New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5866389 =	42 (0.810)	4 (0.080)	4/244	NT	8.0%	coding (156/444 nt)	PP_5140	MerR family transcriptional regulator
	?	NC_002947	5866470 =	54 (1.130)					coding (237/444 nt)	PP_5140	MerR family transcriptional regulator

TCGGAGAACTGGCCAAAGCCACCGACTGCGCGGTGGAAACCATCCGCTACTACGAGCGTGAAAACCTGCTGCCAGAGCCGGCGCGCAGCGAGGGCAACTACCGGTTGTACACCCAGGCCCATGTGGAGCGGCTGACCTTCATCCGCAACTGCCGCACGCTGGACATGACCCTGGACGAAATTCGCAGCCTGCTACGCCTGCGCGACAGCCCCGACGACGCGT‑GCGGCAGCGTCAATGCGCTGATCGACGAGCATATCGAGCATGTTCAGGCGCGGATCGATGGCTTGGTGGCATTG  >  NC_002947/5866241‑5866536                                                                                                                                                     |                                                                                                                                                     gtttgtctccagttgctgcaagatcgcgcattcactcccctgcgcgttgcagcgccgccgcagctccaccagctgctcctgcaatgccaccaagccatcgatccgcgcctgaacatgctcgatatgctcgtcgatcagcgcattgacgc                                                                                                                                                      <  5:71895‑M1/1‑1 (MQ=255)    tgtctccagttgctgcaagatcgcgcattcactcccctgcgcgttgcagcgccgccgcagctccaccagctgctcctgcaatgccaccaagccatcgatccgcgcctgaacatgctcgatatgctcgtcgatcagcgcattgacgCTg                                                                                                                                                    >  1:169460‑M1/146‑148 (MQ=255)    gagaACTGGCCAAAGCCACCGACTGCGCGGTGGAAACCATCCGCTACTACGAGCGTGAAAACCTGCTGCCAGAGCCGGCGCGCAGCGAGGGCAACTACCGGTTGTACACCCAGGCCCATGTGGAGCGGCTGACCTTCATCCGCAACTGc                                                                                                                                                   >  3:169890/1‑149 (MQ=255)      tctccagttgctgcaagatcgcgcattcactcccctgcgcgttgcagcgccgccgcagctccaccagctgctcctgcaatgccaccaagccatcgatccgcgcctgaacatgctcgatatgctcgtcgatcagcgcattgacgCTGCCg                                                                                                                                                 <  2:123064‑M1/6‑1 (MQ=255)                     aCCGACTGCGCGGTGGAAACCATCCGCTACTACGAGCGTGAAAACCTGCTGCCAGAGCCGGCGCGCAGCGAGGGCAACTACCGGTTGTACACCCAGGCCCATGTGGAGCGGCTGACCTTCATCCGCAACTGCCGCACGCTGGACATGAc                                                                                                                                  <  3:17660/149‑1 (MQ=255)                        gACTGCGCGGTGGAAACCATCCGCTACTACGAGCGTGAAAACCTGCTGCCAGAGCCGGCGCGCAGCGAGGGCAACTACCGGTTGTACACCCAGGCCCATGTGGAGCGGCTGACCTTCATCCGCAACTGCCGCACGCTGGACATGACCCt                                                                                                                               <  7:10899/149‑1 (MQ=255)                          cTGCGCGGTGGAAACCATCCGCTACTACGAGCGTGAAAACCTGCTGCCAGAGCCGGCGCGCAGCGAGGGCAACTACCGGTTGTACACCCAGGCCCATGTGGAGCGGCTGACCTTCATCCGCAACTGCCGCACGCTGGACATGACCCTgg                                                                                                                             <  6:165645/149‑1 (MQ=255)                                ggTGGAAACCATCCGCTACTACGAGCGTGAAAACCTGCTGCCAGAGCCGGCGCGCAGCGAGGGCAACTACCGGTTGTACACCCAGGCCCATGTGGAGCGGCTGACCTTCATCCGCAACTGCCGCACGCTGGACATGACCCTGGACGaaa                                                                                                                       >  7:32867/1‑149 (MQ=255)                                    