New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5816854 =	38 (0.730)	6 (0.130)	6/230	NT	19.1%	intergenic (+40/+89)	PP_5092/pilT	NLP/P60 protein/twitching motility protein
	?	NC_002947	5816917 =	18 (0.400)					intergenic (+103/+26)	PP_5092/pilT	NLP/P60 protein/twitching motility protein

GCAGCAGCTGAGTCTGGCCAAGCGTTAAGCTGATCGGCGCTATCCGGTACCGGCCCCTTCGCGGGCACGCCCGCTCCCACAGGTAGCGCGTCGCTCTCGCGCGCAGCTC‑‑ACATACCTGTGGGAGCGGGCGCGCCCGCGAAAGGGCCTTTGCAGGTACTACAAGCCTTTGATCAACCCTCGCTCCCTCAGCCTCCGCAACGCCCCCTCCATCGTCAGCATCCCCTCCGCCGCCCCGCCCTGCATCACTGAAGACAACTGCGCCAACCGCCCCTCCCGAA  >  NC_002947/5816787‑5817064                                                                                                                                     |                                                                                                                                                    gcagcagcTGAGTCTGGCCAAGCGTTAAGCTGATCGGCGCTATCCGGTACCGGCCCCTTCGCGGGCACGCCCGCTCCCACAGCTAGCGCGTCGCTCTCGCGCGCAGCTC‑‑ACATACCTGTGGGAGCGGGCGCGCCCGCGAAAGGGCCttt                                                                                                                                   <  5:124311/149‑1 (MQ=255)  cagcaacTGAGTCTGGCCAAGCGTTAAGCTGATCGGCGCTATCCGGTACCGGCCCCTTCGCGGGCCCGCCCGCTCCCACAGGTAGCGCGTCGCTCTAGCGCGCCGCTC‑‑ACCTACCGGTGGGAGCGGGCGCGCCCGCGAAAGGGCCTTTg                                                                                                                                  >  8:216717/1‑149 (MQ=38)   agcagcTGAGTCTGGCCAAGCGTTAAGCTGATCGGCGCTATCCGGTACCGGCCCCTTCGCGGGCACGCCCGCTCCCACAGGTAGCGCGTCGCTCTCGCGCGCAGCTC‑‑ACATACCTGTGGGAGCGGGCGCGCCCGCGAAAGGGCCTTTGc                                                                                                                                 <  6:156495/149‑1 (MQ=255)    gcagcTGAGTCTGGCCAAGCGTTAAGCTGATCGGCGCTATCCGGTACCGGCCCCTTCGCGGGCACGCCCGCTCCCACAGGTAGCGCGTCGCTCTCGCGCGCAGCTC‑‑ACATACCTGTGGGAGCGGGCGCGCCCGCGAAAGGGCCTTTGCa                                                                                                                                <  4:192412/149‑1 (MQ=255)    caagcTGTGTCGGGCCATGCGTTATGCTGACCGGCGCTATCCGGTACCGGCCCCTTCGCGGGCACGCCCGCTCCCACAGGTTGCGCGGCGCTCTCGCGCGCAGCTC‑‑ACATACCTGTGGGAGCGGGCGCGCCCGCGAAAGGGCCTTTGCa                                                                                                                                <  8:29709/147‑1 (MQ=37)     cagcTGAGTCTGGCCAAGCGTTAAGCTGATCGGCGCTATCCGGTACCGGCCCCTTCGCGGGCACGCCCGCTCCCACAGGTAGCGCGTCGCTCTCGCGCGCAGCTC‑‑ACATACCTGTGGGAGCGGGCGCGCCCGCGAAAGGGCCTTTGCAg                                                                                                                               <  7:73962/149‑1 (MQ=255)        cTGAGTCTGGCCATGCGTTACGCTGATCGGCGCTATCCGGTCCCGCCCCCTACGCGGCCCCGCCGGCTCCCACAGGTCGCGGGTCGCCCTCGCGCGCTGCCC‑‑ACATACCTGTGGTAGCGGGCGCGCCCGCGAAAGGGCCTTTGCAGGta                                                                                                                            <  8:126806/149‑1 (MQ=255)        cTGAGTCTGGCCAAGCGTTAAGCTGATCGGCGCTATCCGGTACCGGCCCCTTCGCGGGCACGCCCCCAACCACACGTAGCGCCTCGCTCACGCGCGCCGCTA‑‑ACAAACCAGTGGGAGCGGGCGCGCCCGCGAAAGGGCCATTGCAGGt                                                                                                                             >  2:221825/1‑148 (MQ=255)                             gCTGTTCGGGGCTATCCGGTACCGGCCCCTTCGCGGGCAAGCCCGCTCCCACAGGTAGGGGGTCGGTCTCGCGGGCATCTCAAAAATCCCTGTGGGAGCGGGCGCGCCCGCGAAAGGGCCTTTGCAGGTACTACAAGCCTTTGATCAAc                                                                                                         <  1:93552/149‑1 (MQ=37)                                        cTATCCGGTACCGGCCCCTTCGCGGGCACGCCCGCTCCCACAGGTAGCGCGTCGCTCTCGCGCGCAGCTC‑‑ACATACCTGTGGGAGCGGGCGCGCCCGCGAAAGGGCCTTTGCAGGTACTACAAGCCTTTGATCAACCCTCGCTCCCTCa                                                                                            <  1:221825/149‑1 (MQ=255)                                                    ggCCCCTTCGCGGGCACGCCCGCTCCCACCGGTAGCGCGTCGCTCTCGCGCGCAGCTC‑‑ACATACCTGTGGGAGCGGGCGCGCCCGCGAAAGGGCCTTTGCAGGTACTACAAGCCTTTGATCAACCCTCGCTCCCTCAGCCTCCGCAACg                                                                                <  8:153328/149‑1 (MQ=255)                                                                             tcccacaggtatgtgagctgcgcgcgagagcgacgcgctacctgtgggagcgggcgCGCCCGCGAAAGGGCCTTTGCAGGTACTACAAGCCTTTGATCAACCCTCGCTCCCTCAGACTCAGCAAAGCCCCCTCCATCGTCAGCATacc                                                          >  6:16778‑M2/57‑148 (MQ=255)                                                                               ccacaggtatgtgagctgcgcgcgagagcgacgcgctacctgtgggagcgggcgTGCCCGCGAAGGGGCCTTTGCAGGTACTACAAGCCTTTGATCAACCCTCGCTCCCTCAGCCTCCGCAACGCCCCCTCCATCGTCAGCATCCCCTc                                                       >  4:135252‑M2/55‑149 (MQ=255)                                                                               agcGGTAGCGCGTCGCTCTCGCGCGCAGCTC‑‑ACATACCTGTGGGAGCGGGCGCGCCCGCGATAGGGCCTTTGCAGGTACTACAAGCCTTTGATCAACCCTCGCTCCCTCAGCCTCCGCAACGCCCCCTCCATCGTCAGCATCCCCTccg                                                     >  7:185676‑M1/4‑149 (MQ=255)                                                                                   GTAGCGCGTCGCTCTCGCGCGCAGCTC‑‑ACATACCTGTGGGAGCGGGCGCGCCCGCGAAAGGGCCTTTGCAGGTACTACAAGCCTTTGATCAACCCTCGCTCCCTCAGCCTCCGCAACGCCCCCTCCATCGTCAGCATc                                                            >  8:32369‑M1/1‑138 (MQ=255)                                                                                   GTAGCGCGTCGCTCTCGCGCGCAGCTC‑‑ACATACCTGTGGGAGCGGGCGCGCCCGCGAAAGGGCCTTTGCAGGTACTACAAGCCTTTGATCAACCCTCGCTCCCTCAGCCTCCGCAACGCCCCCTCCATCGTCAGCATc                                                            <  7:32369‑M1/138‑1 (MQ=255)                                                                                      gcgcGTCGCTCTCGCGCGCAGCTC‑‑ACATACCTGTGGGAGCGGGCGCGCCCGCGAAAGGGCCTTTGCAGGTACTACAAGCCTTTGATCAACCCTCGCTCCCTCa                                                                                            >  7:162813/1‑103 (MQ=255)                                                                                      gcgcGTCGCTCTCGCGCGCAGCTC‑‑ACATACCTGTGGGAGCGGGCGCGCCCGCGAAAGGGCCTTTGCAGGTACTACAAGCCTTTGATCAACCCTCGCTCCCTCa                                                                                            <  8:162813/103‑1 (MQ=255)                                                                                         gtgagctgcgcgcgagagcgacgcgctacctgtgggagcgggcgCGCCCGCGAAAGGGCCTTTGCAGGTACTACaa                                                                                                                      >  4:169253‑M2/45‑76 (MQ=255)                                                                                         gtgagctgcgcgcgagagcgacgcgctacctgtgggagcgggcgCGCCCGCGAAAGGGCCTTTGCAGGTACTACaa                                                                                                                      <  3:169253‑M2/32‑1 (MQ=255)                                                                                           tCGCTCTCGCGCGCAGCTC‑‑ACATACCTGTGGGAGCGGGCGCGCCCGCGAAAGGGCCTTTGCAGGTACTACAAGCCTTTGATCAACCCTCGCTCCCTCAGCCTCCGCAACGCCCCCTCCATCGTCAGCATCCCCTCCGCCGCCCCGCCCt                                         <  7:11842/149‑1 (MQ=255)                                                                                                 tcGCGCGCAGCTC‑‑ACATACCTGTGGGAGCGGGCGCGCCCGCGAAAGGGCCTTTGCAGGTACTACAAGCCTTTGATCAACCCTCGCTCCCTCAGCCTCCGCAACGCCCCCTCCATCGTCAGCATCCCCTCCGCCGCCCCGCCCTGCATc                                    >  3:184260/1‑148 (MQ=255)                                                                                                    cgcgcAGCTC‑‑ACATACCTGTGGGAGCGGGCGCGCCCGCGAAAGGGCCTTTGCAGGTACTACAAGCCTTTGATCAACCCTCGCTCCCTCAGCCTCCGCAACGCCCCCTCCATCGTCAGCATCCCCTCCGCCGCCCCGCCCTGCATCACTg                                <  7:216717/149‑1 (MQ=255)                                                                                                      ggcAGCTC‑‑ACATACCTGGGGGAGCGGGCGCGCCCGCGAAAGGGCCTTTGCAGGTACTACAAGCCTTTGATCAACCCTCGCTCCCTCAGCCTCCGCAACGCCCCCTCCATCGTCAGCATCCCCTCCGGCGCCCCGCCCTGCATCACTGaa                              <  1:2422/148‑1 (MQ=255)                                                                                                      cgcAGCTC‑‑ACATACCTGTGGGAGCGGGCGCGCCCGCGAAAGGGCCTTTGCAGGTACTACAAGCCTTTGATCAACCCTCGCTCCCTCAGCCTCCGCAACGCCCCCTTCATCGTCAGCATCCCCTCCGCCGCCCCGCCCTGCATCACTGaa                              <  1:63543/149‑1 (MQ=255)                                                                                                       agagcgacgcgctacctgtgggagctggcgCGCCCGCGAAAGGGCCTTTGCAGGTACTACAAGCCTTTGATCAACCCTCGCTCCCTCAGCCTCCGCAACGCCCCCTCCATCGTCAGCATCCCCTCCGCCGCCCCGCCCTGCATCACTGa                               <  5:16778‑M2/119‑1 (MQ=255)                                                                                                          gcgacgcgctacctgtgggagcgggcgTGCCCGCGAAGGGGCCTTTGCAGGTACTACAAGCCTTTGATCAACCCTCGCTCCCTCAGCCTCCGCAACGCCCCCTCCATCGTCAGCATCCCCTCCGCCGCCCCGCCCTGCATCACTGAAGa                            <  3:135252‑M2/122‑1 (MQ=255)                                                                                                                       tgtgggagcgggcgCGCCCGCGAAAGGGCCTTTGCAGGTACTACAAGCCTTTGATCAACCCTCGCTCCCTCAGCCTCCGCAACGCCCCCTCCATCGTCAGCATCCCCGGCGCCGGCCCGGCCGGGCTCACGGCAGCCCACAGCGCCCAc               >  3:286089‑M2/15‑149 (MQ=255)                                                                                                                              gcggtcgCGCCCGCGAAAGTGCCTTTGCAGGTACTACAAGCCTTTGATCAACCCTCGCTCCCTCAGCCTCCGCAACGCCCCCTCCATCGTCAGCATCCCCTCCGCCGCCCCGCCCTGCATCACTGAAGACAACTGCGCCAACCGcccc         <  7:10352‑M2/141‑1 (MQ=255)                                                                                                                                    gcgcCCGCGAAAGGGCCTTTGCAGGTACTACAATCCTTTGATAAACCCTCGCTCCCTCAGCCTCCGCAACTCCACCTCCAAATGCAGCATCACATCAGGCGCCCCCCACTGGAAGACTGAACACAACATCCGCACCCGccccaaccacg  >  8:121578/1‑142 (MQ=255)                                                                                                                                     |                                                                                                                                                    GCAGCAGCTGAGTCTGGCCAAGCGTTAAGCTGATCGGCGCTATCCGGTACCGGCCCCTTCGCGGGCACGCCCGCTCCCACAGGTAGCGCGTCGCTCTCGCGCGCAGCTC‑‑ACATACCTGTGGGAGCGGGCGCGCCCGCGAAAGGGCCTTTGCAGGTACTACAAGCCTTTGATCAACCCTCGCTCCCTCAGCCTCCGCAACGCCCCCTCCATCGTCAGCATCCCCTCCGCCGCCCCGCCCTGCATCACTGAAGACAACTGCGCCAACCGCCCCTCCCGAA  >  NC_002947/5816787‑5817064

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.