New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4913709 =	46 (0.880)	4 (0.080)	4/246	NT	8.3%	coding (990/1989 nt)	ccmF	holocytochrome c synthetase
	?	NC_002947	4913769 =	46 (0.960)					coding (930/1989 nt)	ccmF	holocytochrome c synthetase

CAATGGGTACAGGGTACCGAGCAGAATCATCGAAGCCGCGACCACCAGCACCAGGTTGTTGGCCAGCAGCAGCGTTTCACGCGACCACAGGGCGAAACCGACCTG‑GCTCTTGACCACCGGTGCGCGCAGGGCGAACAGGGTGAGCGAGCCGCCGACCACGAACAGCAGGAAAAACAGGATGAAAATACCCCGCGACGGGTCGGCGGCAAACGCGTGCACCGAGGTCAGCACTCCGGAACGCACCAGGAAGGTACCCAGCAGGCTCAGGGAGAATGCGGCAATTGCCAGCAGCACG  >  NC_002947/4913562‑4913856                                                                                                                                                     |                                                                                                                                                    cAATGGGTACAGGGTACCGAGCAGAATCATCGAAGCCGCGACCACCAGCACCAGGTTGTTGGCCAGCAGCAGCGTTTCACGCGACCACAGGGCGAAACCGACCTG‑GCTCTTGACCACCGGTGCGCGCAGGGCGAACAGGGTgagcgagc                                                                                                                                                    >  3:265177/1‑149 (MQ=255) cAATGGGTACAGGGTACCGAGCAGAATCATCGAAGCCGCGACCACCAGCACCAGGTTGTTGGCCAGCAGCAGCGTTTCACGCGACCACAGGGCGAAACCGACCTG‑GCTCTTGACCACCGGTGCGCGCAGGGCGAACAGGGTgagcgagc                                                                                                                                                    >  2:182890/1‑149 (MQ=255)     gcactgatccactcgctggcggtgaccgagaaacgcggggtgttcaagagctggaccgtgctgctggcaattgccgcattctccctgagcctgctgggtaccttcctggtgcgttccggagtgctgacctcggtgcacgcgtttgccgc                                                                                                                                                 <  2:192153‑M1/5‑1 (MQ=255)      cactgatccactcgctggcggtgaccgagaaacgcggggtgttcaagagctggaccgtgctgctggcaattgccgcattctccctgagcctgctgggtaccttcctggtgcgttccggagtgctgacctcggtgcacgcgtttgccgcc                                                                                                                                                >  1:192153‑M1/144‑149 (MQ=255)       gTACAGGGTACCGAGCAGAATCATCGAAGCCGCGACCACCAGCACCAGGTTGTTGGCCAGCAGCAGCGTTTCACGCGACCACAGGGCGAAACCGACCTG‑GCTCTTGACCACCGGTGCGCGCAGGGCGAACAGGGTGAGCGAGCCGCCGa                                                                                                                                              >  5:120218/1‑149 (MQ=255)           atccactcgctggcggtgaccgagaaacgcggggtgttcaagagctggaccgtgctgctggcaattgccgcattctccctgagcctgctgggtaccttcctggtgcgttccggagtgctgacctcggtgcacgcgtttgc                                                                                                                                                    >  8:111840‑M1/139‑140 (MQ=255)           atccactcgctggcggtgaccgagaaacgcggggtgttcaagagctggaccgtgctgctggcaattgccgcattctccctgagcctgctgggtaccttcctggtgcgttccggagtgctgacctcggtgcacgcgtttgc                                                                                                                                                    <  7:111840‑M1/2‑1 (MQ=255)                    aGCAGAATCATCGAAGCCGCGACCACCAGCACCAGGTTGTTGGCCAGCAGCAGCGTTTCACGCGACCACAGGGCGAAACCGACCTG‑GCTCTTGACCACCGGTGCGCGCAGGGCGAACAGGGTGAGCGAGCCGCCGACCACGAAcagcag                                                                                                                                 <  8:249959/149‑1 (MQ=255)                    aGCAGAATCATCGAAGCCGCGACCACCAGCACCAGGTTGTTGGCCAGCAGCAGCGTTTCACGCGACCACAGGGCGAAACCGACCTG‑GCTCTTGACCACCGGTGCGCGCAGGGCGAACAGGGTGAGCGAGCCGCCGACCACGAAcagcag                                                                                                                                 >  7:106976/1‑149 (MQ=255)                           tcatcGAAGCCGCGACCACCAGCACCAGGTTGTTGGCCAGCAGCAGCGTTTCACGCGACCACAGGGCGAAACCGACCTG‑GCTCTTGACCACCGGTGCGCGCAGGGCGAACAGGGTGAGCGAGCCGCCGACCACGAACAGCAGGaaaaa                                                                                                                           >  7:38952/1‑148 (MQ=255)                                      gcgACCACCAGCACCAGGTTGTTGGCCAGCAGCAGCGTTTCACGCGACCACAGGGCGAAACCGACCTG‑GCTCTTGACCACCGGTGCGCGCAGGGCGAACAGGGTGAGCGAGCCGCCGACCATGAACAGCAGGAAAAACAGGATGaaaa                                                                                                                >  2:314724/1‑148 (MQ=255)                                           caccagcaccagGTTGTTGGCCAGCAGCAGCGTTTCACGCGACCACAGGGCGAAACCGACCTG‑GCTCTTGACCACCGGTGCGCGCAGGGCGAACAGGGTGAGCGAGCCGCCGACCACGAACAGCAGGAAAAACAGGATGAAAATAcccc                                                                                                          >  6:213526/1‑149 (MQ=255)                                             ccagcaccagGTTGTTGGCCAGCAGCAGCGTTTCACGCGACCACAGGGCGAAACCGACCTG‑GCTCTTGACCACCGGTGCGCGCAGGGCGAACAGGGTGAGCGAGCCGCCGACCACGAACAGCAGGAAAAACAGGATGAAAATACCCcgc                                                                                                        >  5:302596/1‑149 (MQ=255)                                                gcaccagGTTGTTGGCCAGCAGCAGCGTTTCACGCGACCACAGGGCGAAACCGACCTG‑GCTCTTGACCACCGGTGCGCGCAGGGCGAACAGGGTGAGCGAGCCGCCGACCACGAACAGCAGGAAAAACAGGATGAAAATACCCCGCGAc                                                                                                     <  3:311107/149‑1 (MQ=255)                                                 caagagctggaccgtgctgctggcaattgccgcattctccctgagcctgctgggtaccttcctggtgcgttccggagtgctgacctcggtgcacgcgtttGCCGCCGACCACGAACAGCAGGAAAAACAGGATGAAAATACCCCGCGAc                                                                                                     <  3:122612‑M1/49‑1 (MQ=255)                                                  accagGTTGTTGGCCAGCAGCAGCGTTTCACGCGACCACAGGGCGAAACCGACCTG‑GCTCTTGACCACCGGTGCGCGCAGGGCGAACAGGGTGAGCGAGCCGCCGACCACGAACAGCAGGAAAAACAGGATGAAAATACCCCGCGACgg                                                                                                   >  2:255485/1‑149 (MQ=255)                                                     agGTTGTTGGCCAGCAGCAGCGTTTCACGCGACCACAGGGCGAAACCGACCTG‑GCTCTTGACCACCGGTGCGCGCAGGGCGAACAGGGTGAGCGAGCCGCCGACCACGAACAGCAGGAAAAACAGGATGAAAATACCCCGCGACGGGTc                                                                                                <  4:282714/149‑1 (MQ=255)                                                           ttgGCCAGCAGCAGCGTTTCACGCGACCACAGGGCGAAACCGACCTG‑GCTCTTGACCACCGGTGCGCGCAGGGCGAACAGGGTGAGCGAGCCGCCGACCACGAACAGCAGGAAAAACAGGATGAAAATACCCCGCGACGGGTcggcgg                                                                                           >  3:97925/1‑148 (MQ=255)                                                           