tcccctgcgcgttgcagcgccgccgcagctccaccagctgctcctgcaatgccaccacgccatcgatccgcgcctgcacctgctcgatatgctcgtcgatcagcgcattgacgCTGCCGCCCGCTGGACCTGACCCTGGACGAAATTCg                                                                                                                   <  5:90837‑M1/36‑1 (MQ=255)                                    gAAACCATCCGCTACTACGAGCGTGAAAACCTGCTGCCAGAGCCGGCGCGCAGCGAGGGCAACTACCGGTTGTACACCCAGGCCCATGTGGAGCGGCTGACCTTCATCCGCAACTGCCGCACGCTGGACATGACCCTGGACGAAATTc                                                                                                                    <  5:233343/148‑1 (MQ=255)                                      aaCCATCCGCTACTACGAGCGTGAAAACCTGCTGCCAGAGCCGGCGCGCAGCGAGGGCAACTACCGGTTGTACACCCAGGCCCATGTGGAGCGGCTGACCTTCATCCGCAACTGCCGCACGCTGGACATGACCCTGGACGAAATTCGCa                                                                                                                 <  4:304216/149‑1 (MQ=255)                                      aaCCATCCGCTACTACGAGCGTGAAAACCTGCTGCCAGAGCCGGCGCGCAGCGAGGGCAACTACCGGTTGTACACCCAGGCCCATGTGGAGCGGCTGACCTTCATCCGCAACTGCCGCACGCTGGACATGACCCTGGACGAAATTCGCa                                                                                                                 <  7:187340/149‑1 (MQ=255)                                              gttgcagcgccgccgcagctccaccagctgctcctgcaatgccaccaagccatcgatccgcgcctgaacatgctcgatatgctcgtcgatcagcgcattgacgCTGCCGCACGCTGGACATGACCCTGGACGAAATTCGCAGCCTGCTa                                                                                                         <  2:154866‑M1/46‑1 (MQ=255)                                              gCTACTACGAGCGTGAAAACCTGCTGCCAGAGCCGGCGCGCAGCGAGGGCAACTACCGGTTGTACACCCAGGCCCATGTGGAGCGGCTGACCTTCATCCGCAACTGCCGCACGCTGGACATGACCCTGGACGAAATTCGCAGCCTg                                                                                                            <  4:56182/146‑1 (MQ=255)                                              gCTACTACGAGCGTGAAAACCTGCTGCCAGAGCCGGCGCGCAGCGAGGGCAACTACCGGTTGTACACCCAGGCCCATGTGGAGCGGCTGACCTTCATCCGCAACTGCCGCACGCTGGACATGACCCTGGACGAAATTCGCAGCCTg                                                                                                            >  3:56182/1‑146 (MQ=255)                                              gCTACTACGAGCGTGAAAACCTGCTGCCAGAGCCGGCGCGCAGCGAGGGCAACTACCGGTTGTACACCCAGGCCCATGTGGAGCGGCTGACCTTCATCCGCAACTGCCGCACGCTGGACATGACCCTGGACGAAATTCGCAGCCTGCTa                                                                                                         >  7:302253/1‑149 (MQ=255)                                               ctactaCGAGCGTGAAAACCTGCTGCCAGAGCCGGCGCGCAGCGAGGGCAACTACCGGTTGTACACCCAGGCCCATGTGGAGCGGCTGACCTTCATCCGCAACTGCCGCACGCTGGACATGACCCTGGACGAAATTCGCAGCCTGCTAc                                                                                                        <  8:32867/149‑1 (MQ=255)                                                           tGAAAACCTGCTGCCAGAGCCGGCGCGCAGCGAGGGCAACTACCGGTTGTACACCCAGGCCCATGTGGAGCGGCTGACCTTCATCCGCAACTGCCGCACGCTGGACATGACCCTGGACGAAATTCGCAGCCTGCTACGCCTGCGCGa                                                                                              >  2:296883/1‑147 (MQ=255)                                                                       gcCAGAGCCGGCGCGCAGCGAGGGCAACTACCGGTTGTACACCCAGGCCCATGTGGAGCGGCTGACCTTCATCCGCAACTGCCGCACGCTGGACATGACCCTGGACGAAATTCGCAGCCTGCTACGCCTGCGCGACAGCCCCGacgacg                                                                                >  4:312388/1‑149 (MQ=255)                                                                        