New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4674602 =	40 (0.770)	5 (0.100)	3/254	NT	10.2%	coding (1374/2073 nt)	PP_4137	outer membrane siderophore receptor
	?	NC_002947	4674651 =	50 (1.010)					coding (1423/2073 nt)	PP_4137	outer membrane siderophore receptor

TACACGCGCCGCGAAAGTGACGTGACCTACCCCTCTGAAGGCGGCAAGGTGAGCATGCATGACTGGGACTATGCCCCCCGCCTGGGGCTGCGCTACGACATCCGCCCGGACTTGCAGGTGTACGGCAACCTGAGCCGCTCGGTAGAGCCGCCACACCCGTGGTCGCTGATCTGGAGCGCGCCCAGCACAGGCGGCAAGCAGATCCAGCCGATCGAGATGCAGAACCAGACAGCCACCACCCTGGAACTGGGCGCCCGTGGCGACTCGGCGCTCGGCCGCTGGGACCTGGCCTGG  >  NC_002947/4674456‑4674749                                                                                                                                                   |                                                                                                                                                    ggcactacctcaacggctagcagttcgtggcgtacttgcgagtagtaccaggccaggtcccagcggccgagcgccgagtcgccacgggcgcccagttccagggtggtggctgtctggttctgcatctcgatcggctggatctgcttgc                                                                                                                                                    >  2:173093‑M1/147‑148 (MQ=255)                         acCTACCCCTCTGAAGGCGGCAAGGTGAGCATGCATGACTGGGACTATGCCCCCCGCCTGGGGCTGCGCTACGACATCCGCCCGGACTTGCAGGTGTACGGCAACCTGAGCCGCTCGGTAGAGCCGCCACACCCGTGGTCGCTGATCTg                                                                                                                           <  7:250655/149‑1 (MQ=255)                           cTACCCCTCTGAAGGCGGCAAGGTGAGCATGCATGACTGGGACTATGCCCCCCGCCTGGGGCTGCGCTACGACATCCGCCCGGACTTGCAGGTGTACGGCAACCTGAGCCGCTCGGTAGAGCCGCCACACCCGTGGTCGCTGATCTg                                                                                                                           >  1:290859/1‑147 (MQ=255)                           cTACCCCTCTGAAGGCGGCAAGGTGAGCATGCATGACTGGGACTATGCCCCCCGCCTGGGGCTGCGCTACGACATCCGCCCGGACTTGCAGGTGTACGGCAACCTGAGCCGCTCGGTAGAGCCGCCACACCCGTGGTCGCTGATCTGGa                                                                                                                         <  3:300064/149‑1 (MQ=255)                                ccTCTGAAGGCGGCAAGGTGAGCATGCATGACTGGGACTATGCCCCCCGCCTGGGGCTGCGCTACGACATCCGCCCGGACTTGCAGGTGTACGGCAACCTGAGCCGCTCGGTAGAGCCGCCACACCCGTGGTCGCTGATCTGGAgcgcg                                                                                                                    >  1:175942/1‑149 (MQ=255)                                      aaGGCGGCAAGGTGAGCATGCATGACTGGGACTATGCCCCCCGCCTGGGGCTGCGCTACGACATCCGCCCGGACTTGCAGGTGTACGGCAACCTGAGCCGCTCGGTAGAGCCGCCACACCCGTGGTCGCTGATCTGGAGCGCGCCCAg                                                                                                               >  6:197095/1‑148 (MQ=255)                                      aaGGCGGCAAGGTGAGCATGCATGACTGGGACTATGCCCCCCGCCTGGGGCTGCGCTACGACATCCGCCCGGACTTGCAGGTGTACGGCAACCTGAGCCGCTCGGTAGAGCCGCCACACCCGTGGTCGCTGATCTGGAGCGCGCCCAGc                                                                                                              >  4:19124/1‑149 (MQ=255)                                            gcAAGGTGAGCATGCATGACTGGGACTATGCCCCCCGCCTGGGGCTGCGCTACGACATCCGCCCGGACTTGCAGGTGTACGGCAACCTGAGCCGCTCGGTAGAGCCGCCACACCCGTGGTCGCTGATCTGGAGCGCGCCCAGCACAggc                                                                                                        <  4:56926/149‑1 (MQ=255)                                             