New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | 5552330 = | 47 (0.900) | 5 (0.100) | 4/252 | NT | 9.9% | coding (1559/1566 nt) | PP_4882 | iron ABC transporter permease |
? | NC_002947 | 5552377 = | 46 (0.930) | intergenic (+40/+621) | PP_4882/PP_5717 | iron ABC transporter permease/hypothetical protein |
AGCCCGACCGGCATGACCACCCTGGCCACCGAGGTGTGGGCACACACAGCCAACGTCGAGTTCGCGGCGGCGGCGCCGTATGCGGCGTTGTTGATTGTGGTGTCGGGGTTGCCGGTGTATTTGCTGACTACGCGGATGTATTTGAACAAGGCTTGAAAGCTTGCCCAGGCCGCCATGTGGCCTGGGCACAAGCCTGAGTGCCTAGACTTCATCACAAGTTCACTTTAAAACTCTCACTAGCCAGTTGAAAGCAAAGAACAAGGTCGTAGATACTACAAGCCCCACCCAAGAGGG > NC_002947/5552182‑5552475 | aGCCCGACCGGCATGTCCACCCTGGCCACCGAGGTGTGGGCACACACAGCCAACGTCGAGTTCGCGGCGGCGGCGCCGTATGCGGCGTTGTTGATTGTGGTGTCGGGGTTGCCGGTGTATTTGCTGACTACGCGGATGTATTTGAACaa < 2:293283/149‑1 (MQ=255) tttcagatctcgagggtttcccaaggtctatgaaaagagttttgttaccctcttgggtggggcttgtagtatctacgaccttgttctttgctttcaactgcgctagtgagagttttaaagtgaacttgtgatgaagtctaggcactca > 1:235741‑M1/148‑148 (MQ=255) tttcagatctcgagggtttcccaaggtctatgaaaagagttttgttaccctcttgggtggggcttgtagtatctacgaccttgttctttgctttcaactggctagtgagagttttaaagtgaacttgtgatgaagtctaggcactcAgg < 7:160549‑M1/3‑1 (MQ=255) cccGACCGGCATGACCACCCTGGCCACCGAGGTGTGGGCACACACAGCCAACGTCGAGTTCGCGGCGGCGGCGCCGTATGCGGCGTTGTTGATTGTGGTGTCGGGGTTGCCGGTGTATTTGCTGACTACGCGGATGTATTTGAACAAgg > 7:232630/1‑149 (MQ=255) ttcagatctcgagggtttcccaaggtctatgaaaagagttttgttaccctcttgggtggggcttgtagtatctacgaccttgttctttgctttcaactggctagtgagagttttaaagtgaacttgtgatgaagtctaggcactcAGGc < 2:72446‑M1/4‑1 (MQ=255) cGACCGGCATGACCACCCAGGCCACCGACGTGTGGGCACACACAGCCAACGTCGAGTTCGCGGCGGCGGCGCCGTATGCCGCGTTGTTGATTGTGGTGTCGGGCTTGCCGGTGTATTTGCTGACTACGCGGATGTATTTGAACAAGGCt > 3:61544/1‑149 (MQ=255) gACCGGCATGAGCACCCTGGCCACCGAGGTGTGGGCACACACAGCCAACGTCGAGTTCGCGGCGGCGGCGCCGTATGCGGCGTTGTTGATTGTGGTGTCGGGGTTGCCGGTGTATTTGCTGACTACGCGGATGTATTTGAACAAGGCtt < 3:61669/149‑1 (MQ=255) gCATGACCACCCTGGCCACCGAGGTGTGGGCACACACAGCCAACGTCGAGTTCGCGGCGGCGGCGCCGTATGCGGCGTTGTTGATTGTGGTGTCGGGGTTGCCGGTGTATTTGCTGACTACGCGGATGTATTTGAACAAGGCTTGAAAg > 4:165180/1‑149 (MQ=255) gCATGACCACCCTGGCCACCGAGGTGTGGGCACACACAGCCAACGTCGAGTTCGCGGCGGCGGCGCCGTATGCGGCGTTGTTGATTGTGGTGTCGGGGTTGCCGGTGTATTTGCTGACTACGCGGATGTATTTGAACAAGGCTTGAAAg < 3:265738/149‑1 (MQ=255) cgagggtttcccaaggtctatgaaaagagttttgttaccctcttgggtggggcttgtagtatctacgaccttgttctttgctttcaactggctagtgagagttttaaagtgaacttgtgatgaagtctaggcactcAGGCTTGAAAGCt < 3:244765‑M1/13‑1 (MQ=255) aTGACCACCCTGGCCACCGAGGTGTGGGCACACACAGCCAACGTCGAGTTCGCGGCGGCGGCGCCGTATGCGGCGTTGTTGATTGTGGTGTCGGGGTTGCCGGTGTATTTGCTGACTACGCGGATGTATTTGAACAAGGCTTGAAAGCt > 7:174024/1‑149 (MQ=255) caccCTGGCCACCGAGGTGTGGGCACACACAGCCAACGTCGAGTTCGCGGCGGCGGCGCCGTATGCGGCGTTGTTGATTGTGGTGTCGGGGTTGCCGGTGTATTTGCTGACTACGCGGATGTATTTGAACAAGGCTTGAAAGCTTGcc > 1:190674/1‑148 (MQ=255) ccTGGCCACCGAGGTGTGGGCACACACAGCCAACGTCGAGTTCGCGGCGGCGGCGCCGTATGCGGCGTTGTTGATTGTGGTGTCGGGGTTGCCGGTGTATTTGCTGACTACGCGGATGTATTTGAACAAGGCTTGAAAGCTTGCCCAgg > 4:251381/1‑149 (MQ=255) ccGAGGTGTGGGCACACACAGCCAACGTCGAGTTCGCGGCGGCGGCGCCGTATGCGGCGTTGTTGATTGTGGTGTCGGGGTTGCCGGTGTATTTGCTGACTACGCGGATGTATTTGAACAAGGCTTGAAAGCTTGCCCAGGCCGCCAtg > 7:234597/1‑149 (MQ=255) cGAGGTGTGGGCACACACAGCCAACGTCGAGTTCGCGGCGGCGGCGCCGTATGCGGCGTTGTTGATTGTGGTGTCGGGGTTGCCGGTGTATTTGCTGACTACGCGGATGTATTTGAACAAGGCTTGAAAGCTTGCCCAGGCCGCCAtgt > 6:300406/1‑149 (MQ=255) tgtgGGCACACACAGCCAACGTCGAGTTCGCGGCGGCGGCGCCGTATGCGGCGTTGTTGATTGTGGTGTCGGGGTTGCCGGTGTATTTGCTGACTACGCGGATGTATTTGAACAAGGCTTGAAAGCTTGCCCAGGCCGCCATGTGGCCt < 8:234597/149‑1 (MQ=255) tgGGCACACACAGCCAACGTCGAGTTCGCGGCGGCGGCGCCGTATGTGGCGTTGTTGATTGTGGTGTCGGGGTTGCCGGTGTATTTGCTGACTACGCGGATGTATTTGAACAAGGCTTGAAAGCTTGCCCAGGCCGCCATGTGGCCTgg < 2:324470/149‑1 (MQ=255) tgGGCACACACAGCCAACGTCGAGTTCGCGGCGGCGGCGCCGTATGCGGCGTTGTTGATTGTGGTGTCGGGGTTGCCGGTGTATTTGCTGACTACGCGGATGTATTTGAACAAGGCTTGAAAGCTTGCCCAGGCCGCCATGTGGCCTg < 7:10358/148‑1 (MQ=255) caGCCAACGTCGAGTTCGCGGCGGCGGCGCCGTATGCGGCGTTGTTGATTGTGGTGTCGGGGTTGCCGGTGTATTTGCTGACTACGCGGATGTATTTGAACAAGGCTTGAAAGCTTGCCCAGGCCGCCATGTGGCCTGGGCACAAGCCt < 3:165180/149‑1 (MQ=255) ccctcttgggtggggcttgtagtatctacgaccttgttctttgctttcaactggctagtgagagttttaaagtgaacttgtgatgaagtctaggcactcAGGCTTGAAAGCTTGCCCAGGCCGCCATGTGGCCTGGGCACAAGCCTGa > 8:87733‑M1/100‑148 (MQ=255) ccctcttgggtggggcttgtagtatctacgaccttgttctttgctttcaactggctagtgagagttttaaagtgaacttgtgatgaagtctaggcactcAGGCTTGAAAGCTTGCCCAGGCCGCCATGTGGCCTGGGCACAAGCCTGa > 1:72446‑M1/100‑148 (MQ=255) ccAACGTCGAGTTCGCGGCGGCGGCGCCGTATGCGGCGTTGTTGATTGTGGTGTCGGGGTTGCCGGTGTATTTGCTGACTACGCGGATGTATTTGAACAAGGCTTGAAAGCTTGCCCAGGCCGCCATGTGGCCTGGGCACAAGCCTGAg > 5:274272/1‑149 (MQ=255) cctcttgggtggggcttgtagtatctacgaccttgttctttgctttcaactggctagtgagagttttaaagtgaacttgtgatgaagtctaggcactcAGGCTTGAAAGCTTGCCCAGGCCGCCATGTGGCCTGGGCACAAGCCTGAGt > 4:244765‑M1/99‑149 (MQ=255) cAACGTCGAGTTCGCGGCGGCGGCGCCGTATGCGGCGTTGTTGATTGTGGTGTCGGGGTTGCCGGTGTATTTGCTGACTACGCGGATGTATTTGAACAAGGCTTGAAAGCTTGCCCAGGCCGCCATGTGGCCTGGGCACAAGCCTGAGt > 3:205660/1‑149 (MQ=255) cGTCGAGTTCGCGGCGGCGGCGCCGTATGCGGCGTTGTTGATTGTGGTGTCGGGGTTGCCGGTGTATTTGCTGACTACGCGGATGTATTTGAACAAGGCTTGAAAGCTTGCCCAGGCCGCCATGTGGCCTGGGCACAAGCCTGAGTGcc > 3:29202/1‑149 (MQ=255) ttgggtggggcttgtagtatctacgaccttgttctttgctttcaactggctagtgagagttttaaagtgaacttgtgatgaagtctaggcactcAGGCTTGAAAGCTTGCCCAGGCCGCCATGTGGCCTGGGCACAAGCCTGAGTGc > 5:194445‑M1/95‑147 (MQ=255) gAGTTCGCGGCGGCGGCGCCGTATGCGGCGTTGTTGATTGTGGTGTCGGGGTTGCCGGTGTATTTGCTGACTACGCGGATGTATTTGAACAAGGCTTGAAAGCTTGCCCAGGCCGCCATGTGGCCTGGGCACAAGCCTGAGTGCCTAGa > 8:239448/1‑149 (MQ=255) gcggcggcggcgCCGTATGCGGCGTTGTTGATTGTGGTGTCGGGGTTGCCGGTGTATTTGCTGACTACGCGGATGTATTTGAACAAGGCTTGAAAGCTTGCCCAGGCCGCCATGTGGCCTGGGCACAAGCCTGAGTGCCTAGACTtcat < 3:251381/149‑1 (MQ=255) ggcggcggcgCCGTATGCTGCGTTGTTGATTGTGGTGTCGGGGTTGCCTGTGTATTTGCTGACTACGCGGATGTATTTGAACAAGGCTTGAAAGCTTGCCCAGGCCGCCATGTGGCCTGGGCACAAGCCTGAGTGCCTAGACTtcatca < 4:61544/149‑1 (MQ=255) ggcggcggcgCCGTATGCGGCGTTGTTGATTGTGGTGTCGGGGTTGCCGGTGTATTTGCTGACTACGCGGATGTATTTGAACAAGGCTTGAAAGCTTGCCCAGGCCGCCATGTGGCCTGGGCACAAGCCTGAGTGCCTAGACTtcatca < 1:111352/149‑1 (MQ=255) ggcggcgCCGTATGCGGCGTTGTTGATTGTGGTGTCGGGGTTGCCGGTGTATTTGCTGACTACGCGGATGTATTTGAACAAGGCTTGAAAGCTTGCCCAGGCCGCCATGTGGCCTGGGCACAAGCCTGAGTGCCAAGACTTCATCACaa < 5:300406/149‑1 (MQ=255) ggcgTTGTTGATTGTGGTGTCGGGGTTGCCGGTGTATTTGCTGACTACGCGGATGTATTTGAACAAGGCTTGAAAGCTTGCCCAGGCCGCCATGTGGCCTGGGCACAAGCCTGAGTGCCTAGACTTCATCACAAGTTCACTTTAAAAct < 2:10550/149‑1 (MQ=255) cgTTGTTGATTGTGGTGTCGGGGTTGCCGGTGTATTTGCTGACTACGCGGATGTATTTGAACAAGGCTTGAAAGCTTGCCCAGGCCGCCATGTGGCCTGGGCACAAGCCTGAGTGCCTAGACTTCATCACAAGTTCACTTTAAAActct < 8:174024/149‑1 (MQ=255) gttgttGATTGTGGTGTCGGGGTTGCCGGTGTATTTGCTGACTACGCGGATGTATTTGAACAAGGCTTGAAAGCTTGCCCAGGCCGCCATGTGGCCTGGGCACAAGCCTGAGTGCCTAGACTTCATCACAAGTTCACTTTAAAACtctc < 7:239448/149‑1 (MQ=255) gttgATTGTGGTGTCGGGGTTGCCGGTGTATTTGCTGACTACGCGGATGTATTTGAACAAGGCTTGAAAGCTTGCCCAGGCCGCCATGTGGCCTGGGCACAAGCCTGAGTGCCTAGACTTCATCACAAGTTCACTTTAAAACTCTCAc > 3:224796/1‑148 (MQ=255) ttgATTGTGGTGTCGGGGTTGCCGGTGTATTTGCTGACTACGCGGATGTATTTGAACAAGGCTTGAAAGCTTGCCCAGGCCGCCATGTGGCCTGGGCACAAGCCTGAGTGCCTAGACTTCATCACAAGTTCACttt > 6:77863/1‑136 (MQ=255) ttgATTGTGGTGTCGGGGTTGCCGGTGTATTTGCTGACTACGCGGATGTATTTGAACAAGGCTTGAAAGCTTGCCCAGGCCGCCATGTGGCCTGGGCACAAGCCTGAGTGCCTAGACTTCATCACAAGTTCACttt < 5:77863/136‑1 (MQ=255) gATTGTGGTGTCGGGGTTGCCGGTGTATTTGCTGACTACGCGGATGTATTTGAACAAGGCTTGAAAGCTTGCCCAGGCCGCCATGTGGCCTGGGCACAAGCCTGAGTGCCTAGACTTCATCACAAGTTCACTTTAAAACTCTCACTAGc > 1:173940/1‑149 (MQ=255) aTTGTTGTGTCGGGGTTGCCGGTGTATTTGCTTACTACGCGGATGTATTTGAACAATGCTTGAAAGCTTGCCCAGGCCGCCATGTGGCCTGGGCACAAGCCTGAGTGCCTAGACTTCATCACAAGTTCACTTTAAAACTCTCACTAGc < 4:46294/148‑1 (MQ=255) tggtgTCGGGGTTGCCGGTGTATTTGCTGACTACGCGGATGTATTTGAACAAGGCTTGAAAGCTTGCCCAGGCCGCCATGTGGCCTGGGCACAAGCCTGAGTGCCTAGACTTCATCACAAGTTCACTTTAAAACTCTCACTAGCCAGt < 6:274272/148‑1 (MQ=255) gtgtCGGGGTTGCCGGTGTATTTGCTGACTACGCGGATGTATTTGAACAAGGCTTGAAAGCTTGCCCAGGCCGCCATGTGGCCTGGGCACAAGCCTGAGTGCCTAGACTTCATCACAAGTTCACTTTAAAACTCTCACTAGCCAGTTGa < 4:205660/149‑1 (MQ=255) tCGGGGTTGCCGGTGTATTTGCTGACTACGCGGATGTATTTGAACAAGGCTTGAAAGCTTGCCCAGGCCGCCATGTGGCCTGGGCACAAGCCTGAGTGCCTAGACTTCATCACAAGTTCACTTTAAAACTCTCACTAGCCAGTTGaaa < 2:173940/148‑1 (MQ=255) tCGGGGTTGCCGGTGTATTTGCTGACTACGCGGATGTATTTGAACAAGGCTTGAAAGCTTGCCCAGGCCGCCATGTGGCCTGGGCACAAGCCTGAGTGCCTAGACTTCATCACAAGTTCACTTTAAAACTCTCACTAGCCAGTTGaaa < 4:29202/148‑1 (MQ=255) tCGGGGTTGCCGGTGTATTTGCTGACTACGCGGATGTATTTGAACAAGGCTTGAAAGCTTGCCCAGGCCGCCATGTGGCCTGGGCACAAGCCTGAGTGCCTAGACTTCATCACAAGTTCACTTTAAAACTCTCACTAGCCAGTTGaaa < 8:126832/148‑1 (MQ=255) tCGGGGTTGCCGGTGTATTTGCTGACTACGCGGATGTATTTGAACAAGGCTTGAAAGCTTGCCCAGGCCGCCATGTGGCCTGGGCACAAGCCTGAGTGCCTAGACTTCATCACAAGTTCACTTTAAAACTCTCACTAGCCAGTTGAAAg < 2:190674/149‑1 (MQ=255) aatatgtccGGTGTATTTGCTGACTACGCGGATGTATTTGAACAAGGCTTGAAAGCTTGCCCAGGCCGCCATGTGGCCTGGGCACAAGCCTGAGTGCCTAGACTTCATAACAAGTTCACTTTAAAACTCTCACTAGCCAGTTGaaa < 3:48697/139‑1 (MQ=255) cGGTGTATTTGCTGACTACGCGGATGTATTTGAACAAGGCTTGAAAGCTTGCCCAGGCCGCCATGTGGCCTGGGCACAAGCCTGAGTGCCTAGACTTCATCACAAGTTCACTTTAAAACTCTCACTAGCCAGTTGaaa > 4:48697/1‑138 (MQ=255) gtgtATTTGCTGACTACGCGGATGTATTTGAACAAGGCTTGAAAGCTTGCCCAGGCCGCCATGTGGCCTGGGCACAAGCCTGAGTGCCTAGACTTCATCACAAGTTCACTTTAAAACTCTCACTAGCCAGTTGAAAGCAAAGAACAAgg < 6:129556/149‑1 (MQ=255) tttGCTGACTACGCGGATGTATTTGAACAAGGCTTGAAAGCTTGCCCAGGCCGCCATGTGGCCTGGGCACAAGCCTGAGTGCCTAGACTTCATCACAAGTTCACTTTAAAACTCTCACTAGCCAGTTGAAAGCAAAGAACAAGGTCGt < 4:224796/148‑1 (MQ=255) ttGCTGACTACGCGGATGTATTTGAACAAGGCTTGAAAGCTTGCCCAGGCCGCCATGTGGCCTGGGCACAAGCCTGAGTGCCTAGACTTCATCACAAGTTCACTTTAAAACTCTCACTAGCCAGTTGAAAGCAAAGAACAAGGTCg > 