGGCCAGCGCGGCCAGGCTTGGAATGGCCGTGAGCAGGCCGATATGGAAGGTGTCGCTGACGCCCGCATCGCGGATGAAGGTCGGCATCCAGAAGCCCATCGCATAGGCGCTGAGCAGGATCGaa                          <  3:219308/149‑1 (MQ=255)                                                                                                                cTGGCCCCGATCATGAGCATGCCGGCCAGCGCGGCCAGGCTTGGAATGGCCGTGAGCAGGCCGATATGGAAGGTGTCGCTGACGCCCGCATCGCGGATGAAGGTCGGCATCCAGAAGCCCATCGCATAGGCGCTGAGCAGGATCGaaaa                        <  3:253483/149‑1 (MQ=255)                                                                                                                     cccGATCATGAGCATGCCGGCCAGCGCGGCCAGGCTTGGAATGGCCGTGAGCAGGCCGATATGGAAGGTGTCGCTGACGCCCGCATCGCGGATGAAGGTCGGCATCCAGAAGCCCATCGCATAGGCGCTGAGCAGGATCGAAAAGt                      >  6:153831/1‑146 (MQ=255)                                                                                                                     cccGATCATGAGCATGCCGGCCAGCGCGGCCAGGCTTGGAATGGCCGTGAGCAGGCCGATATGGAAGGTGTCGCTGACGCCCGCATCGCGGATGAAGGTCGGCATCCAGAAGCCCATCGCATAGGCGCTGAGCAGGATCGAAAAGt                      <  5:153831/146‑1 (MQ=255)                                                                                                                     cccGAGCATGAGCATGCCGGCCAGCGCGGCCAGGCTTGGAATGGCCGTGAGCAGGCCGATATGGAAGGTGTCGCTGACGCCCGCATCGCGGATGAAGGTCGGCATCCAGAAGCCCATCGCATAGGCGCTGAGCAGGATCGAAAAGTCGa                   <  8:300557/149‑1 (MQ=255)                                                                                                                      ccGATCATGAGCATGCCGGCCAGCGCGGCCAGGCTTGGAATGGCCGTGAGCAggccggcatgctcatgatcggggccagctccgaccgccaccgcgagcgccgctggcacatcatcgtgccgtttatcattggtgcaatcgccatggcc                  >  8:132338‑M2/1‑52 (MQ=255)                                                                                                                      ccGATCATGAGCATGCCGGCCAGCGCGGCCAGGCTTGGAATGGCCGTGAGCAggccggcatgctcatgatcggggccagctccgaccgccaccgcgagcgccgctggcacatcatcgtgccgtttatcattggtgcaatcgccatggc                   <  7:132338‑M2/148‑97 (MQ=255)                                                                                                                           cATGAGCATGCCGGCCAGCGCGGCCAGGCTTGGAATGGCCGTGAGCAGGCCGATATGGAAGGTGTCGCTGACGCCCGCATCGCGGATGAAGGTCGGCATCCAGAAGCCCATCGCATAGGCGCTGAGCAGGATCGAAAAGTCGATaccac             >  7:237197/1‑149 (MQ=255)                                                                                                                              gAGCATGCCGGCCAGCGCGGCCAGGCTTGGAATGGCCGTGAGCAGGCCGATATGGAAGGTGTCGCTGACGCCCGCATCGCGGATGAAGGTCGGCATCCAGAAGCCCATCGCATAGGCGCt                                       <  6:193732/120‑1 (MQ=255)                                                                                                                              gAGCATGCCGGCCAGCGCGGCCAGGCTTGGAATGGCCGTGAGCAGGCCGATATGGAAGGTGTCGCTGACGCCCGCATCGCGGATGAAGGTCGGCATCCAGAAGCCCATCGCATAGGCGCt                                       >  5:193732/1‑120 (MQ=255)                                                                                                                                  aTGCCGGCCAGCGCGGCCAGGCTTGGAATGGCCGTGAGCAGGCCGATATGGAAGGTGTCGCTGACGCCCGCATCGCGGATGAAGGTCGGCATCCAGAAGCCCATCGCATAGGCGCTGAGCAGGATCGAAAAGTCGATACCACCGAGCAt      <  2:165685/149‑1 (MQ=255)                                                                                                                                   tGCCGGCCAGCGCGGCCAGGCTTGGAATGGCCGTGAGCAGGCCGATATGGAAGGTGTCGCTGACGCCCGCATCGCGGATGAAGGTCGGCATCCAGAAGCCCATCGCATAGGCGCTGAGCAGGATCGAAAAGTCGATACCACCGAGCATc     <  2:92332/149‑1 (MQ=255)                                                                                                                                     ccGGCCAGCGCGGCCAGGCTTGGAATGGCCGTGAGCAggccggcatgctcatgatcggggccagctccgaccgccaccgcgagcgccgctggcacatcatcgtgccgtttatcattggtgcaatcgccatggccagcagcaccttgtt    <  5:220459‑M2/148‑112 (MQ=255)                                                                                                                                      cGGCCAGCGCGGCCAGGCTTGGAATGGCCGTGAGCAGGCCGATATGGAAGGTGTCGCTGACGCCCGCATCGCGGATGAAGGTCGGCATCCAGAAGCCCATCGCATAGGCGCTGAGCAGGATCGAAAAGTCGATACCACCGAGCATCcac  <  5:124778/149‑1 (MQ=255)                                                                                                                                        gCCtgctcacggccattccaagcctggccgcgctggccggcatgctcatgatcggggccagctccgaccgccaccgcgagcgccgctggcacatcatcgtgccgtttatcatt                                    >  2:162097‑M1/1‑3 (MQ=255)                                                                                                                                        gCCtgctcacggccattccaagcctggccgcgctggccggcatgctcatgatcggggccagctccgaccgccaccgcgagcgccgctggcacatcatcgtgccgtttatcatt                                    <  1:162097‑M1/113‑111 (MQ=255)                                                                                                                                          |                                                                                                                                                 CCACGGTCATCACCAGGTTCTGGCTGAACAAGGTGCTGCTGGCCATGGCGATTGCACCAATGATAAACGGCACGATGATGTGCCAGCGGCGCTCGC‑GGTGGCGGTCGGAGCTGGCCCCGATCATGAGCATGCCGGCCAGCGCGGCCAGGCTTGGAATGGCCGTGAGCAGGCCGATATGGAAGGTGTCGCTGACGCCCGCATCGCGGATGAAGGTCGGCATCCAGAAGCCCATCGCATAGGCGCTGAGCAGGATCGAAAAGTCGATACCACCGAGCATCCAC  >  NC_002947/4442940‑4443220

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.