New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4443076	46 (0.880)	3 (0.060)	3/256	NT	6.6%	coding (906/1314 nt)	nicT	metabolite transport protein NicT
	?	NC_002947	= 4443107	41 (0.820)					coding (875/1314 nt)	nicT	metabolite transport protein NicT

CTGGCCATGGCGATTGCACCAATGATAAACGGCACGATGATGTGCCAGCGGCGCTCGC‑GGTGGCGGTCGGAGCTGGCCCCGATCATGAGCATGCCGGCCAGCGCGGCCAGGCTTGGAATGGCCGTGAGCAGGCCGATATGGAAGGTGTCGCTGACGCCCGCATCGCGGATGAAGGTCGGCATCCAGAAGCCCATCGCATAGGCGCTGAGCAGGATCGAAAAGTCGATACCACCGAGCATCCACACCTTAAGGTTGAAGAAGCCATCGCGG  >  NC_002947/4442978‑4443247                                                                                                                                   |                                                                                                                                             ctgGCCATGGCGATTGCACCAATGATAAACGGCACGATGATGTGCCAGCGGCGCTCGC‑GGTGGCGGTCGGAGCTGGCCCCGATCATGAGCATGCCGGCCAGCGCGGCCAGGCTTGGAATGGCCGTGAGCAGGCCGATATGGAAGGTGTc                                                                                                                           >  2:178277/1‑149 (MQ=255)       aTGGCGATTGCACCAATGATAAACGGCACGATGATGTGCCAGCGGCGCTCGC‑GGTGGCGGTCGGAGCTGGCCCCGATCATGAGCATGCCGGCCAGCGCGGCCAGGCTTGGAATGGCCGTGAGCAGGCCGATATGGAAGGTGTCGCTGAc                                                                                                                     >  8:99348/1‑149 (MQ=255)            gATTGCACCAATGATAAACGGCACGATGATGTGCCAGCGGCGCTCGC‑GGTGGCGGTCGGAGCTGGCCCCGATCATGAGCATGCCGGCCAGCGCGGCCAGGCTTGGAATGGCCGTGAGCAGGCCGATATGGaa                                                                                                                                 >  2:84151/1‑132 (MQ=255)            gATTGCACCAATGATAAACGGCACGATGATGTGCCAGCGGCGCTCGC‑GGTGGCGGTCGGAGCTGGCCCCGATCATGAGCATGCCGGCCAGCGCGGCCAGGCTTGGAATGGCCGTGAGCAGGCCGATATGGaa                                                                                                                                 <  1:84151/132‑1 (MQ=255)                 cACCAATGATAAACGGCACGATGATGTGCCAGCGGCGCTCGC‑GGTGGCGGTCGGAGCTGGCCCCGATCATGAGCATGCCGGCCAGCGCGGCCAGGCTTGGAATGGCCGTGAGCAGGCCGATATGGAAGGTGTCGCTGACGCCCGCATcg                                                                                                           >  4:219308/1‑149 (MQ=255)                 cACCAATGATAAACGGCACGATGATGTGCCAGCGGCGCTCGC‑GGTGGCGGTCGGAGCTGGCCCCGATCATGAGCATGCCGGCCAGCGCGGCCAGGCTTGGAATGGCCGTGAGCAGGCCGATATGGAAGGTGTCGCTGACGCCCGCATc                                                                                                            <  4:228937/148‑1 (MQ=255)                    cAATGATAAACGGCACGATGATGTGCCAGCGGCGCTCGC‑GGTGGCGGTCGGAGCTGGCCCCGATCATGAGCATGCCGGCCAGCGCGGCCAGGCTTGGAATGGCCGTGAGCAGGCCGATATGGAAGGTGTCGCTGACGccc                                                                                                                 >  4:81257/1‑140 (MQ=255)                    