New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5816854 =	38 (0.730)	6 (0.130)	6/230	NT	19.1%	intergenic (+40/+89)	PP_5092/pilT	NLP/P60 protein/twitching motility protein
	?	NC_002947	5816917 =	18 (0.400)					intergenic (+103/+26)	PP_5092/pilT	NLP/P60 protein/twitching motility protein

CGGGTGAGTATCGACACCTTGAGCAAGCCTTACTGGCAGAAGCACTACGTGGTGGCCAAGCGGGTGCTGCCGAAAGAGCAGCAGCTGAGTCTGGCCAAGCGTTAAGCTGATCGGCGCTATCCGGTACCGGCCCCTTCGCGGGCACGCCCGCTCCCACAGGTAGCGCGTCGCTCTCGCGCGCAGCTC‑‑ACATACCTGTGGGAGCGGGCGCGCCCGCGAAAGGGCCTTTGCAGGTACTACAAGCCTTTGATCAACCCTCGCTCCCTCAGCCTCCGCAACG  >  NC_002947/5816710‑5816986                                                                                                                                                 |                                                                                                                                       cGGGTGAGTATCGACACCTTGAGCAAGCCTTACTGGCAGAAGCACTACGTGGTGGCCAAGCGGGTGCTGCCGAAAGAGCAGCAGCTGAGTCTGGCCAAGCGTTAAGCTGATCGGCGCTATCCGGTACCGGCCCCTTCGCGGGCACGccc                                                                                                                                    <  5:166128/149‑1 (MQ=255)   ggTGAGTATCGACACCTTGAGCAAGCCTTACTGGCAGAAGCACTACGTGGTGGCCAAGCGGGTGCTGCCGAAAGAGCAGCAGCTGAGTCTGGCCAAGCGTTAAGCTGATCGGCGCTATCCGGTACCGGCCCCTTCGCGGGCACGCCCGc                                                                                                                                  >  6:124311/1‑149 (MQ=255)    ggggcggttggcgcagttgtcttcagtgatgcagggcggggcggcggaggggatgctgacgatggagggggcgttgcggaggctgagggagcgagggttgatcaaaggcttgtagtacctgcaaaggcactttcgcgggcgCGACCGc                                                                                                                                  <  7:10352‑M1/7‑1 (MQ=255)    gTGAGTATCGACACCTTGAGCAAGCCTTACTGGCAGAAGCACTACGTGGTGGCCAAGCGGGTGCTGCCGAAAGAGCAGCAGCTGAGTCTGGCCAAGCGTTAAGCTGATCGGCGCTATCCGGTACCGGCCCCTTCGCGGGCACGCCCGCt                                                                                                                                 >  4:200043/1‑149 (MQ=255)    gTGAGTATCGACACCTTGAGCAAGCCTTACTGGCAGAAGCACTACGTGGTGGCCAAGCGGGTGCTGCCGAAAGAGCAGCAGCTGAGTCTGGCCAAGCGTTAAGCTGATCGGCGCTATCCGGTACCGGCCCCTTCGCGGGCACGCCCGCt                                                                                                                                 >  3:156375/1‑149 (MQ=255)        gTATCGACACCTTGAGCAAGCCTTACTGGCAGAAGCACTACGTGGTGGCCAAGCGGGTGCTGCCGAAAGAGCAGCAGCTGAGTCTGGCCAAGCGTTAAGCTGATCGGCGCTATCCGGTACCGGCCCCTTCGCGGGCACGCCCGCTCCca                                                                                                                             <  4:156375/149‑1 (MQ=255)          gtgggcgctgtgggctgccgtgagcccggccgggccggcgccggggatgctgacgatggagggggcgttgcggaggctgagggagcgagggttgatcaaaggcttgtagtacctgcaaaggccctttcgcgggcgCGCCCGCTCCcaca                                                                                                                           >  3:286089‑M1/136‑149 (MQ=255)             gACACCTTGAGCAAGCCTTACTGGCAGAAGCACTACGTGGTGGCCAAGCGGGTGCTGCCGAAAGAGCAGCAGCTGAGTCTGGCCAAGCGTTAAGCTGATCGGCGCTATCCGGTACCGGCCCCTTCGCGGGCGCGCCCGCTCCCACAgg                                                                                                                         <  7:163684/148‑1 (MQ=255)                acCTTGAGCAAGCCTTACTGGCAGAAGCACTACGTGGTGGCCAAGCGGGTGCTGCCGAAACAGCAGCAGCTGAGTCTGGCCAAGCGTTAAGCTGATCGGCGCTATCCGGTACCGGCCCCTTCGCGCGCACGCCCGCTCCCCCAGGTaac                                                                                                                     >  8:185676/1‑147 (MQ=255)                  cTTGAGCAAGCCTTACTGGCAGAAGCACTACGTGGTGGCCAAGCGGGTGCTGCCGAAAGAGCAGCAGCTGAGTCTGGCCAAGCGTTAAGCTGATCGGCGCTATCCGGTACCGGCCCCTTCGCGGGCACGCCCGCTCCCACAGGTAgcgc                                                                                                                   >  5:294005/1‑149 (MQ=255)                     gAGCAAGCCTTACTGGCAGAAGCACTACGTGGTGGCCAAGCGGGTGCTGCCGAAAGAGCAGCAGCTGAGTCTGGCCAAGCGTTAAGCTGATCGGCGCTATCCGGTACCGGCCCCTTCGCGGGCACGCCCGCTCCCACAGGTAGCGCGt                                                                                                                 <  3:142368/148‑1 (MQ=255)                       tcttcagtgatgcagggcggggcggcggaggggatgctgacgatggagggggcgttgcggaggctgagggagcgagggttgatcaaaggcttgtagtacctgcaaaggccccttcgcgggcaCGCCCGCTCCCACAGGTAGCGCGTCGc                                                                                                              <  3:135252‑M1/27‑1 (MQ=255)                          tcagtgatgcagggcggggcggcggaggggatgctgacgatggagggggcgttgcggaggctgagggagcgagggttgatcaaaggcttgtagtacctgcaaaggccctttcgcgggcgCGCCAGCTCCCACAGGTAGCGCGTCGctct                                                                                                           <  5:16778‑M1/30‑1 (MQ=255)                           gCCTTACTGGCAGAAGCACTACTTGGTGGCCAAGCGGGTGCTGCCGAAAGAGCAGCAGCTGAGTCTGGCCAAGCGTTAAGCTGATCGGCGCTATCCGGTACCGGCCCCTTCGCGGGCACGCCCGCTCCCACAGGTAGCGCGTCGCtctc                                                                                                          <  1:176704/149‑1 (MQ=255)                           gCCTTACTGGCAGAAGCACTACGTGGTGGCCAAGCGGGTGCTGCCGAAAGAGCAGCAGCTGAGTCTGGCCAAGCGTTAAGCTGATCGGCGCTATCCGGTACCGGCCCCTTCGCGGGCACGCCCGCTCCCACAGGTAGCGCGTCGCtctc                                                                                                          <  3:200043/149‑1 (MQ=255)                           gCCTTACTGGCAGAAGCACTACGTGGTGGCCAAGCAGGTGCTGCCGAAAGAGCAGCAGCTGAGTCTGGCCAAGCGTTAAGCTGATCGGCGCTATCCGGTACCGGCCCCTTCGCGGGCACGCCCGCTCCCACAGGTAGCGCGTCGCtctc                                                                                                          >  5:184746/1‑149 (MQ=255)                            ccTTACTGGCAGAAGCACTACGTGGTGGCCAAGCGGGTGCTGCCGAAAGAGCAGCAGCTGAGTCTGGCCAAGCGTTAAGCTGATCGGCGCTATCCGGTACCGGCCCCTTCGCGGGCACGCCCGCTCCCACAGGTAGCGCGTCGCTCTcg                                                                                                         >  2:241894/1‑149 (MQ=255)                              ttACTGGCAGAAGCACTACGTGGTGGCCAAGCGGGTGCTGCCGAAAGAGCAGCAGCTGAGTCTGGCCAAGCGTTAAGCTGATCGGCGCTATCCGGTACCGGCCCCTTCGCGGGCACGCCCGCTCCCACAGGTAGCGCGTCGCTCTcgcg                                                                                                       >  7:126412/1‑149 (MQ=255)                                    gCAGAAGCACTACGTGGTGGCCAAGCGGGTGCTGCCGAAAGAGCAGCAGCTGAGTCTGGCCAAGCGTTAAGCTGATCGGCGCTATCCGGTACCGGCCCCTTCGCGGGCACGCCCCCGCCCACACGTAGCGCGTCGCTCGAGCGcgccgc                                                                                                 >  1:271163/1‑149 (MQ=255)                                          gCACTACGTGGTGGCCAAGCGGGTGCTGCCGAAAGAGCAGCAGCTGAGTCTGGCCAAGCGTTAAGCTGATCGGCGCTATCCGGTACCGGCCCCTTCGCGGGCCCGCCCGCTCCCACAGGTAGCGCGTCGCTCTCGCGCGCAGcac‑‑aca                                                                                          >  2:63543/1‑148 (MQ=255)                                            aCTACGTGGTGGCCAAGCTGGTGCTGCCGAAAGAGCAGCAGCTGAGTCTGGCCAAGCGTTAAGCTGATCGGCGCTATCCGGTACCGGCCCCTTCGCGGGCACGCCCGCTCCCACAGGTAGCGCGTCGCTCTCGCGCGCAGCTC‑‑ACATAc                                                                                       <  6:184746/149‑1 (MQ=255)                                            aCTACGTGGTGGCCAAGCGGGTGCTGCCGAAAGAGCAGCAGCTGAGTCTGGCCAAGCGTTAAGCTGATCGGCGCTATCCGGTACCGGCCCCTTCGCGGGCACGCCCGCTCCCACAGGTAGCGCGTCGCTCTCGCGCGCAGCTC‑‑ACATAc                                                                                       <  1:241894/149‑1 (MQ=255)                                            aCTACGTGGTGGCCAAGCGGGTGCTGCCGAAAGAGCAGCAGCTGAGTCTGGCCAAGCGTTAAGCTGATCGGCGCTATCCGGTACCGGACCCTTCGCGGGCACGCCCGCTCCCACAGGTAGCGCGTCGCTCTCGCGCGCAGCTC‑‑ACATAc                                                                                       >  3:192412/1‑149 (MQ=255)                                                cGTGGTGGCCAAGCGGGTGCTGCCGAAAGAGCAGCAGCTGAGTCTGGCCAAGCGTTAAGCTGATCGGCGCTATCCGGTACCGGCCCCTTCGCGGGCACGCCCGCTCCCACAGGTAGCGCGTCGCTCTCGCGCGCAGCTC‑‑ACATACCtgt                                                                                   <  6:246922/149‑1 (MQ=255)                                                cGTGGTGGCCAAGCGGGTGCTGCCGAAAGAGCAGCAGCTGAGTCTGGCCAAGCGTTAAGCTGATCGGCGCTATCCGGTACCGGCCCCTTCGCGGGCACGCCCGCTCCCACAGGTAGCGCGTCGCTCTCGCGCGCAGCTC‑‑ACATACCtgt                                                                                   <  8:126412/149‑1 (MQ=255)                                                cGTGGTGGCCAAGCGGGTGCTGCCGAAAGAGCAGCAGCTGAGTCTGGCCAAGCGTTAAGCTGATCGGCGCTATCCGGTACCGGCCCCTTCGCGGGCACGCCCGCTCCCACAGGTAGCGCGTCGCTCTCGCGCGCAGCTC‑‑ACATACCtgt                                                                                   <  6:22808/149‑1 (MQ=255)                                                 gtggtgGCCAAGCGGGTGCTGCCGAAAGAGCAGCAGCTGAGTCTGGCCAAGCGTTAAGCTGATCGGCGCTATCCGGTACCGGCCCCTTCGCGGGCACGCCCGCTCCCACAGGTAGCGCGTCGCTCTCGCGCGCAGCTC‑‑ACATACCtgtg                                                                                  <  6:292728/149‑1 (MQ=255)                                                  gaggggatgctgacgatggagggggcgttgcggaggctgagggagcgagggttgatcaaaggcttgtagtacctgcaaaggccccttcgcgggcaCGCCCGCTCCCACAGGTAGCGCGTCGCTCTCGCGCGCAGCTC‑‑ACATACCTGTgg                                                                                 >  4:135252‑M1/96‑149 (MQ=255)                                                   ggtggCCAAGCGGGTGCTGCCGAAATAGCAGCAGCTGAGTCTGGCCAAGCGTTAAGCTGATCGGAGCTATCCGGTACAGGCCCCTTCGCGGGCACGCCCGCTCCCACAGGTAGCGCGTCGCTCTCGCGCGCAGCTA‑‑ACATACCTGTgg                                                                                 <  8:59515/148‑1 (MQ=255)                                                     ggtatgctgacgatggagggggctttgctgagtctgagggagcgagggttgatcaaaggcttgtagtacctgcaaaggccctttcgcgggcgCGCCCGCTCCCACAGGTAGCGCGTCGCTCTCGCGCGCAGCTC‑‑ACATACCTGTGGGa                                                                               >  6:16778‑M1/93‑148 (MQ=255)                                                       gCCAAGCGGGTGCTGCCGAAAGAGCAGCAGCTGAGTCTGGCCAAGCGTTAAGCTGATCGGCGCTATCCGGTACCGGCCCCTTCGCGGGCACGCCCGCTCCCACAGGTAGCGCGTCGCTCTCGCGCGCAGCTC‑‑ACATACCTGTGGGAGc                                                                             <  6:294005/148‑1 (MQ=255)                                                        ccAAGCGGGTGCTGCCGAAAGAGCAGCAGCTGAGTCTGGCCAAGCGTTAAGCTGATCGGCGCTATCCGGTACCGGCCCCTTCGCGGGCACGCCCGCTCCCACAGGTAGCGCGTCGCTCTCGCGCGCAGCTC‑‑ACATACCTGTGGGAGCgg                                                                           <  3:4125/149‑1 (MQ=255)                                                                              gcagcagcTGAGTCTGGCCAAGCGTTAAGCTGATCGGCGCTATCCGGTACCGGCCCCTTCGCGGGCACGCCCGCTCCCACAGCTAGCGCGTCGCTCTCGCGCGCAGCTC‑‑ACATACCTGTGGGAGCGGGCGCGCCCGCGAAAGGGCCttt                                                     <  5:124311/149‑1 (MQ=255)                                                                               cagcaacTGAGTCTGGCCAAGCGTTAAGCTGATCGGCGCTATCCGGTACCGGCCCCTTCGCGGGCCCGCCCGCTCCCACAGGTAGCGCGTCGCTCTAGCGCGCCGCTC‑‑ACCTACCGGTGGGAGCGGGCGCGCCCGCGAAAGGGCCTTTg                                                    >  8:216717/1‑149 (MQ=38)                                                                                agcagcTGAGTCTGGCCAAGCGTTAAGCTGATCGGCGCTATCCGGTACCGGCCCCTTCGCGGGCACGCCCGCTCCCACAGGTAGCGCGTCGCTCTCGCGCGCAGCTC‑‑ACATACCTGTGGGAGCGGGCGCGCCCGCGAAAGGGCCTTTGc                                                   <  6:156495/149‑1 (MQ=255)                                                                                 gcagcTGAGTCTGGCCAAGCGTTAAGCTGATCGGCGCTATCCGGTACCGGCCCCTTCGCGGGCACGCCCGCTCCCACAGGTAGCGCGTCGCTCTCGCGCGCAGCTC‑‑ACATACCTGTGGGAGCGGGCGCGCCCGCGAAAGGGCCTTTGCa                                                  <  4:192412/149‑1 (MQ=255)                                                                                 caagcTGTGTCGGGCCATGCGTTATGCTGACCGGCGCTATCCGGTACCGGCCCCTTCGCGGGCACGCCCGCTCCCACAGGTTGCGCGGCGCTCTCGCGCGCAGCTC‑‑ACATACCTGTGGGAGCGGGCGCGCCCGCGAAAGGGCCTTTGCa                                                  <  8:29709/147‑1 (MQ=37)                                                                                  cagcTGAGTCTGGCCAAGCGTTAAGCTGATCGGCGCTATCCGGTACCGGCCCCTTCGCGGGCACGCCCGCTCCCACAGGTAGCGCGTCGCTCTCGCGCGCAGCTC‑‑ACATACCTGTGGGAGCGGgc                                                                         >  4:112346/1‑125 (MQ=255)                                                                                  cagcTGAGTCTGGCCAAGCGTTAAGCTGATCGGCGCTATCCGGTACCGGCCCCTTCGCGGGCACGCCCGCTCCCACAGGTAGCGCGTCGCTCTCGCGCGCAGCTC‑‑ACATACCTGTGGGAGCGGgc                                                                         <  3:112346/125‑1 (MQ=255)                                                                                  cagcTGAGTCTGGCCAAGCGTTAAGCTGATCGGCGCTATCCGGTACCGGCCCCTTCGCGGGCACGCCCGCTCCCACAGGTAGCGCGTCGCTCTCGCGCGCAGCTC‑‑ACATACCTGTGGGAGCGGGCGCGCCCGCGAAAGGGCCTTTGCAg                                                 <  7:73962/149‑1 (MQ=255)                                                                                     cTGAGTCTGGCCATGCGTTACGCTGATCGGCGCTATCCGGTCCCGCCCCCTACGCGGCCCCGCCGGCTCCCACAGGTCGCGGGTCGCCCTCGCGCGCTGCCC‑‑ACATACCTGTGGTAGCGGGCGCGCCCGCGAAAGGGCCTTTGCAGGta                                              <  8:126806/149‑1 (MQ=255)                                                                                     cTGAGTCTGGCCAAGCGTTAAGCTGATCGGCGCTATCCGGTACCGGCCCCTTCGCGGGCACGCCCCCAACCACACGTAGCGCCTCGCTCACGCGCGCCGCTA‑‑ACAAACCAGTGGGAGCGGGCGCGCCCGCGAAAGGGCCATTGCAGGt                                               >  2:221825/1‑148 (MQ=255)                                                                                                          gCTGTTCGGGGCTATCCGGTACCGGCCCCTTCGCGGGCAAGCCCGCTCCCACAGGTAGGGGGTCGGTCTCGCGGGCATCTCAAAAATCCCTGTGGGAGCGGGCGCGCCCGCGAAAGGGCCTTTGCAGGTACTACAAGCCTTTGATCAAc                           <  1:93552/149‑1 (MQ=37)                                                                                                                 ttgtagtacctgcaaaggccctttcgcgggcgCGCCCGCTCCCACAGGTAGCGCGTCGCTCTCGCGCGCAGCTc‑‑ac                                                                                           >  4:169253‑M1/33‑76 (MQ=255)                                                                                                                 ttgtagtacctgcaaaggccctttcgcgggcgCGCCCGCTCCCACAGGTAGCGCGTCGCTCTCGCGCGCAGCTc‑‑ac                                                                                           <  3:169253‑M1/44‑1 (MQ=255)                                                                                                                     cTATCCGGTACCGGCCCCTTCGCGGGCACGCCCGCTCCCACAGGTAGCGCGTCGCTCTCGCGCGCAGCTC‑‑ACATACCTGTGGGAGCGGGCGCGCCCGCGAAAGGGCCTTTGCAGGTACTACAAGCCTTTGATCAACCCTCGCTCCCTCa              <  1:221825/149‑1 (MQ=255)                                                                                                                                 ggCCCCTTCGCGGGCACGCCCGCTCCCACCGGTAGCGCGTCGCTCTCGCGCGCAGCTC‑‑ACATACCTGTGGGAGCGGGCGCGCCCGCGAAAGGGCCTTTGCAGGTACTACAAGCCTTTGATCAACCCTCGCTCCCTCAGCCTCCGCAACg  <  8:153328/149‑1 (MQ=255)                                                                                                                                                 |                                                                                                                                       CGGGTGAGTATCGACACCTTGAGCAAGCCTTACTGGCAGAAGCACTACGTGGTGGCCAAGCGGGTGCTGCCGAAAGAGCAGCAGCTGAGTCTGGCCAAGCGTTAAGCTGATCGGCGCTATCCGGTACCGGCCCCTTCGCGGGCACGCCCGCTCCCACAGGTAGCGCGTCGCTCTCGCGCGCAGCTC‑‑ACATACCTGTGGGAGCGGGCGCGCCCGCGAAAGGGCCTTTGCAGGTACTACAAGCCTTTGATCAACCCTCGCTCCCTCAGCCTCCGCAACG  >  NC_002947/5816710‑5816986

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.