4:180328/1‑146 (MQ=255) cgcgGATGTATTTGAACAAGGCTTGAAAGCTTGCCCAGGCCGCCATGTGGCCTGGGCACAAGCCTGAGTGCCTAGACTTCATCACAAGTTCACTTTAAAACTCTCACTAGCCAGTTGAAAGCAAAGAACAAGGTCGTAGATACTACAAg > 4:38831/1‑149 (MQ=255) aTTTGAACAAGGCTTGAAAGCTTGCCCAGGCCGCCATGTGGCCTGGGCACAAGCCTGAGTGCCTAGACTTCATCACAAGTTCACTTTAAAACTCTCACTAGCCAGTTGAAAGCAAAGAACAAGGTCGTAGATACTACAAGCcccaccc > 7:187596/1‑148 (MQ=255) aTTTGAACAAGGCTTGAAAGCTTGCCCAGGCCGCCATGTGGCCTGGGCACAAGCCTGAGTGCCTAGACTTCATCACAAGTTCACTTTAAAACTCTCACTAGCCAGTTGAAAGCAAAGAACAAGGTCGTAGATACTACAAGCcccac > 7:36143/1‑146 (MQ=255) aTTTGAACAAGGCTTGAAAGCTTGCCCAGGCCGCCATGTGGCCTGGGCACAAGCCTGAGTGCCTAGACTTCATCACAAGTTCACTTTAAAACTCTCACTAGCCAGTTGAAAGCAAAGAACAAGGTCGTAGATACTACAAGCcccac < 8:36143/146‑1 (MQ=255) tttGAACAAGGCTTGAAAGCTTGCCCAGGCCGCCATGTGGCCTGGGCACAAGCCTGAGTGCCTAGACTTCATCACAAGTTCACTTTAAAACTCTCACTAGc < 3:51090/101‑1 (MQ=255) tttGAACAAGGCTTGAAAGCTTGCCCAGGCCGCCATGTGGCCTGGGCACAAGCCTGAGTGCCTAGACTTCATCACAAGTTCACTTTAAAACTCTCACTAGc > 4:51090/1‑101 (MQ=255) tttGAACAAGGCTTGAAAGCTTGCCCAGGCCGCCATGTGGCCTGGGCACAAGCCTGAGTGCCTAGACTTCATCACAAGTTCACTTTAAAACTCTCACTAGCCAGTTGAAAGCAAAGAACAAGGTCGTAGATACTACAAGCcccaccc > 6:28510/1‑147 (MQ=255) tttGAACAAGGCTTGAAAGCTTGCCCAGGCCGCCATGTGGCCTGGGCACAAGCCTGAGTGCCTAGACTTCATCACAAGTTCACTTTAAAACTCTCACTAGCCAGTTGAAAGCAAAGAACAAGGTCGTAGATACTACAAGCCCCACCCaa < 3:38831/149‑1 (MQ=255) aCAAGGCTTGAAAGCTTGCCCAGGCCGCCATGTGGCCTGGGCACAAGCCTGAGTGCCTAGACTTCATCACAAGTTCACTTTAAAACTCTCACTAGCCAGTTGAAAGCAAAGAACAAGGTCGTAGATACTACAAGCCCCACCCAAGAggg > 5:13738/1‑149 (MQ=255) | AGCCCGACCGGCATGACCACCCTGGCCACCGAGGTGTGGGCACACACAGCCAACGTCGAGTTCGCGGCGGCGGCGCCGTATGCGGCGTTGTTGATTGTGGTGTCGGGGTTGCCGGTGTATTTGCTGACTACGCGGATGTATTTGAACAAGGCTTGAAAGCTTGCCCAGGCCGCCATGTGGCCTGGGCACAAGCCTGAGTGCCTAGACTTCATCACAAGTTCACTTTAAAACTCTCACTAGCCAGTTGAAAGCAAAGAACAAGGTCGTAGATACTACAAGCCCCACCCAAGAGGG > NC_002947/5552182‑5552475 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |