New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4548689 =	46 (0.880)	4 (0.080)	4/256	NT	6.9%	coding (1001/1440 nt)	pydB	bifunctional D‑hydantoinase/dihydropyrimidinase
	?	NC_002947	4548773 =	64 (1.280)					coding (1085/1440 nt)	pydB	bifunctional D‑hydantoinase/dihydropyrimidinase

GGTTATGTGATGAGCCCGCCGTTCCGCCCACGCGAACACCAGGAGGCGCTGTGGCGCGGCTTGCAGTCGGGCAACCTGCACACCACCGCCACCGACCACTGCTGCTTCTGCGCCGAGCAGAAAGCCATGGGCCGCGACGACTTCAGCC‑GCATCCCCAACGGCACCGCCGGCATCGAAGACCGCATGGCAGTACTGTGGGATGCCGGGGTCAACAGCGGGCGTTTGTCGATGCACGAATTCGTCGCGCTGACCTCTACCAACACGGCGAAAATCTTCAACCTGTTCCCGCG  >  NC_002947/4548541‑4548830                                                                                                                                                      |                                                                                                                                              ggTTATGTGATGAGCCCGCCGTTCCGCCCACGCGAACACCAGGAGGCGCTGTGGCGCGGCTTGCAGTCGGGCAACCTGCACACCACCGCCACCGACCACTGCTGCTTCTGCGCCGAGCAGAAAGCCATGGGCCGCGACGACTTCAGCC‑g                                                                                                                                               >  5:255518/1‑149 (MQ=255)  gTTATGTGATGAGCCCGCCGTTGCGCCGACGCGAACACCATGAGGCGCTGTGGCGCGGCTTGCAGGCGGGCAACCTGCACACCACCGCCAGCGACCACTGCTGCTTCTTCGCCGAGCAGAAAGGCATGGGCCGCGACGACTTCAGCC‑Gc                                                                                                                                              <  8:194503/149‑1 (MQ=255)    gtggtgggttttggcggagatggtgcgggtgccctgcgggtcccacagcaccaggtcggcatcggcacccacgcggatagcgcccttgcgcgggaacaggttgaagattttcgccgtgttggtagaggtcagcgcgacgaattcgtGc                                                                                                                                              >  3:34256‑M1/147‑148 (MQ=255)     tggtgggttttggcggagatggtgcgggtgccctgcgggtcccacagcaccaggtcggcatcggcacccacgcggatagcgcccttgcgcgggaacaggttgaagattttcgccgtgttggtagaggtcagcgcgacgaattcgtGCAt                                                                                                                                            >  2:146424‑M1/146‑149 (MQ=255)     aTGTGATGAGCCCGCCGTTCCGCCCACGCGAACACCAGGAGGCGCTGTGGCGCGGCTTGCAGTCGGGCAACCTGCACACCACCGCCACCGACCACTGCTGCTTCTGCGCCGAGCAGAAAGCCATGGGCCGCGACGACTTCAGCC‑GCATc                                                                                                                                           >  7:218596/1‑149 (MQ=255)        tgatgaGCCCGCCGTTCCGCCCACGCGAACACCAGGAGGCGCTGTGGCGCGGCTTGCAGTCGGGCAACCTGCACACCACCGCCACCGACCACTGCTGCTTCTGCGCCGAGCAGAAAGCCATGGGCCGCGACGACTTCAGCC‑GCATccc                                                                                                                                         <  8:32350/148‑1 (MQ=255)          atgaGCCCGCCGTTCCGCCCACGCGAACACCAGGAGGCGCTGTGGCGCGGCTTGCAGTCGGGCAACCTGCACACCACCGCCACCGACCACTGCTGCTTCTGCGCCGAGCAGAAAGCCATGGGCCGCGACGACTTCAGCC‑GCATCCCCaa                                                                                                                                      <  8:160126/149‑1 (MQ=255)             