New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5910077	41 (0.790)	4 (0.080)	4/252	NT	9.5%	coding (674/1362 nt)	spuC‑II	polyamine:pyruvate transaminase
	?	NC_002947	= 5910097	37 (0.750)					coding (654/1362 nt)	spuC‑II	polyamine:pyruvate transaminase

GAACCACTCGCCGGTACGGCCGAAGCCGCAGATCACCTCGTCGGCGACGAACAGGATGTCGTACCTGGCGAGGATCTC‑CTTCACCTTCGGCCAGTAGGTTTCCGGCGGGATGATCACGCCACCAGCGCCCTGGATCGGCTCGGCGATGAAGGCCGCGACGTTGTCTTCGCCGACTTCGAGGATCTTCTT‑CTCCAACTGCTCGGCGGCCCAGACACCGAATTCGTCAGGGGTCATGTCGCCTCCCTCGCCGAACCAGTACGGCTGAGGGATGTGCACGATGCCCGGGATCGG  >  NC_002947/5909932‑5910222                                                                                                                                                   |                                                                                                                                                   gAACCACTCGCCGGTACGGCCGAAGCCGCAGATCACCTCGTCGGCGACGAACAGGATGTCGTACCTGGCGAGGATCTC‑CTTCACCTTCGGCCAGTAGGTTTCCGGCGGGATGATCACGCCACCAGCGCCCTGGATCGGCTCGGCGATGa                                                                                                                                                 <  3:154758/149‑1 (MQ=255)  aaCTACTCGCCGGTACGGCCGAAGCCGCAGATCACCTCGTCGGCGACGAACAGGATGTCGTACCTGGCGAGGATCTC‑CTTCACCTTCGGCCAGTAGGTTTCCGGCGGGATGATCACGCCACCAGCGCCCTGGATCGGCTCGGCGATg                                                                                                                                                  >  5:274161/1‑147 (MQ=255)   aCCACTCGCCGGTACGGCCGAAGCCGCAGATCACCTCGTCGGCGACGAACAGGATGTCGTACCTGGCGAGGATCTC‑CTTCACCTTCGGCCAGTAGGTTTCCGGCGGGATGATCACGCCACCAGCGCCCTGGATCGGCTCGGCGATGAAg                                                                                                                                               <  8:226563/149‑1 (MQ=255)     cACTCGCCGGTACGGCCGAAGCCGCAGATCACCTCGTCGGCGACGAACAGGATGTCGTACCTGGCGAGGATCTC‑CTTCACCTTCGGCCAGTAGGTTTCCGGCGGGATGATCACGCCACCAGCGCCCTGGATCGGCTCGGCGATGAAGGc                                                                                                                                             <  4:242875/149‑1 (MQ=255)        tCGCCGGTACGGCCGAAGCCGCAGATCACCTCGTCGGCGACGAACAGGATGTCGTACCTGGCGAGGATCTC‑CTTCACCTTCGGCCAGTAGGTTTCCGGCGGGATGATCACGCCACCAGCGCCCTGGATCGGCTCGGCGATGAAGGCcgc                                                                                                                                          >  8:154998/1‑149 (MQ=255)        tCGCCGGTACGGCCGAAGCCGCAGATCACCTCGTCGGCGACGAACAGGATGTCGTACCTGGCGAGGATCTC‑CTTCACCTTCGGCCAGTAGGTTTCCGGCGGGATGATCACGCCACCAGCGCCCTGGAACGGCTCGGCGATGAAGGCcgc                                                                                                                                          >  8:251579/1‑149 (MQ=255)          gCCGGTACGGCCGAAGCCGCAGATCACCTCGTCGGCGACGAACAGGATGTCGTACCTGGCGAGGATCTC‑CTTCACCTTCGGCCAGTAGGTTTCCGGCGGGATGATCACGCCACCAGCGCCCTGGATCGGCTCGGCGATGAAGGCCGCGa                                                                                                                                        <  1:134317/149‑1 (MQ=255)          