cAATGATAAACGGCACGATGATGTGCCAGCGGCGCTCGC‑GGTGGCGGTCGGAGCTGGCCCCGATCATGAGCATGCCGGCCAGCGCGGCCAGGCTTGGAATGGCCGTGAGCAGGCCGATATGGAAGGTGTCGCTGACGccc                                                                                                                 <  3:81257/140‑1 (MQ=255)                     aaTGATAAACGGCACGATGATGTGCCAGCGGCGCTCGC‑GGTGGCGGTCGGAGCTGGCCCCGATCATGAGCATGCCGGCCAGCGCGGCCAGGCTTGGAATGGCCGTGAGCAggc                                                                                                                                           <  1:162097‑M2/113‑4 (MQ=255)                     aaTGATAAACGGCACGATGATGTGCCAGCGGCGCTCGC‑GGTGGCGGTCGGAGCTGGCCCCGATCATGAGCATGCCGGCCAGCGCGGCCAGGCTTGGAATGGCCGTGAGCAggc                                                                                                                                           >  2:162097‑M2/1‑110 (MQ=255)                                gCACGATGATGTGCCAGCGGCGCTCGCAGGTGGCGGTCGGAGCGGGCCCCGATCATGAGCATGCCGGCCAGCGCGGCCAGGCTTGGAATGGCCGTGAGCAGGCCGATATGGAAGGTGTCGCTGACGCCCGCATCGCGGATGAAGGTCgg                                                                                             >  1:15282/1‑149 (MQ=255)                                 cACGATGATGTGCCAGCGGCGCTCGC‑GGTGGCGGTCGGAGCTGGCCCCGATCATGAGCATGCCGGCCAGCGCGGCCAGGCTTGGAATGGCCGTGAGCAGGCCGATATGGAAGGTGTCGCTGACGCCCGCATCGCGGATGAAGGTCGGCa                                                                                           >  6:124778/1‑149 (MQ=255)                                  aCGATGATGTGCCAGCGGCGCTCGC‑GGTGGCGGTCGGAGCTGGCCCCGATCATGAGCATGCCGGCCAGCGCGGCCAGGCTTGGAATGGCCGTGAGCAGGCCGATATGGAAGGTGTCGCTGACGCCCGCATCGCGGATGAAGGTCGGCAt                                                                                          >  2:47554/1‑149 (MQ=255)                                   cGATGATGTGCCAGCGGCGCTCGC‑GGTGGCGGTCGGAGCTGGCCCCGATCATGAGCATGCCGGCCAGCGCGGCCAGGCTTGGAATGGCCGTGAGCAGGCCGATATGGAAGGTGTCTCTGACGCCCGCATCGCGGATGAAGGTCGGCATc                                                                                         <  4:258577/149‑1 (MQ=255)                                   cGATGATGTGCCAGCGGCGCTCGC‑GGTGGCGGTCGGAGCTGGCCCCGATCATGAGCATGCCGGCCAGCGCGGCCAGGCTTGGAATGGCCGTGAGCAGGCCGATATGGAAGGTGTCGCTGACGCCCGCATCGCGGATGAAGGTCGGCATc                                                                                         <  7:99348/149‑1 (MQ=255)                                     atgatgTGCCAGCGGCGCTCGC‑GGTGGCGGTCGGAGCTGGCCCCGATCATGAGCATGCCGGCCAGCGCGGCCAGGCTTGGAATGGCCGTGAGCAGGCCGATATGGAAGGTGTCGCTGACGCCCGCATCGCGGATGAAGGTCGGCATCCa                                                                                       <  1:178277/149‑1 (MQ=255)                                      tgatgTGCCAGCGGCGCTCGC‑GGTGGCGGTCGGAGCTGGCCCCGATCATGAGCATTCCGGCCAGCGCGGCCAGGCTTTGAATGGCCGTGAGCAGGCCGATATGGAAGGTGTCGCTGACGCCCGCATCGCGGATGAAGGTCGGCATCCAg                                                                                      <  1:314991/149‑1 (MQ=255)                                            gCCAGCGGCGCTCGC‑GGTGGCGGTCGGAGCTGGCCCCGATCATGAGCATGCCGGCCAGCGCGGCCAGGCTTGGAATGGCCGTGAGCAGGCCGATATGGAAGGTGTCGCTGACGCCCGCATCGCGGATGAAGGTCGGCATCCAGAAGcc                                                                                 >  7:98363/1‑148 (MQ=255)                                                         gc‑gGTGGCGGTCGGAGCTGGCCCCGATCATGAGCATGCCGGCCAGCGCGGCCAGGCTTGGAATGGCCGTGAGCAGGCCGATATGGAAGGTGTCGCTGACGCCCGCATCGCGGATGAAGGTCGGCATCCAGAAGCCCATc                                                                             <  3:46603/139‑1 (MQ=255)                                                         gc‑gGTGGCGGTCGGAGCTGGCCCCGATCATGAGCATGCCGGCCAGCGCGGCCAGGCTTGGAATGGCCGTGAGCAGGCCGATATGGAAGGTGTCGCTGACGCCCGCATCGCGGATGAAGGTCGGCATCCAGAAGCCCATc                                                                             >  4:46603/1‑139 (MQ=255)                                                         gc‑gGTGGCGGTCGGAGCCGGCCCCGATCATGAGCATGCCGGCCAGCGCGGCCAGGCTTGGAATGGCCGTGAGCAGGCCGATATGGAAGGTGTCGCTGACGCCCGCATCGCGGATGAAGGTCGGCATCCAGAAGCCCATCGCATAGgc                                                                     <  2:15282/147‑1 (MQ=255)                                                             gTGGCGGTCGGAGCTGGCCCCGATCATGAGCATGCCGGCCAGCGCGGCCAGGCTTGGAATGGCCGTGAGCAGGCCGATATGGAAGGTGTCGCTGACGCCCGCATCGCGGATGAAGGTCGGCATCCAGAAGCCCATCGCATAGGCGCTGa                                                                <  1:47554/149‑1 (MQ=255)                                                               ggCGGTCGGAGCTGGCCCCGATCATGAGCATGCCGGCCAGCGCGGCCAGGCTTGGAATGGCCGTGAGCAGGCCGATATGGAAGGTGTCGCTGACGCCCGCATCGCGGATGAAGGTCGGCATCCAGAAGCCCATCGCATAGGCGCTGAGc                                                              <  8:98363/149‑1 (MQ=255)                                                                gCGGTCGGAGCTGGCCCCGATCATGAGCATGCCGGCCAGCGCGGCCAGGCTTGGAATGGCCGTGAGCAGGCCGATATGGAAGGTGTCGCTGACGCCCGCATCGCGGATGAAGGTCGGCATCCAGAAGCCCATCGCATAGGCGCTGAg                                                               >  2:241151/1‑147 (MQ=255)                                                                gCGGTCGGAGCTGGCCCCGATCATGAGCATGCCGGCCAGCGCGGCCAGGCTTGGAATGGCCGTGAGCAGGCCGATATGGAAGGTGTCGCTGACGCCCGCATCGCGGATGAAGGTCGGCATCCAGAAGCCCATCGCATAGGCGCTGAg                                                               >  1:92332/1‑147 (MQ=255)                                                                   gTCGGAGCTGGCCCCGATCATGAGCATGCCGGCCAGCGCGGCCAGGCTTGGAATGGCCGTGAGCAGGCCGATATGGAAGGTGTCGCTGACGCCCGCATCGCGGATGAAGGTCGGCATCCAGAAGCCCATCGCATAGGCGCTGAGCAGGa                                                          >  1:165685/1‑149 (MQ=255)                                                                        aGCTGGCCCCGATCATGAGCATGCCGGCCAGCGCGGCCAGGCTTGGAATGGCCGTGAGCAGGCCGATATGGAAGGTGTCGCTGACGCCCGCATCGCGGATGAAGGTCGGCATCCAGAAGCCCATCGCATAGGCGCTGAGCAGGATCGaa                                                     <  3:219308/149‑1 (MQ=255)                                                                          cTGGCCCCGATCATGAGCATGCCGGCCAGCGCGGCCAGGCTTGGAATGGCCGTGAGCAGGCCGATATGGAAGGTGTCGCTGACGCCCGCATCGCGGATGAAGGTCGGCATCCAGAAGCCCATCGCATAGGCGCTGAGCAGGATCGaaaa                                                   <  3:253483/149‑1 (MQ=255)                                                                               cccGATCATGAGCATGCCGGCCAGCGCGGCCAGGCTTGGAATGGCCGTGAGCAGGCCGATATGGAAGGTGTCGCTGACGCCCGCATCGCGGATGAAGGTCGGCATCCAGAAGCCCATCGCATAGGCGCTGAGCAGGATCGAAAAGt                                                 <  5:153831/146‑1 (MQ=255)                                                                               cccGATCATGAGCATGCCGGCCAGCGCGGCCAGGCTTGGAATGGCCGTGAGCAGGCCGATATGGAAGGTGTCGCTGACGCCCGCATCGCGGATGAAGGTCGGCATCCAGAAGCCCATCGCATAGGCGCTGAGCAGGATCGAAAAGt                                                 >  6:153831/1‑146 (MQ=255)                                                                               cccGAGCATGAGCATGCCGGCCAGCGCGGCCAGGCTTGGAATGGCCGTGAGCAGGCCGATATGGAAGGTGTCGCTGACGCCCGCATCGCGGATGAAGGTCGGCATCCAGAAGCCCATCGCATAGGCGCTGAGCAGGATCGAAAAGTCGa                                              <  8:300557/149‑1 (MQ=255)                                                                                ccGATCATGAGCATGCCGGCCAGCGCGGCCAGGCTTGGAATGGCCGTGAGCAggccggcatgctcatgatcggggccagctccgaccgccaccgcgagcgccgctggcacatcatcgtgccgtttatcattggtgcaatcgccatggcc                                             >  8:132338‑M2/1‑52 (MQ=255)                                                                                ccGATCATGAGCATGCCGGCCAGCGCGGCCAGGCTTGGAATGGCCGTGAGCAggccggcatgctcatgatcggggccagctccgaccgccaccgcgagcgccgctggcacatcatcgtgccgtttatcattggtgcaatcgccatggc                                              <  7:132338‑M2/148‑97 (MQ=255)                                                                                     cATGAGCATGCCGGCCAGCGCGGCCAGGCTTGGAATGGCCGTGAGCAGGCCGATATGGAAGGTGTCGCTGACGCCCGCATCGCGGATGAAGGTCGGCATCCAGAAGCCCATCGCATAGGCGCTGAGCAGGATCGAAAAGTCGATaccac                                        >  7:237197/1‑149 (MQ=255)                                                                                        gAGCATGCCGGCCAGCGCGGCCAGGCTTGGAATGGCCGTGAGCAGGCCGATATGGAAGGTGTCGCTGACGCCCGCATCGCGGATGAAGGTCGGCATCCAGAAGCCCATCGCATAGGCGCt                                                                  >  5:193732/1‑120 (MQ=255)                                                                                        gAGCATGCCGGCCAGCGCGGCCAGGCTTGGAATGGCCGTGAGCAGGCCGATATGGAAGGTGTCGCTGACGCCCGCATCGCGGATGAAGGTCGGCATCCAGAAGCCCATCGCATAGGCGCt                                                                  <  6:193732/120‑1 (MQ=255)                                                                                            aTGCCGGCCAGCGCGGCCAGGCTTGGAATGGCCGTGAGCAGGCCGATATGGAAGGTGTCGCTGACGCCCGCATCGCGGATGAAGGTCGGCATCCAGAAGCCCATCGCATAGGCGCTGAGCAGGATCGAAAAGTCGATACCACCGAGCAt                                 <  2:165685/149‑1 (MQ=255)                                                                                             tGCCGGCCAGCGCGGCCAGGCTTGGAATGGCCGTGAGCAGGCCGATATGGAAGGTGTCGCTGACGCCCGCATCGCGGATGAAGGTCGGCATCCAGAAGCCCATCGCATAGGCGCTGAGCAGGATCGAAAAGTCGATACCACCGAGCATc                                <  