aGCCCGCCGTTCCGCCCACGCGAACACCAGGAGGCGCTGTGGCGCGGCTTGCAGTCGGGCAACCTGCACACCACCGCCACCGACCACTGCTGCTTCTGCGCCGAGCAGAAAGCCATGGGCCGCGACGACTTCAGCC‑GCATCCCCAACgg                                                                                                                                   <  8:218596/149‑1 (MQ=255)                  gccgTTCCGCCCACGCGAACACCAGGAGGCGCTGTGGCGCGGCTTGCAGTCGGGCAACCTGCACACCACCGCCACCGACCACTGCTGCTTCTGCGCCGAGCAGAAAGCCATGGGCCGCGACGACTTCAGCC‑GCATcc                                                                                                                                          >  4:214303/1‑137 (MQ=255)                  gccgTTCCGCCCACGCGAACACCAGGAGGCGCTGTGGCGCGGCTTGCAGTCGGGCAACCTGCACACCACCGCCACCGACCACTGCTGCTTCTGCGCCGAGCAGAAAGCCATGGGCCGCGACGACTTCAGCC‑GCATcc                                                                                                                                          <  3:214303/137‑1 (MQ=255)                          gCCCACGCGAACACCAGGAGGCGCTGTGGCGCGGCTTGCAGTCGGGCAACCTGCACACCACCGCCACCGACCACTGCTGCTTCTGCGCCGAGCAGAAAGCCATGGGCCGCGACGACTTCAGCC‑GCATCCCCAACGGCACCGCCGGCATc                                                                                                                      >  2:235927/1‑149 (MQ=255)                             cACGCGAACACCAGGAGGCGCTGTGGCGCGGCTTGCAGTCGGGCAACCTGCACACCACCGCCACCGACCACTGCTGCTTCTGCGCCGAGCAGAAAGCCATGGGCCGCGACGACTTCAGCC‑GCATCCCCAACGGCACCGCCGGCATCGaa                                                                                                                   <  8:151553/149‑1 (MQ=255)                                  gAACACCAGGAGGCGCTGTGGCGCGGCTTGCAGTCGGGCAACCTGCACACCACCGCCACCGACCACTGCTGCTTCTGCGCCGAGCAGAAAGCCATGGGCCGCGACGACTTCAGCC‑GCATCCCCAACGGCACCGCCGGCATCGAAGACCg                                                                                                              <  3:19477/149‑1 (MQ=255)                                        cAGGAGGCGCTGTGGCGCGGCTTGCAGTCGGGCAACCTGCACACCACCGCCACCGACCACTGCTGCTTCTGCGCCGAGCAGAAAGCCATGGGCCGCGACGACTTCAGCC‑GCATCCCCAACGGCACCGCCGGCATCGAAGACCGCATgg                                                                                                         >  2:24946/1‑148 (MQ=255)                                        cAGGAGGCGCTGTGGCGCGGCTTGCAGTCGGGCAACCTGCACACCACCGCCACCGACCACTGCTGCTTCTGCGCCGAGCAGAAAGCCATGGGCCGCGACGACTTCAGCC‑GCATCCCCAACGGCACCGCCGGCATCGAAGACCGCATgg                                                                                                         >  3:140315/1‑148 (MQ=255)                                        cAGGAGGCGCTGTGGCGCGGCTTGCAGTCGGGCAACCTGCACACCACCGCCACCGACCACTGCTGCTTCTGCGCCGAGCAGAAAGCCATGGGCCGCGACGACTTCAGCC‑GCATCCCCAACGGCACCGCCGGCATCGAAGACCGCATGGc                                                                                                        <  7:284937/149‑1 (MQ=255)                                                acagcaccaggtcggcatcggcacccacgcggatagcgcccttgcgcgggaacaggttgaagattttcgccgtgttggtagaggtcagcgcgacgaattagtGCATCCCCAACGGCACCGCCGGCATCGAAGACCGCATGGCAGTACtg                                                                                                 <  3:190850‑M1/47‑1 (MQ=255)                                                 