ccAGAGCCGGCGCGCAGCGAGGGCAACTACCGGTTGTACACCCAGGCCCATGTGGAGCGGCTGACCTTCATCCGCAACTGCCGCACGCTGGACATGACCCTGGACGAAATTCGCAGCCTGCTACGCCTGCGCGACAGCCCCGACGAcgc                                                                               <  1:65333/149‑1 (MQ=255)                                                                        ccAGAGCCGGCGCGCAGCGAGGGCAACTACCGGTTGTACACCCAGGCCCATGTGGAGCGGCTGACCTTCATCCGCAACTGCCGCACGCTGGACATGACCCTGGACGAAATTCGCAGCCTGCTACGCCTGCGCGACAGCCCCGACGAcgc                                                                               >  1:36085/1‑149 (MQ=255)                                                                        ccAGAGCCGGCGCGCAGCGAGGGCAACTACCGGTTGTACACCCAGGCCCATGTGGAGCGGCTGACCTTCATCCGCAACTGCCGCACGCTGGACATGACCCTGGACGAAATTCGCAGCCTGCTACGCCTGCGCGACAGCCCCGACGAcgc                                                                               >  2:230836/1‑149 (MQ=255)                                                                         cAGAGCCGGAGCGCAGCGAGGGCAACTACCGGTTGTACACCCAGGCCAATGTGGAGCGGCTGAACTTCATCCGCAACTGCCGCACGCTGGACATGACACTGGACGAAATTCGCAGCCTGCTACGCCTGCGCGACAGCACCGACGAcgcg                                                                              >  7:216367/1‑149 (MQ=255)                                                                            ctcctgcaatgccaccaagccatcgatccgcgcctgaacatgctcgatatgctcggcgatcagcgcattgacgCTGCCGCACGCTGGACATGACCCTGGACGAAATTCGCAGCCTGCTACGCCTGCGCGACAGCCCCGACCACGCGt                                                                             >  6:90837‑M1/74‑147 (MQ=255)                                                                              ccGGCGCGCAGCGAGGGCAACTACCGGTTGTACACCCAGGCCCATGTGGAGCGGCTGACCTTCATCCGCAACTGCCGCACGCTGGACATGACCCTGGACGAAATTCGCAGCCTGCTACGCCTGCGCGACAGCCCCGACGACGCGT‑GCgg                                                                        >  8:36708/1‑149 (MQ=255)                                                                              ccGGCGCGCAGCGAGGGCAACTACCGGTTGTACACCCAGGCCCATGTGGAGCGGCTGACCTTCATCCGCAACTGCCGCACGCTGGACATGACCCTGGACGAAATTCGCAGCCTGCTACGCCTGCGCGACAGCCCCGACGACGCGT‑GCgg                                                                        >  8:19206/1‑149 (MQ=255)                                                                                  cgcgcAGCGAGGGCAACTACCGGTTGTACACCCAGGCCCATGTGGAGCGGCTGACCTTCATCCGCAACTGCCGCACGCTGGACATGACCCTGGACGAAATTCGCAGCCTGCTACGCCTGCGCGACAGCCCCGACGACGCGT‑GCGGCAGc                                                                    <  4:169890/149‑1 (MQ=255)                                                                                  cgcgcAGCGAGGGCAACTACCGGTTGTACACCCAGGCCCATGTGGAGCGGCTGACCTTCATCCGCAACTGCCGCACGCTGGACATGACCCTGGACGAAATTCGCAGCCTGCTACGCCTGCGCGACAGCCCCGACGACGCGT‑GCGGCAGc                                                                    <  1:296883/149‑1 (MQ=255)                                                                                  caatgccaccaagccatcgatccgcgcctgaacatgctcgatatgctcgtcgatcagcgcattgacgCTGCCGCACGCTGGACATGACCCTGGACGAAATTCGCAGCCTGCTACGCCTGCGCGACAGCCCCGACGACGCGT‑GCGGCa                                                                      >  1:154866‑M1/68‑147 (MQ=255)                                                                                   gcgcAGCGAGGGCAACTACCGGTTGTACACCCAGTCACATGTGGAGCGGATGACCTTCATCCGCAACTGCCGCACGCTGGACATGACCCTGGACGAAATTCGCAGCCAGCTACGCCTGCGCGACAGCCACGACCACGCGT‑GAGGCAGc                                                                    >  2:1580/1‑148 (MQ=255)                                                                                      cAGCGAGGGCAACTACCGGTTGTACACCCAGGCCCATGTGGAGCGGCTGACCTTCATCCGCAACTGCCGCACGCTGGACATGACCCTGGACGAAATTCGCAGCCTGCTACGCCTGCGCGACAGCCCCGACGACGCGT‑GCGGCAGCGTc                                                                 >  5:1030/1‑148 (MQ=255)                                                                                        gCGAGGGCAACTACCGGTTGTACACCCAGGCCCATGTGGAGCGGCTGACCTTCATCCGCAACTGCCGCACGCTGGACATGACCCTGGACGAAATTCGCAGCCTGCTACGCCTGCGCGACAGCCCCGACGACGCGT‑GCGGCAGCGTCAAt                                                              >  1:73509/1‑149 (MQ=255)                                                                                           aGGGCAACTACCGGTTGTACACCCAGGCCCATGTGGAGCGGCTGACCTTCATCCGCAACTGCCGCACGCTGGACATGACCCTGGACGAAATTCGCAGCCTGCTACGCCTGCGCGACAGCCCCGACGACGCGT‑GCGGCAGCGTCAATgcg                                                           <  2:134742/149‑1 (MQ=255)                                                                                            gggCAACTACCGGTTGTACACCCAGGCCCATGTGGAGCGGCTGACCTTCATCCGCAACTGCCGCACGCTGGACATGACCCTGGACGAAATTCGCAGCCTGCTACGCCTGCGCGACAGCCCCGACGACGCGT‑GCGGCAGCGTCAATgcgc                                                          <  8:248182/149‑1 (MQ=255)                                                                                               cAACTACCGGTTGTACACCCAGGCCCATGTGGAGCGGCTGACCTTCATCCGCAACTGCCGCACGCTGGACATGACCCTGGACGAAATTCGCAGCCTGCTACGCCTGCGCGACAGCCCCGACGACGCGt                                                                             >  4:286990/1‑128 (MQ=255)                                                                                               cAACTACCGGTTGTACACCCAGGCCCATGTGGAGCGGCTGACCTTCATCCGCAACTGCCGCACGCTGGACATGACCCTGGACGAAATTCGCAGCCTGCTACGCCTGCGCGACAGCCCCGACGACGCGt                                                                             <  3:286990/128‑1 (MQ=255)                                                                                               cAACTACCGGTTGTACACCCAGGCCCATGTGGAGCGGCTGACCTTCATCCGCAACTGCCGCACGCTGGACATGACCCTGGACGAAATTCGCAGCCTGCTACGCCTGCGCGACAGCCCCGACGACGCGT‑GCGGCAGCGTCAATGCGCTGa                                                       >  2:85082/1‑149 (MQ=255)                                                                                                aaCTACCGGTTGTACACCCAGGCCCATGTGGAGCGGCTGACCTTCATCCGCAACTGCCGCACGCTGGACATGACCCTGGACGAAATTCGCAGCCTGCTACGCCTGCGCGACAGCCCCGACGACGCGT‑GCGGCAGCGTCAATgcgc                                                          >  7:45511/1‑145 (MQ=255)                                                                                                aaCTACCGGTTGTACACCCAGGCCCATGTGGAGCGGCTGACCTTCATCCGCAACTGCCGCACGCTGGACATGACCCTGGACGAAATTCGCAGCCTGCTACGCCTGCGCGACAGCCCCGACGACGCGT‑GCGGCAGCGTCAATgcgc                                                          <  8:45511/145‑1 (MQ=255)                                                                                                        gTTGTACACCCAGGCCCATGTGGAGCGGCTGACCTTCATCCGCAACTGCCGCACGCTGGACATGACCCTGGACGAAATTCGCAGCCTGCTACGCCTGCGCGACAGCCCCGACGACGCGT‑GCGGCAGCGTCAATGCGCTGATCGACGAGc                                              <  7:19206/149‑1 (MQ=255)                                                                                                               acCCAGGCCCATGTGGAGCGGCTGACCTTCATCCGCAACTGCCGCACGCTGGACATGACCCTGGACGAAATTCGCAGCCTGCTACGCCTGCGCGACAGCCCCGACGACGCGT‑GCGGCAGCGTCAATGCGCTGATCGACGAGCATATc                                         >  3:293173/1‑147 (MQ=255)                                                                                                                 ccAGGCCCATGTGGAGCGGCTGACCTTCATCCGCAACTGCCGCACGCTGGACATGACCCTGGACGAAATTCGCAGCCTGCTACGCCTGCGCGACAGCCCCGACGACGCGT‑GCGGCAGCGTCAATGCGCTGATCGACGAGCATATCGAg                                      >  4:284099/1‑148 (MQ=255)                                                                                                                              gAGCGGCTGACCTTCATCCGCAACTGCCGCACGCTGGACATGACCCTGGACGAAATTCGCAGCCTGCTACGCCTGCGCGACAGCCCCGACGACGCGT‑GCGGCAGCGTCAATGCGCTGATCGACGAGCATATCGAGCATGTTCAGgcgc                         <  5:91492/148‑1 (MQ=255)                                                                                                                                gCGGCTGACCTTCATCCGCAACTGCCGCACGCTGGACATGACCCTGGACGAAATTCGCAGCCTGCTACGCCTGCGCGACAGCCCCGACGACGCGT‑GCGGCAGCGTCAATGCGCTGATCGACGAGCATATCGAGc                                     >  6:165370/1‑134 (MQ=255)                                                                                                                                gCGGCTGACCTTCATCCGCAACTGCCGCACGCTGGACATGACCCTGGACGAAATTCGCAGCCTGCTACGCCTGCGCGACAGCCCCGACGACGCGT‑GCGGCAGCGTCAATGCGCTGATCGACGAGCATATCGAGc                                     <  5:165370/134‑1 (MQ=255)                                                                                                                                 cGGCTGACCTTCATCCGCAACTGCCGCACGCTGGACATGACCCTGGACGAAATTCGCAGCCTGCTACGCCTGCGCGACAGCCCCGACGACGCGTCGCGGCAGCGTCAATGCGCTGATCGACGAGCATATCGAGCATGTTCAGGCGCGGa                      <  1:85082/149‑1 (MQ=255)                                                                                                                                         cTTCATCCGCAACTGCCGCACGCTGGACATGACCCTGGACGAAATTCGCAGCCTGCTACGCCTGCGCGACAGCCCCGACGACGCGT‑GCGGCAGCGTCAATGCGCTGATCGACGAg                                               <  4:91648/115‑1 (MQ=255)                                                                                                                                         cTTCATCCGCAACTGCCGCACGCTGGACATGACCCTGGACGAAATTCGCAGCCTGCTACGCCTGCGCGACAGCCCCGACGACGCGT‑GCGGCAGCGTCAATGCGCTGATCGACGAg                                               >  3:91648/1‑115 (MQ=255)                                                                                                                                          ttCATCCGCAACTGCCGCACGCTGGACATGACCCTGGACGAAATTCGCAGCCTGCTACGCCTGCGCGACAGCCCCGACGACGCGT‑GCCGCAGCGTCAATGCGCTGATCGACGAGCATATCGAGCATGTTCAGGCGCGGATCGATGGCtt            >  4:190642/1‑149 (MQ=255)                                                                                                                                              tCCGCAACTGCCGCACGCTGGACATGACCCTGGACGAAATTCGCAGCCTGCTACGCCTGCGCGACAGCCCCGACGACGCGT‑GCGGCAGCGTCAATGCGCTGATCGACGAGCATATCGAGCATGTTCAGGCGCGGATCGATGGCTtggtg        >  4:218079/1‑149 (MQ=255)                                                                                                                                                    aCTGCCGCACGCTGGACATGACCCTGGACGAAATTCGCAGCCTGCTACGCCTGCGCGACAGCCCCGACGACGCGT‑GCGGCAGCGTCAATGCGCTGATCGACGAGCATATCGAGCATGTTCAGGCGCGGATCGATGGCTTGGTGGCATTg  >  7:178882/1‑149 (MQ=255)                                                                                                                                                     |                                                                                                                                                     TCGGAGAACTGGCCAAAGCCACCGACTGCGCGGTGGAAACCATCCGCTACTACGAGCGTGAAAACCTGCTGCCAGAGCCGGCGCGCAGCGAGGGCAACTACCGGTTGTACACCCAGGCCCATGTGGAGCGGCTGACCTTCATCCGCAACTGCCGCACGCTGGACATGACCCTGGACGAAATTCGCAGCCTGCTACGCCTGCGCGACAGCCCCGACGACGCGT‑GCGGCAGCGTCAATGCGCTGATCGACGAGCATATCGAGCATGTTCAGGCGCGGATCGATGGCTTGGTGGCATTG  >  NC_002947/5866241‑5866536

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.