2:92332/149‑1 (MQ=255)                                                                                               ccGGCCAGCGCGGCCAGGCTTGGAATGGCCGTGAGCAggccggcatgctcatgatcggggccagctccgaccgccaccgcgagcgccgctggcacatcatcgtgccgtttatcattggtgcaatcgccatggccagcagcaccttgtt                               <  5:220459‑M2/148‑112 (MQ=255)                                                                                                cGGCCAGCGCGGCCAGGCTTGGAATGGCCGTGAGCAGGCCGATATGGAAGGTGTCGCTGACGCCCGCATCGCGGATGAAGGTCGGCATCCAGAAGCCCATCGCATAGGCGCTGAGCAGGATCGAAAAGTCGATACCACCGAGCATCcac                             <  5:124778/149‑1 (MQ=255)                                                                                                       cgcgGCCAGGCTTGGAATGGCCGTGAGCAGGCCGATATGGAAGGTGTCGCTGACGCCCGCATCGCGGATGAAGGTCGGCATCCAGAATCCCATCGCATAGGCGCTGAGAAGGATCGAAAAGTCGATACCACCGAGCATCCACACCtt                        >  5:241185/1‑147 (MQ=255)                                                                                                                gCTTGGAATGGCCGTGAGCAGGCCGATATGGAAGGTGTCGCTGACGCCCGCATCGCGGATGAAGGTCGGCATCCAGAAGCCCATCGCATAGGCGCTGAGCAGGATCGAAAAGTCGATACCACCGAGCATCCACACCTTAAGGTTgaaga             <  1:241151/149‑1 (MQ=255)                                                                                                                gCTTGGAATGGCCGTGAGCAGGCCGATATGGAAGGTGTCGCTGACGCCCGCATCGCGGATGAAGGTCGGCATCCAGAAGCCCATCGCATAGGCGCTGAGCAGGATCGAAAAGTCGATACCACCGAGCATCAACAACTAAAGCTTgaag              >  4:169784/1‑148 (MQ=255)                                                                                                                  ttGGAATGGCCGTGAGCAGGCCGATATGGAAGGTGTCGCTGACGCCCGCATCGCGGATGAAGGTCGGCATCCAGAAGCCCATCGCATAGGCGCTGAGCAGGATCGAAAAGTCGATACCACCGAGCATCCACACCTTAAGGTTGaagaag           >  8:109129/1‑149 (MQ=255)                                                                                                                      aaTGGCCGTGAGCAGGCCGATATGGAAGGTGTCGCTGACGCCCTCATCGGGGATGAAGGTCGGCATCCAGAAGCCCATCGCATAGGCGCTGAGCAGGATCGAAAAGTCGATACCACCGAGCATCCACACCTTAAGGTTgaagaa            <  3:30528/144‑1 (MQ=255)                                                                                                                            cGTGAGCAGGCCGATATGGAAGGTGTCGCTGACGCCCGCATCGCGGATGAAGGTCGGCATCCAGAAGCCCATCGCATAGGCGCTGAGCAGGATCGAAAAGTCGATACCACCGAGCATCCACACCTTAAGGTTGAAGAAGCCATCGCgg  >  8:252070/1‑148 (MQ=255)                                                                                                                                   |                                                                                                                                             CTGGCCATGGCGATTGCACCAATGATAAACGGCACGATGATGTGCCAGCGGCGCTCGC‑GGTGGCGGTCGGAGCTGGCCCCGATCATGAGCATGCCGGCCAGCGCGGCCAGGCTTGGAATGGCCGTGAGCAGGCCGATATGGAAGGTGTCGCTGACGCCCGCATCGCGGATGAAGGTCGGCATCCAGAAGCCCATCGCATAGGCGCTGAGCAGGATCGAAAAGTCGATACCACCGAGCATCCACACCTTAAGGTTGAAGAAGCCATCGCGG  >  NC_002947/4442978‑4443247

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.