gtaccaggccaggtcccagcggccgagcgccgagtcgccacgggcgcccagttccagggtggtggctgtctggttctgcatctcgatcggctggatctgcttGCCGCCACACCCGTGGTCGCTGATCTGGAGCGCGCCCAGCACAggcg                                                                                                       <  7:299296‑M1/47‑1 (MQ=255)                                             gtaccaggccaggtcccagcggccgagcgccgagtcgccacgggcgcccagttccagggtggtggctgtctggttctgcatctcgatcggctggatctgcttGCCGCCACACCCGTGGTCGCTGATCTGGAGCGCGCCCAGCACAggcg                                                                                                       <  7:303530‑M1/47‑1 (MQ=255)                                                   ggccaggtcccagcggccgagcgccgagtcgccacgggcgcccagttccagggtggtggctgtctggttctgcatctcgatcggctggatctgcttGCCGCCACACCCGTGGTCGCTGATCTGGAGCGCGCCCAGCACAGGCGGCAAGc                                                                                                 >  8:303530‑M1/97‑149 (MQ=255)                                                   ggccaggtcccagcggccgagcgccgagtcgccacgggcgcccagttccagggtggtggctgtctggttctgcatctcgatcggctggatctgcttGCCGCCACACCCGTGGTCGCTGATCTGGAGCGCGCCCAGCACAGGCGGCAAGc                                                                                                 >  8:299296‑M1/97‑149 (MQ=255)                                                    aGCATGCATGACTGGGACTATGCCCCCCGCCTGGGGCTGCGCTACGACATCCGCCCGGACTTGCAGGTGTACGGCAACCTGAGCCGCTCGGTAGAGCCGCCACACCCGTGGTCGCTGATCTGGAGCGCGCCCAGCACAGGCGGCAAg                                                                                                  >  1:175734/1‑147 (MQ=255)                                                    aGCATGCATGACTGGGACTATGCCCCCCGCCTGGGGCTGCGCTACGACATCCGCCCGGACTTGCAGGTGTACGGCAACCTGAGCCGCTCGGTAGAGCCGCCACACCCGTGGTCGCTGATCTGGAGCGCGCCCAGCACAGGCGGCAAGc                                                                                                 <  2:175942/148‑1 (MQ=255)                                                      catgcatgACTGGGACTATGCCCCCCGCCTGGGGCTGCGCTACGACATCCGCCCGGACTTGCAGGTGTACGGCAACCTGAGCCGCTCGGTAGAGCCGCCACACCCGTGGTCGCTGATCTGGAGCGCGCCCAGCACAGGCGGCAAGCAGa                                                                                              <  2:290859/149‑1 (MQ=255)                                                         gcatgACTGGGACTATGCCCCCCGCCTGGGGCTGCGCTACGACATCCGCCCGGACTTGCAGGTGTACGGCAACCTGAGCCGCTCGGTAGAGCCGCCACACCCGTGGTCGCTGATCTGGAGCGCGCCCAGCACAGGCGGCAAGCAGATcc                                                                                           >  8:279978/1‑149 (MQ=255)                                                         gcatgACTGGGACTATGCCCCCCGCCTGGGGCTGCGCTACGACATCCGCCCGGACTTGCAGGTGTACGGCAACCTGAGCCGCTCGGTAGAGCCGCCACACCCGTGGTCGCTGATCTGGAGCGCGCCCAGCACAGGCGGCAAGCAGATc                                                                                            >  2:311471/1‑148 (MQ=255)                                                             gACTGGGACTATGCTCCCCGCCTGGGGCTGCGCTACGACATCCGCCCGGACTTGCAGGTGTACGGCAACCTGAGCCGCTCGGTAGAGCCGCCAAACCCGTGGTCGCTGATCTGGAGCGCGCCCAGCACAGGCGGCAAGCAGATCCAGcc                                                                                       >  7:78297/1‑149 (MQ=255)                                                               cTGGGACTATGCCCCCCGCCTGGGGCTGCGCTACGACATCCGCCCGGACTTGCAGGTGTACGGCAACCTGAGCCGCTCGGTAGAGCCGCCACACCCGTGGTCGCTGATCTGGAGCGCGCCCAGCACAGGCGGCAAGCAGATCCAGCCGa                                                                                     >  6:319837/1‑149 (MQ=255)                                                                     