accgtgctgctggcaattgccgcattctccctgagcctgctgggtaccttcctggtgcgttccggagtgctgacctcggtgcacgcgtttGCCGCCGACCACGAACAGCAGGAAAAACAGGATGAAAATACCCCGCGACGGGTcggcgg                                                                                           >  4:122612‑M1/91‑149 (MQ=255)                                                               ccAGCAGCAGCGTTTCACGCGACCACAGGGCGAAACCGACCTG‑GCTCTTGACCACCGGTGCGCGCAGGGCGAACAGGGTGAGCGAGCCGCCGACCACGAACAGCAGGAAAAACAGGATGAAAATACCCCGCGACGGGTCGGCGGCAAAc                                                                                      >  7:24671/1‑149 (MQ=255)                                                                 agcagcagcGTTTCACGCGACCACAGGGCGAAACCGACCTG‑GCTCTTGACCACCGGTGCGCGCAGGGCGAACAGGGTGAGCGAGCCGCCGACCACGAACAGCAGGAAAAACAGGATGAAAATACCCCGCGACGGGTCGGCGGCAAAcgc                                                                                    >  7:62975/1‑149 (MQ=255)                                                                     gcagcGTTTCACGCGACCACAGGGCGAAACCGACCTG‑GCTCTTGACCACCGGTGCGCGCAGGGCGAACAGGGTGAGCGAGCCGCCGACCACGAACAGCAGGAAAAACAGGATGAAAATACCCCGCGACGGGTCGGCGGCAAACGCGTGc                                                                                >  8:210624/1‑149 (MQ=255)                                                                      cagcGTTTCACGCGACCACAGGGCGAAACCGACCTG‑GCTCTTGACCACCGGTGCGCGCAGGGCGAACAGGGTGAGCGAGCCGCCGACCACGAACAGCAGGAAAAACAGGATGAAAATACCCCGCGACGGGTCGGCGGCAAACGCGTGCa                                                                               >  8:57715/1‑149 (MQ=255)                                                                       agcGTTTCACGCGACCACAGGGCGAAACCGCCCTG‑GCTCTTGACCACCGGTGCGCGCAGGGCGAACAGGGTGAGCGAGCCGCCGACCACGAACAGCAGGAAAAACAGGATGAAAATACCCCGCGACGGGTCGGCGGCAAACGCGTGCAc                                                                              <  8:38952/149‑1 (MQ=255)                                                                       agcGTTTCACGCGACCACAGGGCGAAACCGACCTGAGCTCTTGACCACCGGTGCGCGCAGGGCGAACAGGGTGAGCGAGCCGCCGACCACGaa                                                                                                                                       >  1:48312/1‑93 (MQ=255)                                                                           tttCACGCGACCACAGGGCGAAACCGACCTG‑GCTCTTGACCACCGGTGCGCGCAGGGCGAACAGGGTGAGCGAGCCGCCGACCACGAACAGCAGGAAAAACAGGATGAAAATACCCCGCGACGGGTCGGCGGCAAACGCGTGCACCGAg                                                                          <  4:265177/149‑1 (MQ=255)                                                                                 gcgACCACAGGGCGAAACCGACCTG‑GCTCTTGACCACCGGTGCGCGCAGGGCGAACAGGGTGAGCGAGCCGCCGACCACGAACAGCAGGAAAAACAGGATGAAAATACCAAGCGACGGGTCGGCGGCAAACGCGTGCACCGAGATCAg                                                                     >  8:259408/1‑148 (MQ=255)                                                                                   ttctccctgagcctgctgggtaccttcctggtgcgttccggagtgctgacctcggtgcacgcgtttGCCGCCGACCACGAACAGCAGGAAAAACAGGATGAAAATACCCCGCGACGGGTCGGCGGCaa                                                                                        <  6:325749‑M1/62‑1 (MQ=255)                                                                                   ttctccctgagcctgctgggtaccttcctggtgcgttccggagtgctgacctcggtgcacgcgtttGCCGCCGACCACGAACAGCAGGAAAAACAGGATGAAAATACCCCGCGACGGGTCGGCGGCaa                                                                                        >  5:325749‑M1/67‑128 (MQ=255)                                                                                       acaGGGCGAAACCGACCTG‑GCTCTTGACCACCGGTGCGCGCAGGGCGAACAGGGTGAGCGAGCCGCCGACCACGAACAGCAGGAAAAACAGGATGAAAATACCCCGCGACGGGTCGGCGGCAAACGCGTGCACCGAGGTCAGCACTCCg                                                              >  8:220274/1‑149 (MQ=255)                                                                                             cGAAACCGACCTG‑GCTCTTGACCACCGGTGCGCGCAGGGCGAACAGGGTGAGCGAGCCGCCGACCACGAACAGCAGGAAAAACAGGATGAAAATACCCCGCGACGGGTCGGCGGCAAACGCGTGCACCGAGGTCAGCACTCCGGAACg                                                         >  3:174615/1‑148 (MQ=255)                                                                                             cGAAACCGACCTG‑GCTCTTGACCACCGGTGCGCGCAGGGCGAACAGGGTGAGCGAGCCGCCGACCACGAACAGCAGGAAAAACAGGATGAAAATACCCCGCGACGGGTCGGCGGCAAACGCGTGCACCGAGGTCAGCACTCCGGAACGc                                                        <  7:220274/149‑1 (MQ=255)                                                                                              gAAACCGACCTG‑GCTCTTGACCACCGGTGCGCGCAGGGCGAACAGGGTGAGCGAGCCGCCGACCACGAACAGCAGGAAAAACAGGATGAAAATACCCCGCGACGGGTCGGCGGCAAACGCGTGCACCGAGGTCAGCACTCCGGAACGCa                                                       <  8:157974/149‑1 (MQ=255)                                                                                                 aCCGACCTG‑GCTCTTGACCACCGGTGCGCGCAGGGCGAACAGGGTGAGCGAGCCGCCGACCACGAACAGCAGGAAAAACAGGATGAAAATACCCCGCGACGGGTCGGCGGCAAACGCGTGCACCGAGGTCAGCACTCCGGAACGCACCa                                                    <  5:213526/149‑1 (MQ=255)                                                                                                 aCCGACCTG‑GCTCTTGACCACCGGTGCGCGCAGGGCGAACAGGGTGAGCGAGCCGCCGACCACGAACAGCAGGAAAAACAGGATGAAAATACCCCGCGACGGGTCGGCGGCAAACGCGTGCACCGAGGTCAGCACTCCGGAACGCACCa                                                    <  2:142941/149‑1 (MQ=255)                                                                                                      ccTG‑GCTCTTGACCACCGGTGCGCGCAGGGCGAACAGGGTGAGCGAGCCGCCGACCACGAACAGCAGGAAAAACAGGATGAAAATACCCCGCGACGGGTCGGCGGCAAACGCGTGCACCGAGGTCAGCACTCCGGAACGCACCAGGAAg                                               <  6:120218/149‑1 (MQ=255)                                                                                                           gCTCTTGACCACCGGTGCGCGCAGGGCGAACAGGGTGAGCGAGCCGCCGACCACGAACAGCAGGAAAAACAGGATGAAAATACCCCGCGACGGGTCGGCGGCAAACGCGTGCACCGAGGTCAGCACTCCGGAACGCACCAGGAAGGTAc                                           <  1:255485/149‑1 (MQ=255)                                                                                                             tctTGACCACCGGTGCGCGCAGGGCGAACAGGGTGAGCGAGCCGCCGACCACGAACAGCAGGAAAAACAGGATGAAAATACCCCGCGACGGGTCGGCGGCAAACGCGTGCACCGAGGTCAGCACTCCGGAACGCACCAGGAAGGTAccc                                         >  7:289553/1‑149 (MQ=255)                                                                                                                 gACCACCGGTGCGCGCAGGGCGAACAGGGTGAGCGAGCCGCCGACCACGAACAGCAGGAAAAACAGGATGAAAATACCCCGCGACGGGTCGGCGGCAAACGCGTGCACCGAGGTCAGCACTCCGGAACGCACCAGGAAGGTACCcag                                       >  6:283579/1‑147 (MQ=255)                                                                                                                        ggTGCGCGAAGTGCGAACAGGGTGAGCGAGCCGCCGACCACGAAGAGCAGGAAAAACAGGATGAAAATAGCCCGCGACGGGTCGGCGGCAAACGCGTGCACCGAGGTCAGCACTCCGGAACGCACCAGGAAGGTACCCAGCAGGCTCAg                              <  8:289553/149‑1 (MQ=255)                                                                                                                         gTGCGCGCAGGGCGAACAGGGTGAGCGAGCCGCCGACCACGAACAGCAGGAAAAACAGGATGAAAATACCCCGCGACGGGTCGGCGGCAAACGCGTGCACCGAGGTCAGCACTCCGGAACGCACCAGGAAGGTACCCAGCAGGCTCAgg                             <  3:63955/149‑1 (MQ=255)                                                                                                                            cgcgcAGGGCGAACAGGGTGAGCGAGCCGCCGACCACGAACAGCAGGAAAAACAGGATGAAAATACCCCGCGACGGGTCGGCGGCAAACGCGTGCACCGAGGTCAGCACTCCGGAACGCACCAGGAAGGTACCCAGCAGTATCAGGga                           <  7:210624/148‑1 (MQ=255)                                                                                                                               gcAGGGCGAACAGGGTGAGCGAGCCGCCGACCACGAACAGCAGGAAAAACAGGATGAAAATACCCCGCGACGGGTCGGCGGCAAACGCGTGCACCGAGGTCAGCACTCCGGAACGCACCAGGAAGGTACCCAGCAGGCTCAGGGAGAAt                       >  7:181644/1‑149 (MQ=255)                                                                                                                                   ggCGAACAGGGTGAGCGAGCCGCCGACCATGAACAGCAGGAAAAACAGGATGAAAATACCCCGCGACGGGTCGGCGGCAAACGCGTGCACCGAGGTCAGCACTCCGGAACGCACCAGGAAGGTACCCAGCAGGCTCAGGGAGAATGCgg                   <  1:314724/149‑1 (MQ=255)                                                                                                                                   ggCGAACAGGGTGAGCGAGCCGCCGACCACGAACAGCAGGAAAAACAGGATGAAAATACCCCGCGACGGGTCGGCGGCAAACGCGTGCACCGAGGTCAGCACTCCGGAACGCACCAGGAAGGTACCCAGCAGGCTCAGGGAGAATGCgg                   <  1:182890/149‑1 (MQ=255)                                                                                                                                   ggCGAACAGGGTGAGCGAGCCGCCGACCACGAACAGCAGGAAAAACAGGATGAAAATACCCCGCGACGGGTCGGCGGCAAACGCGTGCACCGAGGTCAGCACTCCGGAACGCACCAGGAAGGTACCCAGCAGGCTCAGGGAGAATGCgg                   >  5:319487/1‑149 (MQ=255)                                                                                                                                      gAACAGGGTGAGCGAGCCGCCGACCACGAACAGCAGGAAAAACAGGATGAAAATACCCCGCGACGGGTCGGCGGCAAACGCGTGCACCGAGGTCAGCACTCCGGAACGCACCAGGAAg                                               <  7:171866/118‑1 (MQ=255)                                                                                                                                      gAACAGGGTGAGCGAGCCGCCGACCACGAACAGCAGGAAAAACAGGATGAAAATACCCCGCGACGGGTCGGCGGCAAACGCGTGCACCGAGGTCAGCACTCCGGAACGCACCAGGAAg                                               >  8:171866/1‑118 (MQ=255)                                                                                                                                      gAACAGGGTGAGCGAGCCGCCGACCACGAACAGCAGGAAAAACAGGATGAAAATACCCCGCGACGGGTCGGCGGCAAACGCGTGCACCGAGGTCAGCACTCCGGAACGCACCAGGAAGGTACCCAGCAGGCTCAGGGAGAATGCGGCaa                >  7:156143/1‑149 (MQ=255)                                                                                                                                        