cTGTGGCGCGGCTTGCAGTCGGGCAACCTGCACACCACCGCCACCGACCACTGCTGCTTCTGCGCCGAGCAGAAAGCCATGGGCCGCGACGACTTCAGCC‑GCATCCCCAACGGCACCGCCGGCATCGAAGACCGCATGGCAGTACtgtg                                                                                               <  4:140315/149‑1 (MQ=255)                                                        gcgGCTTGCAGTCGGGCAACCTGCACACCACCGCCACCGACCACTGCTGCTTCTGCGCCGAGCAGAAAGCCATGGGCCGCGACGACTTCAGCC‑GCATCCCCAACGGCACCGCCGGCATCGAAGACCGCATGGCAGTACTGTGGGATGcc                                                                                        >  5:181966/1‑149 (MQ=255)                                                        gcgGCTTGCAGTCGGGCAACCTGCACACCACCGCCAACGACCACTGCTGCTTCTGCGACGAGCAGAAAGCCATGGGCCGCGACCACTTCAGCC‑GCAACCCCAACGGCACCGCAGGCATCGAACACCGCATGGCAGTACTCTGCGATGcc                                                                                        >  8:63992/1‑149 (MQ=255)                                                               gCAGTCGGGCAACCTGCACACCACCGCCACCGACCACTGCTGCTTCTGCGCCGAGCAGAAAGCCATGGGCCGCGACGACTTCAGCC‑GCATCCCCAACGGCACCGCCGGCATCGAAGACCGCATGGCAGTACTGTGGGATGCCgggg                                                                                    <  8:252470/146‑1 (MQ=255)                                                               gCAGTCGGGCAACCTGCACACCACCGCCACCGACCACTGCTGCTTCTGCGCCGAGCAGAAAGCCATGGGCCGCGACGACTTCAGCC‑GCATCCCCAACGGCACCGCCGGCATCGAAGACCGCATGGCAGTACTGTGGGATGCCgggg                                                                                    >  7:252470/1‑146 (MQ=255)                                                                         cacgcggatagcgcccttgcgcgggaacaggttgaagattttcgccgtgttggtagaggtcagcgcgacgaattcgtGCATCCCCAACGGCACCGCCGGCATCGAAGACCGCATGGCAGTACTGTGGGATGCCGGGGTCAACAGCGGGc                                                                        <  3:254532‑M1/72‑1 (MQ=255)                                                                              gCACACCACCGCCACCGACCACTGCTGCTTCTGCGCCGAGCAGAAAGCCATGGGCCGCGACGACTTCAGCC‑GCATCCCCAACGGCACCGCCGGCATCGAAGACCGCATGGCAGTACTGTGGGATGCCGGGGTCAACAGCGGGCGTTTGt                                                                  >  8:57243/1‑149 (MQ=255)                                                                               cacaCCACCGCCACCGACCACTGCTGCTTCTGCGCCGAGCAGAAAGCCATGGGCCGCGACGACTTCAGCC‑GCATCCCCAACGGCACCGCCGGCATCGAAGACCGCATGGCAGTACTGTGGGATGCCGGGGTCAACAGCGGGCGTTTGt                                                                  <  1:24946/148‑1 (MQ=255)                                                                                  accaccGCCACCGACCACTGCTGCTTCTGCGCCGAGCAGAAAGCCATGGGCCGCGACGACTTCAGCC‑GCATCCCCAACGGCACCGCCGGCATCGAAGACCGCATGGCAGTACTGTGGGATGCCGGGGTCAACAGCGGGCGTTTGTCGAt                                                              >  7:91821/1‑149 (MQ=255)                                                                                       ccttgcgcgggaacaggttgaagattttcgccgtgttggtagaggtcagcgcgacgaattcgtGCATCCCCAACGGCACCGCCGGCATCGAAGACCGCATGGCAGTACTGTGGGATGCCGGGGTCAACAGCGGGCGTTTGTCGATGCAc                                                          >  4:254532‑M1/64‑149 (MQ=255)                                                                                                  aCTGCTGCTTCTGCGCCGAGCAGAAAGCCATGGGCCGCGACGACTTCAGCC‑GCATCCCCAACGGCACCGCCGGCATCGAAGACCGCATGGCAGTACTGTGGGATGCCGGGGTCAACAGCGGGCGTTTGTCGATGCACGAATTCGTcgcg                                              >  4:23327/1‑149 (MQ=255)                                                                                                   acaggttgaagattttcgccgtgttggtagaggtcagcgcgacgaattcgtGCATCCCCAACGGCACCGCCGGCATCGAAGACCGCATGGCAGTACTGTGGGATGCCGGGGTCAACAGCGGGCGTTTGTCGATGCACGAATTCGTcgcg                                              >  4:190850‑M1/52‑149 (MQ=255)                                                                                                    tgctgcTTCTGCGCCGAGCAGAAAGCCATGGGCCGCGACGACTTCAGCC‑GCATCCCCAACGGCACCGCCGGCATCGAAGACCGCATGGCAGTACTGTGGGATGCCGGGGTCAACAGCGGGCGTTTGTCGATGCACGAAt                                                      <  4:196225/139‑1 (MQ=255)                                                                                                    tgctgcTTCTGCGCCGAGCAGAAAGCCATGGGCCGCGACGACTTCAGCC‑GCATCCCCAACGGCACCGCCGGCATCGAAGACCGCATGGCAGTACTGTGGGATGCCGGGGTCAACAGCGGGCGTTTGTCGATGCACGAAt                                                      >  3:196225/1‑139 (MQ=255)                                                                                                          ttCTGCGCCGAGCAGAAAGCCATGGGCCGCGACGACTTCAGCC‑GCATCCCCAACGGCACCGCCGGCATCGAAGACCGCATGGCAGTACTGTGGGATGCCGGGGTCAACAGCGGGCGTTTGTCGATGCACGAATTCGTCGCGCTGACctc                                      >  6:326904/1‑149 (MQ=255)                                                                                                            cTGCGCCGAGCAGAAAGCCATGGGCCGCGACGACTTCAGCCGGCATCCCCAACGGCACCGCCGGCATCGAAGACCGCATGGCAGTACTGTGGGATGCCGGGGTCAACAGCGGGCGTTTGTCGATGCACGAATTCGTCGCGCTGCCctc                                      >  1:226482/1‑148 (MQ=255)                                                                                                               cgcCGAGCAGAAAGCCATGGGCCGCGACGACTTCAGCC‑GCATCCCCAACGGCACCGCCGGCATCGAAGACCGCATGGCAGTACTGTGGGATGCCGGGGTCAACAGCGGGCGTTTGTCGATGCACGAATTCGTCGCGCTGACCTCTAc                                   <  3:23327/147‑1 (MQ=255)                                                                                                                       aGAAAGCCATGGGCCGCGACGACTTCAGCC‑GCATCCCCAACGGCACCGCCGGCATCGAAGACCGCATGGCAGTACTGTGGGATGCCGGGGTCAACAGCGGGCGTTTGTCGATGCACGAATTCGTCGCGCTGACCTCTACCAACACGGc                          >  4:165038/1‑148 (MQ=255)                                                                                                                          aaGCCATGGGCCGCGACGACTTCAGCC‑GCATCCCCAACGGCACCGCCGGCATCGAAGACCGCATGGCAGTACTGTGGGATGCCGGGGTCAACAGCGGGCGTTTGTCGATGCACGAATTCGTCGCGCTGACCTCTACCAACACGGCGaa                       >  2:33096/1‑148 (MQ=255)                                                                                                                           aGCCATGGGCCGCGACGACTTCAGCC‑GCATCCCCAACGGCACCGCCGGCATCGAAGACCGCATGGCAGTACTGTGGGATGCCGGGGTCAACAGCGGGCGTTTGTCGATGCACGAATTCGTCGCGCTGACCTCTACCAACACGGCGaaaa                     >  3:272421/1‑149 (MQ=255)                                                                                                                             ccATGGGCCGCGACGACTTCAGCC‑GCATCCCCAACGGCACCGCCGGCATCGAAGACCGCATGGCAGTACTGTGGGATGCCGGGGTCAACAGCGGGCGTTTGTCGATGCACGAATTCGTCGCGCTGACCTCTACCAACACGGCGAAAATc                   >  4:72588/1‑149 (MQ=255)                                                                                                                             ccATGGGCCGCGACGACTTCAGCC‑GCATCCCCAACGGCACCGCCGGCATCGAAGACCGCATGGCAGTACTGTGGGATGCCGGGGTCAACAGCGGGCGTTTGTCGATGCACGAATTCGTCGCGCTGACCTCTACCAACACGGCGAAAATc                   >  3:167616/1‑149 (MQ=255)                                                                                                                                tGGGCCGCGACGACTTCAGCC‑GCATCCCCAACGGCACCGCCGGCATCGAAGACCGCATGGCAGTACTGTGGGATGCCGGGGTCAACAGCGGGCGTTTGTCGATGCACGAATTCGTCGCGCTGACCTCTACCAACACGGCGAAAATCTTc                <  2:226482/149‑1 (MQ=255)                                                                                                                                   gCCGCGACGACTTCAGCC‑GCATCCCCAACGGCACCGCCGGCATCGAAGACCGCATGGCAGTACTGTGGGATGCCGGGGTCAACAGCGGGCGTTTGTCGATGCACGAATTCGTCGCGCTGACCTCTAc                                   >  5:102271/1‑127 (MQ=255)                                                                                                                                   gCCGCGACGACTTCAGCC‑GCATCCCCAACGGCACCGCCGGCATCGAAGACCGCATGGCAGTACTGTGGGATGCCGGGGTCAACAGCGGGCGTTTGTCGATGCACGAATTCGTCGCGCTGACCTCTAc                                   <  6:102271/127‑1 (MQ=255)                                                                                                                                   gCCGCGACGACTTCAGCC‑GCATCCCCAACGGCACCGCCGGCATCGAAGACCGCATGGCAGTACTGTGGGATGCCGGGGTCAACAGCGGGCGTTTGTCGATGCACGAATTCGTCGCGCTGACCTCTACCAACACGGCGAAAATCTTCAAc             <  8:91821/149‑1 (MQ=255)                                                                                                                                   gCCGCGACGACTTCAGCC‑GCATCCCCAACGGCACCGCCGGCATCGAAGACCGCATGGCAGTACTGTGGGATGCCGGGGTCAACAGCGGGCGTTTGTCGATGCACGAATTCGTCGCGCTGACCTCTACCAACACGGCGAAAATCTTCAAc             <  1:37495/149‑1 (MQ=255)                                                                                                                                     cgcgACGACTTCAGCC‑GCATCCCCAACGGCACCGCCGGCATCGAAGACCGCATGGCAGTACTGTGGGATGCCGGGGTCAACAGCGGGCGTTTGTCGATGCACGAATTCGTCGCGCTGACCTCTACCAACACGGCGAAAATCTTCAACCt           <  4:272421/149‑1 (MQ=255)                                                                                                                                      gcgACGACTTCAGCC‑GCATCCCCAACGGCACCGCCGGCATCGAAGACCGCATGGCAGTACTGTGGGATGCCGGGGTCAACAGCGGGCGTTTGTCGATGCACGAATTCGTCGCGCTGACCTCTACCAACACGGCGAAAATCTTCAACCTg          >  2:270296/1‑149 (MQ=255)                                                                                                                                       cgacgaCTTCAGCC‑GCATCCCCAACGGCACCGCCGGCATCGAAGACCGCATGGCAGTACTGTGGGATGCCGGGGTCAACAGCGGGCGTTTGTCGATGCACGAATTCGTCGCGCTGACCTCTACCAACACGGCGAAAATCTTCAACCTGt         >  8:112272/1‑149 (MQ=255)                                                                                                                                        gacgacTTCAGCC‑GCATCCCCAACGGCACCGCCGGCATCGAAGACCGCATGGCAGTACTGTGGGATGCCGGGGTCAACAGCGGGCGTTTGTCGATGCACGAATTCGTCGCGCTGACCTCTACCAACACGGCGAAAATCTTCAACCTGtt        >  