cTATGCCCCCCGCCTGGGGCTGCGCTACGACATCCGCCCGGACTTGCAGGTGTACGGCAACCTGAGCCGCTCGGTAGAGCCGCCACACCCGTGGTCGCTGATCTGGAGCGCGCCCAGCACAGGCGGCAAGCAGATCCAGCCGATc                                                                                   >  4:21860/1‑145 (MQ=255)                                                                           cccccGCCTGGGGCTGCGCTACGACATCCGCCCGGACTTGCAGGTGTACGGCAACCTGAGCCGCTCGGTAGAGCCGCCACACCCGTGGTCGCTGATCTGGAGCGCGCCCAGCACAGGCGGCAAGCAGATCCAGCCGATCGAGATGCAg                                                                          >  5:307531/1‑148 (MQ=255)                                                                                   cacgggcgcccagttccagggtggtggctgtctggttctggatctcgatcggctggatctgcttGCCGCCACACCCGTGGTCGCTGATCTGGAGCGCGCCCAGCACAGGCGGCAAg                                                                                                  <  2:26489‑M1/52‑1 (MQ=255)                                                                                             cTACGACATCCGCCCGGACTTGCAGGTGTACGGCAACCTGAGCCGCTCGGTAGAGCCGCCACACCCGTGGTCGCTGATCTGGAGCGCGCCCAGCACAGGCGGCAAGCAGATCCAGCCGATCGAGATGCAGAACCAGACAGCCACCAccc                                                       >  3:60953/1‑149 (MQ=255)                                                                                              tACGACATCCGCCCGGACTTGCAGGTGTACGGCAACCTGAGCCGCTCGGTAGAGCCGCCACACCCGTGGTCGCTGATCTGGAGCGCGCCCAGCACAGGCGGCAAGCAGATCCAGCCGATCGAGATGCAGAACCAGACAGCCACCACCCt                                                      >  1:28170/1‑149 (MQ=255)                                                                                                cGACATCCGCCCGGACTTGCAGGTGTACGGCAACCTGAGCCGCTCGGTAGAGCCGCCACACCCGTGGTCGCTGATCTGGAGCGCGCCCAGCACAGGCGGCAAGCAGATCCAGCCGATCGAGATGCAGAACCAGACAGCCACCACCCTgg                                                    <  3:315069/149‑1 (MQ=255)                                                                                                cGACATCCGCCCGGACTTGCAGGTGTACGGCAACCTGAGCCGCTCGGTAGAGCCGCCACACCCGTGGTCGCTGATCTGGAGCGCGCCCAGCACAGGCGGCAAGCAGATCCAGCCGATCGAGATGCAGAACCAGACAGCCACCACCCTgg                                                    <  2:143773/149‑1 (MQ=255)                                                                                                    aTCCGCCCGGACTTGCAGGTGTACGGCAACCTGAGCCGCTCGGTAGAGCCGCCACACCCGTGGTCGCTGATCTGGAGCGCGCCCAGCACAGGCGGCAAGCAGATCCAGCCGATCGAGATGCAGAACCAGACAGCCACCACCCTGGAACt                                                >  4:226207/1‑149 (MQ=255)                                                                                                       cGCCCGGACTTGCAGGTGTACGGCAACCTGAGCCGCTCGGTAGAGCCGCCACACCCGTGGTCGCTGATCTGGAGCGCGCCCAGCACAGGCGGCAAGCAGATCCAGCCGATCGAGATGCAGAACCAGACAGCCACCACCCTGGAACTggg                                             <  1:311471/149‑1 (MQ=255)                                                                                                       cGCCCGGACTTGCAGGTGTACGGCAACCTGAGCCGCTCGGTAGAGCCGCCACACCCGTGGTCGCTGATCTGGAGCGCGCCCAGCACAGGCGGCAAGCAGATCCAGCCGATCGAGATGCAGAACCAGACAGCCACCACCCTGGAACTgg                                              <  8:78297/148‑1 (MQ=255)                                                                                                        gCCCGGACTTGCAGGTGTACGGCAACCTGAGCCGCTCGGTAGAGCCGCCACACCCGTGGTCGCTGATCTGGAGCGCGCCCAGCACAGGCGGCAAGCAGATCCAGCCGATCGAGATGCAGAACCAGACAGCCACCACCCTGGAACTGGgc                                            <  3:19124/149‑1 (MQ=255)                                                                                                         cccGGACTTGCAGGTGTACGGCAACCTGAGCCGCTCGGTAGAGCCGCCACACCCGTGGTCGCTGATCTGGAGCGCGCCCAGCACAGGCGGCAAGCAGATCCAGCCGATCGAGATGCAGAACCAGACAGCCACCACCCTGGAACTGGgcg                                           >  8:302729/1‑149 (MQ=255)                                                                                                         cccGGACTTGCAGGTGTACGGCAACCTGAGCCGCTCGGTAGAGCCGCCACACCCGTGGTCGCTGATCTGGAGCGCGCCCAGCACAGGCGGCAAGCAGATCCAGCCGATCGAGATGCAGAACCAGACAGCCACCACCCTGGAACTGGgcg                                           >  4:188033/1‑149 (MQ=255)                                                                                                            ggACTTGCAGGTGTACGGCAACCTGAGCCGCTCGGTAGAGCCGCCACACCCGTGGTCGCTGATCTGGAGCGCGCCCAGCACAGGCGGCAAGCAGATCCAGCCGATCGAGATGCAGAACCAGACAGCCACCACCCTGGAACTGGGCGccc                                        >  1:107390/1‑149 (MQ=255)                                                                                                                    aGGTGTACGGCAACCTGAGCCGCTCGGTAGAGCCGCCACACCCGTGGTCGCTGATCTGGAGCGCGCCCAGCACAGGCGGCAAGCAGATCCAGCCGATCGAGATGCAGAACCAGACAGCCACCACCCTGGAACTGGGCGCCCGTGGCGAc                                >  2:86274/1‑149 (MQ=255)                                                                                                                       tgtACGGCAACCTGAGCCGCTCGGTAGAGCCGCCACACCCGTGGTCGCTGATCTGGAGCGCGCCCAGCACAGGCGGCAAGCAGATCCAGCCGATCGAGATGCAGAACCAGACAGCCACCACCCTGGAACTGGGCGCCCGTGGCGACTCg                             <  2:107390/149‑1 (MQ=255)                                                                                                                           cGGCAACCTGAGCCGCTCGGTAGAGCCGCCACACCCGTGGTCGCTGATCTGGAGCGCGCCCAGCACAGGCGGCAAGCAGATCCAGCCGATCGAGATGCAGAACCAGACAGCCACCACCCTGGAACTGGGCGCCCGTGGCGACTCGgcg                          <  2:28170/148‑1 (MQ=255)                                                                                                                            ggCAACCTGAGCCGCTCGGTAGAGCCGCCACACCCGTGGTCGCTGATCTGGAGCGCGCCCAGCACAGGCGGCAAGCAGATCCAGCCGATCGAGATGCAGAACCAGACAGCCACCCCCCTGGAACTGGGCGCCCGTGGCGACTCGGCGCt                        >  8:301119/1‑149 (MQ=255)                                                                                                                                 cgtGAGCCGCTCGGTAGAGCGGCCACACCCGTGGTCGCTGATCTGGAGCGCGCCCAGCACAGGCGGCAAGCAGATCCAGCCGATCGAGATGCAGAACCAGTCAGCCACCACCCTGGAACTGGGCGCCCGTGGCGACTCGGCGCTCg                      <  6:274026/144‑1 (MQ=255)                                                                                                                                 ccTGAGCCGCTCGGTAGAGCCGCCACACCCGTGGTCGCTGATCTGGAGCGCGCCCAGCACAGGCGGCAAGCAGATCCAGCCGATCGAGATGCAGAACCAGACAGCCACCACCCTGGAACTGGGCGCCCGTGGCGACTCGGCGCTCGGcc                   >  8:137197/1‑149 (MQ=255)                                                                                                                                 ccTGAGCCGCTCGGTAGAGCCGCCACACCCGTGGTCGCTGATCTGGAGCGCGCCCAGCACAGGCGGCAAGCAGATCCAGCCGATCGAGATGCAGAACCAGACAGCCACCACCCTGGAACTGGGCGCCCGTGGCGACTCGGCGCTCGGcc                   >  1:121053/1‑149 (MQ=255)                                                                                                                                  cTGAGCCGCTCGGTAGAGCCGCCACACCCGTGGTCGCTGATCTGGAGCGCGCCCAGCACAGGCGGCAAGCAGATCCAGCCGATCGAGATGCAGAACCAGACAGCCACCACCCTGGAACTGGGCGCCCGTGGCGACTCGGCGCTCGGCCg                  >  7:162523/1‑149 (MQ=255)                                                                                                                                     aGCCGCTCGGTAGAGCCGCCACACCCGTGGTCGCTGATCTGGAGCGCGCCCAGCACAGGCGGCAAGCAGATCCAGCCGATCGAGATGCAGAACCAGACAGCCACCACCCTGGAACTGGGCGCCCGTGGCGACTCGGCGCTCGGCCGCt                <  3:188033/148‑1 (MQ=255)                                                                                                                                     aGCCGCTCGGTAGAGCCGCCACACCCGTGGTCGCTGATCTGGAGCGCGCCCAGCACAGGCGGCAAGCAGATCCAGCCGATCGAGATGCAGAACCAGACAGCCACCACCCTGGAACTGGGCGCCCGTGGCGACTCGGCGCTCGGCCGCt                <  8:162523/148‑1 (MQ=255)                                                                                                                                          cTCGGTAGAGCCGCCACACCCGTGGTCGCTGATCTGGAGCGCGCCCAGCACAGGCGGCAAGCAGATCCAGCCGATCGAGATGCAGAACCAGACAGCCACCACCCTGGAACTGGGCGCCCGTGGCGACTCGGCGCTCGGCCGCTGGGAcc          >  1:217102/1‑149 (MQ=255)                                                                                                                                             ggTAGAGCCGCCACACCCGTGGTCGCTGATCTGGAGCGCGCCCAGCACAGGCGGCAAGCAGATCCAGCCGATCGAGATGCAGAACCAGACAGCCACCACCCTGGAACTGGGCGCCCGTGGCGACTCGGCGCTCGGCCGCTGGGAcctg        <  2:217102/148‑1 (MQ=255)                                                                                                                                             ggTAGAGCCGCCACACCCGTGGTCGCTGATCTGGAGCGCGCCCAGCACAGGCGGCAAGCAGATCCAGCCGATCGAGATGCAGAACCAGACAGCCACCACCCTGGAACTGGGCGCCCGTGGCGACTCGGCGCTCGGCCGCTGGGAcct         <  5:319837/147‑1 (MQ=255)                                                                                                                                                 gagCCGCCACACCCGTGGTCGCTGATCTGGAGCGCGCCCAGCACAGGCGGCAAGCAGATCCAGCCGATCGAGATGCAGAACCAGACa                                                                 >  2:72753/1‑87 (MQ=255)                                                                                                                                                 gagCCGCCACACCCGTGGTCGCTGATCTGGAGCGCGCCCAGCACAGGCGGCAAGCAGATCCAGCCGATCGAGATGCAGAACCAGACa                                                                 <  1:72753/87‑1 (MQ=255)                                                                                                                                                 gagCCGCCACACCCGTGGTCGCTGATCTGGAGCGCGCCCAGCACAGGCGGCAAGCAGATCCAGCCGATCGAGATGCAGAACCAGACAGCCACCACCCTGGAACTGGGCGCCCGTGGCGACTCGGCGCTCGGCCGCTGGGAcctggcctg   <  3:21860/149‑1 (MQ=255)                                                                                                                                                  agCCGCCACACCCGTGGTCGCTGATCTGGAGCGCGCCCAGCACAGGCGGCAAGCAGATCCAGCCGATCGAGATGCAGAACCAGACAGCCACCACCCTGGAACTGGGCGCCCGTGGCGACTCGGCGCTCGGCCGCTGGGAcctggcctgg  <  7:301119/149‑1 (MQ=255)                                                                                                                                                   GCCGCCACACCCGTGGTCGCTGATCTGGAGCGCGCCCAGCACAGGCGGCAAGCAGATCCAGCCGATCGAGATGCAGAACCAGACAGCCACCACCCTGGAACTGGGCGCCCGTGGCGACTCGGCGCTCGGCCGCTGGGAcctggcctgg  <  3:2727‑M1/148‑1 (MQ=255)                                                                                                                                                   |                                                                                                                                                    TACACGCGCCGCGAAAGTGACGTGACCTACCCCTCTGAAGGCGGCAAGGTGAGCATGCATGACTGGGACTATGCCCCCCGCCTGGGGCTGCGCTACGACATCCGCCCGGACTTGCAGGTGTACGGCAACCTGAGCCGCTCGGTAGAGCCGCCACACCCGTGGTCGCTGATCTGGAGCGCGCCCAGCACAGGCGGCAAGCAGATCCAGCCGATCGAGATGCAGAACCAGACAGCCACCACCCTGGAACTGGGCGCCCGTGGCGACTCGGCGCTCGGCCGCTGGGACCTGGCCTGG  >  NC_002947/4674456‑4674749

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.