aCAGGGTGAGCGAGCCGCCGACCACGAACAGCAGGAAAAACAGGATGAAAATACCCCGCGACGGGTCGGCGGCAAACGCGTGCACCGAGGTCAGCACTCCGGAACGCACCAGGAAGGTACCCAGCAGGCTCAGGGAGAATGCGGCAAtt              <  6:302596/149‑1 (MQ=255)                                                                                                                                         cAGGGTGAGCGAGCCGCCGACCACGAACAGCAGGAAAAACAGGATGAAAATACCCCGCGACGGGTCGGCGGCAAACGCGTGCACCGAGGTCAGCACTCCGGAACGCACCAGGAAGGTACCCAGCAGGCTCAGGGAGAATGCGGCAATTg             >  2:164743/1‑149 (MQ=255)                                                                                                                                          aGGGTGAGCGAGCCGCCGACCACGAACAGCAGGAAAAACAGGATGAAAATACCCCGCGACGGGTCGGCGGCAAACGCGTGCACCGAGGTCAGCACTCCGGAACGCACCAGGAAGGTACCCAGCAGGCTCAGGGAGAATGCGGCAATTGc            <  8:181644/149‑1 (MQ=255)                                                                                                                                           gggTGAGCGAGCCGCCGACCACGAACAGCAGGAAAAACAGGATGAAAATACCCCGCGACGGGTCGGCGGCAAACGCGTGCACCGAGGTCAGCACTCCGGAACGCACCAGGAAGGTACCCAGCAGGCTCAGGGAGAATGCGGCAATTGc            >  2:257163/1‑148 (MQ=255)                                                                                                                                            ggTGAGCGAGCCGCCGACCACGAACAGCAGGAAAAACAGGATGAAAATACCCCGCGACGGGTCGGCGGCAAACGCGTGCACCGAGGTCAGCACTCCGGAACGCACCAGGAAGGTACCCAGCAGGCTCAGGGAGAATGCGGCAATTGc            >  7:145312/1‑147 (MQ=255)                                                                                                                                            ggTGAGCGAGCCGCCGACCACGAACAGCAGGAAAAACAGGATGAAAATACCCCGCGACGGGTCGGCGGCAAACGCGTGCACCGAGGTCAGCACTCCGGAACGCACCAGGAAGGTACCCAGCAGGCTCAGGGAGAATGCGGCAATTGCca          <  3:150820/149‑1 (MQ=255)                                                                                                                                            ggTGAGCGAGCCGCCGACCACGAACAGCAGGAAAAACAGGATGAAAATACCCCGCGACGGGTCGGCGGCAAACGCGTGCACCGAGGTCAGCACTCCGGAACGCACCAGGAAGGTACCCAGCAGGCTCAGGGAGAATGCGGCAATTGCca          <  4:174615/149‑1 (MQ=255)                                                                                                                                                 gcgagcCGCCGACCACGAACAGCAGGAAAAACAGGATGAAAATACCCCGCGACGGGTCGGCGGCAAACGCGTGCACCGAGGTCAGCACTCCGGAACGCACCAGGAAGGTACCCAGCAGGCTCAGGGAGAATGCGGCAATTGCcagcag      >  4:133941/1‑148 (MQ=255)                                                                                                                                                     GCCGCCGACCACGAACAGCAGGAAAAACAGGATGAAAATACCCCGCGACGGGTCGGCGGCAAACGCGTGCACCGAGGTCAGCTCTCCGGAACGCACCAGGAAGGTAACCAGCAGGCTCAGGGAGAATGCGGCAATTGCCAGCAGCACg  <  3:239545‑M1/148‑1 (MQ=255)                                                                                                                                                     |                                                                                                                                                    CAATGGGTACAGGGTACCGAGCAGAATCATCGAAGCCGCGACCACCAGCACCAGGTTGTTGGCCAGCAGCAGCGTTTCACGCGACCACAGGGCGAAACCGACCTG‑GCTCTTGACCACCGGTGCGCGCAGGGCGAACAGGGTGAGCGAGCCGCCGACCACGAACAGCAGGAAAAACAGGATGAAAATACCCCGCGACGGGTCGGCGGCAAACGCGTGCACCGAGGTCAGCACTCCGGAACGCACCAGGAAGGTACCCAGCAGGCTCAGGGAGAATGCGGCAATTGCCAGCAGCACG  >  NC_002947/4913562‑4913856

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.