7:306223/1‑149 (MQ=255)                                                                                                                                        gacgacTTCAGCC‑GCATCCCCAACGGCACCGCCGGCATCGAAGACCGCATGGCAGTACTGTGGGATGCCGGGGTCAACAGCGGGCGTTTGTCGATGCACGAATTCGTCGCGCTGACCTCTACCAACACGGCGAAAATCTTCAACCTGtt        <  7:57243/149‑1 (MQ=255)                                                                                                                                         acgacTTCAGCC‑GCATCCCCAACGGCACCGCCGGCATCGAAGACCGCATGGCAGTACTGTGGGATGCCGGGGTCAACAGCGGGCGTTTGTCGATGCACGAATTCGTCGCGCTGACCTCTACCAACACGGCGAAAATCTTCAACCTGTTc       <  4:142346/149‑1 (MQ=255)                                                                                                                                              ttCAGCC‑GCATCCCCAACGGCACCGCCGGCATCGAAGACCGCATGGCAGTACTGTGGGATGCCGGGGTCAACAGCGGGCGTTTGTCGATGCACGAATTCGTCGCGCTGACCTCTACCAACACGGCGAAAATCTTCAACCTGTTCCcgcg  >  5:196686/1‑149 (MQ=255)                                                                                                                                              ttCAGCC‑GCATCCCCAACGGCACCGCCGGCATCGAAGACCGCATGGCAGTACTGTGGGATGCCGGGGTCAACAGCGGGCGTTTGTCGATGCACGAATTCGTCGCGCTGACCTCTACCAACACGGCGAAAATCTTCAACCTGTTCCcgcg  >  4:206425/1‑149 (MQ=255)                                                                                                                                              ttCAGCC‑GCATCCCCAACGGCACCGCCGGCATCGAAGACCGCATGGCAGTACTGTGGGATGCCGGGGTCAACAGCGGGCGTTTGTCGATGCACGAATTCGTCGCGCTGACCTCTACCAACACGGCGAAAATCTTCAACCTGTTCCcgcg  >  3:257570/1‑149 (MQ=255)                                                                                                                                               tCAGCC‑GCATCCCCAACGGCACCGCCGGCATCGAAGACCGCATGGCAGTACTGTGGGATGCCGGGGTCAACAGCGGGCGTTTGTCGATGCACGAATTCGTCGCGCTGACCTCTACCAACACGGCGa                        >  4:209209/1‑126 (MQ=255)                                                                                                                                               tCAGCC‑GCATCCCCAACGGCACCGCCGGCATCGAAGACCGCATGGCAGTACTGTGGGATGCCGGGGTCAACAGCGGGCGTTTGTCGATGCACGAATTCGTCGCGCTGACCTCTACCAACACGGCGa                        <  3:209209/126‑1 (MQ=255)                                                                                                                                                cAGCC‑GCATCCCCAACGGCACCGCCGGCATCGAAGACCGCATGGCAGTACTGTGGGATGCCGGGGTCAACAGCGGGCGTTTGTCGATGCACGAATTCGTCGCGCTGACCTCTACCAACACGGCGAAAATCTTCAACCTGTTCCcgcg  <  3:206425/147‑1 (MQ=255)                                                                                                                                                      |                                                                                                                                              GGTTATGTGATGAGCCCGCCGTTCCGCCCACGCGAACACCAGGAGGCGCTGTGGCGCGGCTTGCAGTCGGGCAACCTGCACACCACCGCCACCGACCACTGCTGCTTCTGCGCCGAGCAGAAAGCCATGGGCCGCGACGACTTCAGCC‑GCATCCCCAACGGCACCGCCGGCATCGAAGACCGCATGGCAGTACTGTGGGATGCCGGGGTCAACAGCGGGCGTTTGTCGATGCACGAATTCGTCGCGCTGACCTCTACCAACACGGCGAAAATCTTCAACCTGTTCCCGCG  >  NC_002947/4548541‑4548830

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.