gCCGGTACGGCCGAAGCCGCAGATCACCTCGTCGGCGACGAACAGGATGTCGTACCTGGCGAGGATCTC‑CTTCACCTTCGGCCAGTAGGTTTCCGGCGGGATGATCACGCCACCAGCGCCCTGGATCGGCTCGGCGATGAAGGCCGCGa                                                                                                                                        >  5:276991/1‑149 (MQ=255)            cGGTACGGCCGAAGCCGCAGATCACCTCGTCGGCGACGAACAGGATGTCGTACCTGGCGAGGATCTC‑CTTCACCTTCGGCCAGTAGGTTTCCGGCGGGATGATCACGCCACCAGCGCCCTGGATCGGCTCGGCGATGAAGGCCGCGACg                                                                                                                                      <  6:274161/149‑1 (MQ=255)                  ggCCGAAGCCGCAGATCACCTCGTCGGCGACGAACAGGATGTCGTACCTGGCGAGGATCTC‑CTTCACCTTCGGCCAGTAGGTTTCCGGCGGGATGATCACGCCACCAGCGCCCTGGATCGGCTCGGCGATGAAGGCCGCGACGTTGTCt                                                                                                                                <  7:154998/149‑1 (MQ=255)                  ggCCGAAGCCGCAGATCACCTCGTCGGCGACGAACAGGATGTCGTACCTGGCGAGGATCTC‑CTTCACCTTCGGCCAGTAGGTTTCCGGCGGGATGATCACGCCACCAGCGCCCTGGATCGGCTCGGCGATGAAGGCCGCGACGTTGTCt                                                                                                                                >  1:15331/1‑149 (MQ=255)                    ccGAAGCCGCAGATCACCTCGTCGGCGACGAACAGGATGTCGTACCTGGCGAGGATCTC‑CTTCACCTTCGGCCAGTAGGTTTCCGGCGGGATGATCACGCCACCAGCGCCCTGGATCGGCTCGGCGATGAAg                                                                                                                                               <  2:140404/132‑1 (MQ=255)                     cGAAGCCGCAGATCACCTCGTCGGCGACGAACAGGATGTCGTACCTGGCGAGGATCTC‑CTTCACCTTCGGCCAGTAGGTTTCCGGCGGGATGATCACGCCACCAGCGCCCTGGATCGGCTCGGCGATGAAGGCCGCGACGTTGTCTtcg                                                                                                                             <  2:226683‑M2/149‑4 (MQ=255)                               gATCACCTCGTCGGCGACGAACAGGATGTCGTACCTGGCGAGGATCTC‑CTTCACCTTCGGCCAGTAGGTTTCCGGCGGGATGATCACGCCACCAGCGCCCTGGATCGGCTCGGCGATGAAGGCCGCGACGTTGTCTTCGCCGACTTCGa                                                                                                                   <  6:276991/149‑1 (MQ=255)                                   aCCTCGTCGGCGACGAACAGGATGTCGTACCTGGCGAGGATCTC‑CTTCACCTTCGGCCAGTAGGTTTCCGGCGGGATGATCACGCCACCAGCGCCCTGGATCGGCTCGGCGATGAAGGCCGCGACGTTGTCTTCGCCGACTTCGAGGAt                                                                                                               <  7:141399/149‑1 (MQ=255)                                    ccTCGTCGGCGACGAACAGGATGTCGTACCTGGCGAGGATCTCGCTTCACCTTCGGCCAGTAGGTTTCCGGCGGGATGATCACGCCACCAGCGCCCTGGATCGGCTCGGCGATGAAGGCCGCGACGTTGTCTTAGCCGCCTTCGAGGa                                                                                                                >  1:226116/1‑148 (MQ=255)                                    ccTCGTCGGCGACGAACAGGATGTCGTACCTGGCGAGGATCTC‑CTTCACCTTCGGCCAGTAGGTTTCCGGCGGGATGATCACGCCACCAGCGCCCTGGATCGGCTCGGCGATGAAGGCCGCGACGTTGTCTTCGCCGACTTCGAGGAtc                                                                                                              >  8:259545/1‑149 (MQ=255)                                        gtcgGCGACGAACAGGATGTCGTACCTGGCGAGGATCTC‑CTTCACCTTCGGCCAGTAGGTTTCCGGCGGGATGATCACGCCACCAGCGCCCTGGATCGGCTCGGCGATGAAGGCCGCGACGTTGTCTTCGCCGACTTCGAGGAtcttc                                                                                                           <  6:231652/148‑1 (MQ=255)                                            tcgacgaACAGGATGTCGTACCTGGCGAGGATCTC‑CTTCACCTTCGGCCAGTAGGTTTCCGGCGGGATGATCACGCCACCAGCGCCCTGGATCGGCTCGGCGATGAAGGCCGCGACGTTGTCTTCGCCGACTTCGAGGATCTTCTt‑ctc                                                                                                     >  8:21134/2‑149 (MQ=255)                                             cgacgaACAGGATGTCGTACCTGGCGAGGATCTC‑CTTCACCTTCGGCCAGTAGGTTTCCGGCGGGATGATCACGCCACCAGCGCCCTGGATCGGCTCGGCGATGAAGGCCGCGACGTTGTCTTCGCCGACTTCGAGGAtcttctt‑c                                                                                                       >  5:47802/1‑146 (MQ=255)                                             cgacgaACAGGATGTCGTACCTGGCGAGGATCTC‑CTTCACCTTCGGCCAGTAGGTTTCCGGCGGGATGATCACGCCACCAGCGCCCTGGATCGGCTCGGCGATGAAGGCCGCGACGTTGTCTTCGCCGACTTCGAGGAtcttctt‑c                                                                                                       <  6:47802/146‑1 (MQ=255)                                                  aaCAGGATGTCGTACCTGGCGAGGATCTC‑CTTCACCTTCGGCCAGTAGGTTTCCGGCGGGATGATCACGCCACCAGCGCCCTGGATCGGCTCGGCGAagacaacgtcgcggccttcatcgccgag                                                                                                                        >  8:37145‑M1/1‑97 (MQ=255)                                                  aaCAGGATGTCGTACCTGGCGAGGATCTC‑CTTCACCTTCGGCCAGTAGGTTTCCGGCGGGATGATCACGCCACCAGCGCCCTGGATCGGCTCGGCGAagacaacgtcgcggccttcatcgccgag                                                                                                                        <  7:37145‑M1/125‑29 (MQ=255)                                                   aCAGGATGTCGTACCTGGCGAGGATCTC‑CTTCACCTTCGGCCAGTAGGTTTCCGGCGGGATGATCACGCCACCAGCGCCCTGGATCGGCTCGGCGATGAAGGCCGCGACGTTGTCTTCGCCGACTTCGAGGATCTTCTT‑CTCCAACTGc                                                                                              >  6:19812/1‑149 (MQ=255)                                                    cAGGATGTCGTACCTGGCGAGGATCTC‑CTTCACCTTCGGCCAGTAGGTTTCCGGCGGGATGATCACGCCACCAGCGCCCTGGATCGGCTCGGCGATGAAGGCCGCGACGTTGTCTTCGCCGACTTCGAGGATCTTCTT‑CTCCAACTGCt                                                                                             >  1:67633/1‑149 (MQ=255)                                                      ggATGTCGTACCTGGCGAGGATCTC‑CTTCACCTTCGGCCAGTAGGTTTCCGGCGGGATGATCACGCCACCAGCGCCCTGGATCGGCTCGGCGATGAAGGCCGCGACGTTGTCTTCGCCGACTTCGAGGATCTTCTT‑CTCCAACTGCTcg                                                                                           >  1:124431/1‑149 (MQ=255)                                                          gTCGTACCTGGCGAGGATCTC‑CTTCACCTTCGGCCAGTAGGTTTCCGGCGGGATGATCACGCCACCAGCGCCCTGGATCGGCTCGGCGATGAAGGCCGCGACGTTGTCTTCGCCGACTTCGAGGATCTTCTT‑CTCCAACTGCTcggcgg                                                                                       >  2:264013/1‑149 (MQ=255)                                                           tCGTACCTGGCGAGGATCTC‑CTTCACCTTCGGCCAGTAGGTTTCCGGCGGGATGATCACGCCACCAGCGCCCTGGATCGGCTCGGCGATGAAGGCCGCGACGTTGTCTTCGCCGACTTCGAGGATCTTCTT‑CTCCAACTGCTcggcgg                                                                                       <  3:277940/148‑1 (MQ=255)                                                            cGTACCTGGCGAGGATCTC‑CTTCACCTTCGGCCAGTAGGTTTCCGGCGGGATGATCACGCCACCAGCGCCCTGGATCGGCTCGGCGATGAAGGCCGCGACGTTGTCTTCGCCGACTTCGAGGATCTTCTT‑CTCCAACTGCTCGGCGGcc                                                                                     <  7:33667/149‑1 (MQ=255)                                                             gTACCTGGCGAGGATCTC‑CTTCACCTTCGGCCAGTAGGTTTCCGGCGGGATGATCACGCCACCAGCGCCCTGGATCGGCTCGGCGAagacaacgtcgcggccttcatcgccgagc                                                                                                                       >  5:180009‑M1/1‑86 (MQ=255)                                                             gTACCTGGCGAGGATCTC‑CTTCACCTTCGGCCAGTAGGTTTCCGGCGGGATGATCACGCCACCAGCGCCCTGGATCGGCTCGGCGAagacaacgtcgcggccttcatcgccgagc                                                                                                                       <  6:180009‑M1/115‑30 (MQ=255)                                                                           tctc‑CTTCACCTTCGGCCAGTAGGTTTCCGGCGGGATGATCACGCCACCAGCGCCCTGGATCGGCTCGGCGATGAAGGCCGCGACGTTGTCTTCGCCGACTTCGAGGATCTTCTT‑CTCCAACTGCTCGGCGGCCCAGACACCGAATTCg                                                                      >  8:290923/1‑149 (MQ=255)                                                                                cTTCACCTTCGGCCAGTAGGTTTCCGGCGGGATGATCACGCCACCAGCGCCCTGGATCGGCTCGGCGATGAAGGCCGCGACGTTGTCTTCGCCGACTTCGAGGAtctt                                                                                                            >  6:167499/1‑108 (MQ=255)                                                                                cTTCACCTTCGGCCAGTAGGTTTCCGGCGGGATGATCACGCCACCAGCGCCCTGGATCGGCTCGGCGATGAAGGCCGCGACGTTGTCTTCGCCGACTTCGAGGAtctt                                                                                                            <  5:167499/108‑1 (MQ=255)                                                                                   cACCTTCGGCCAGTAGGTTTCCGGCGGGATGATCACGCCACCAGCGCCCTGGATCGGCTCGGCGATGAAGGCCGCGACGTTGTCTTCGCCGACTTCGAGGATCTTCTT‑CTCCAACTGCTCGGCGGCCCAGACACCGAATTCGTCAggg                                                                <  7:21134/148‑1 (MQ=255)                                                                                     ccTTCGGCCAGTAGGTTTCCGGCGGGATGATCACGCCACCAGCGCCCTGGATCGGCTCGGCGATGAAGGCCGCGACGTTGTCTTCGCCGACTTCGAGGATCTTCTT‑CTCCAACTGCTCGGCGGCCCAGACACCGAATTCGTCAGGGGTc                                                             <  1:264013/149‑1 (MQ=255)                                                                                      cTTCGGCCAGTAGGTTTCCGGCGGGATGATCACGCCACCAGCGCCCTGGATCGGCTCGGCGATGAAGGCCGCGACGTTGTCTTCGCCGACTTCGAGGATCTTCTTCCTCCAACTGCTCGGCGGCCCAGACACCGAATTCGTCAGGGGTc                                                             <  1:226683/149‑1 (MQ=255)                                                                                         cGGCCAGTAGGTTTCCGGCGGGATGATCACGCCACCAGCGCCCTGGATCGGCTCGGCGATGAAGGCCGCGACGTTGTCTTCGCCGACTTCGAGGATCTTCTT‑CTCCAACTGCTCGGCGGCCCAGACACCGAATTCGTCAGGGGTCAt                                                           <  2:15331/147‑1 (MQ=255)                                                                                             cAGTAGGTTTCCGGCGGGATGATCACGCCACCAGCGCCCTGGATCGGCTCGGCGATGAAGGCCGCGACGTTGTCTTCGCCGACTTCGAGGATCTTCTT‑CTCCAACTGCTCGGCGGCCCAGACACCGAATTCGTCAGGGGTCATGTCGcc                                                     <  2:226116/149‑1 (MQ=255)                                                                                              aGTAGGTTTCCGGCGGGATGATCACGCCACCAGCGCCCTGGATCGGCTCGGCGATGAAGGCCGCGACGTTGTCTTCGCCGACTTCGAGGATCTTCTT‑CTCCAACTGCTCGGCGGCCCAGACACCGAATTCGTCAGGGGTCATGTCGcct                                                    <  2:67633/149‑1 (MQ=255)                                                                                                   gTTTCCGGCGGGATGATCACGCCACCAGCGCCCTGGATCGGCTCGGCGATGAAGGCCGCGACGTTGTCTTCGCCGACTTCGAGGATCTTCTT‑CTCCAAATGCTCGGCGGCCCAGACACCGAATTCTGAAGGGGTCATGTCGcctcccac                                               >  7:45823/1‑147 (MQ=255)                                                                                                              gatgatCACGCCACCAGCGCCCTGGATCGGCTCGGCGATGAAGGCCGCGACGTTGTCTTCGCCGACTTCGAGGATCTTCTT‑CTCCAACTGCTCGGCGGCCCAGACACCGAATTGGTCAGGGGTCATGTCGCCTCCCTCGCCGAACCAGt                                    <  1:78742/149‑1 (MQ=255)                                                                                                               atgatCACGCCACCAGCGCCCTGGATCGGCTCGGCGATGAAGGCCGCGACGTTGTCTTCGCCGACTTCGAGGATCTTCTT‑CTCCAACTGCTCGGCGGCCCAGACACCGAATTCGTCAGGGGTCATGTCGCCTCCCTCGCCGAACCAGTa                                   <  5:19812/149‑1 (MQ=255)                                                                                                                    cACGCCACCAGCGCCCTGGATCGGCTCGGCGATGAAGGCCGCGACGTTGTCTTCGCCGACTTCGAGGATCTTCTT‑CTCCAACTGCTCGGCGGCCCAGACACCGAATTCGTCAGGGGTCATGTCGCCTCCCTCGCCGAACCAGTACGGCt                              >  1:82057/1‑149 (MQ=255)                                                                                                                           ccaGCGCCCTGGATCGGCTCGGCGATGAAGGCCGCGACGTTGTCTTCGCCGACTTCGAGGATCTTCTT‑CTCCAACTGCTCGGCGGCCCAGACACCGAATTCGTCAGGGGTCATGTCGCCTCCCTCGCCGAACCAGTACGGCTGAGGGAt                       <  7:259545/149‑1 (MQ=255)                                                                                                                            caGCGCCCTGGATCGGCTCGGCGATGAAGGCCGCGACGTTGTCTTCGCCGACTTCGAGGATCTTCTT‑CTCCAACTGCTCGGCGGCCCAGACACCGAATTCGTCAGGGGTCATGTc                                                        >  6:231538/1‑115 (MQ=255)                                                                                                                            caGCGCCCTGGATCGGCTCGGCGATGAAGGCCGCGACGTTGTCTTCGCCGACTTCGAGGATCTTCTT‑CTCCAACTGCTCGGCGGCCCAGACACCGAATTCGTCAGGGGTCATGTc                                                        <  5:231538/115‑1 (MQ=255)                                                                                                                                   cTGGATCGGCTCGGTGATGAAGGCCGCGACGTTGTCTTCGCCGACTTCGAGGATCTTCTT‑CTCCAACTGCTCGGCGGCCCAGACACCGAATTCGTCAGGGGTCATGTCGCCTCCCTCGCCGAACCAGTACGGCTGAGGGATGTGCACGa               >  1:65522/1‑149 (MQ=255)                                                                                                                                           gctcggcGATGAAGGCCGCGACGTTGTCTtcgccgagccgatccagggcgctggtggcgtgatcatcccgccggaaacctactggccgaaggtgaaggagatcctcgccaggtac                                          <  6:180009‑M2/115‑87 (MQ=255)                                                                                                                                           gctcggcGATGAAGGCCGCGACGTTGTCTtcgccgagccgatccagggcgctggtggcgtgatcatcccgccggaaacctactggccgaaggtgaaggagatcctcgccaggtac                                          >  5:180009‑M2/1‑29 (MQ=255)                                                                                                                                           gctcggcGATGAAGGCCGCGACGTTGTCTTCGCCGACTTCGAGGATCTTCTT‑CTCCAACTGCTCGGCGGCCCAGACACCGAATTCGTCAGGGGTCATGTCGCCTCCCTCGCCGAACCAGTACGGCTGAGGGATGTGCACGATGCCCggg       <  7:290923/149‑1 (MQ=255)                                                                                                                                           gctcggcGATGAAGGCCGCGACGTTGTCTTCGCCGACTTCGAGGATCTTCTT‑CTCCAACTGCTCGGCGGCCCAGACACCGAATTCGTCAGGGGTCATGTCGCCTCCCTCGCCGAACCAGTACGGCTGAGGGATGTGCACGATGCCCgg        >  3:110679/1‑148 (MQ=255)                                                                                                                                            ctcggcGATGAAGGCCGCGACGTTGTCTtcgccgagccgatccagggcgctggtggcgtgatcatcccgccggaaacctactggccgaaggtgaaggagatcctcgccaggtacgacatcctgtt                               <  7:37145‑M2/125‑98 (MQ=255)                                                                                                                                            ctcggcGATGAAGGCCGCGACGTTGTCTtcgccgagccgatccagggcgctggtggcgtgatcatcccgccggaaacctactggccgaaggtgaaggagatcctcgccaggtacgacatcctgtt                               >  8:37145‑M2/1‑28 (MQ=255)                                                                                                                                                gcGATGAAGGCCGCGACGTTGTCTTCGCCGACTTCGAGGATCTTCTT‑CTCCAACTGCTCGGCGGCCCAGACACCGAATTCGTCAGGGGTCATGTCGCCTCCCTCGCCGAACCAGTACGGCTGAGGGATGTGCACGATGCCCGGGATCgg  >  5:241995/1‑149 (MQ=255)                                                                                                                                                 cGAagacaacgtcgcggccttcatcgccgagccgatccagggcgctggtggcgtgatcatcccgccggaaacctactggccgaaggtgaaggagatcctcgccaggtacgacatcctgttcgtcgccgacgaggtgatctgcggcttcg  <  2:226683‑M1/149‑147 (MQ=255)                                                                                                                                                   |                                                                                                                                                   GAACCACTCGCCGGTACGGCCGAAGCCGCAGATCACCTCGTCGGCGACGAACAGGATGTCGTACCTGGCGAGGATCTC‑CTTCACCTTCGGCCAGTAGGTTTCCGGCGGGATGATCACGCCACCAGCGCCCTGGATCGGCTCGGCGATGAAGGCCGCGACGTTGTCTTCGCCGACTTCGAGGATCTTCTT‑CTCCAACTGCTCGGCGGCCCAGACACCGAATTCGTCAGGGGTCATGTCGCCTCCCTCGCCGAACCAGTACGGCTGAGGGATGTGCACGATGCCCGGGATCGG  >  NC_002947/5909932‑5910222

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.