New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5910077	41 (0.790)	4 (0.080)	4/252	NT	9.5%	coding (674/1362 nt)	spuC‑II	polyamine:pyruvate transaminase
	?	NC_002947	= 5910097	37 (0.750)					coding (654/1362 nt)	spuC‑II	polyamine:pyruvate transaminase

GGCCGAAGCCGCAGATCACCTCGTCGGCGACGAACAGGATGTCGTACCTGGCGAGGATCTC‑CTTCACCTTCGGCCAGTAGGTTTCCGGCGGGATGATCACGCCACCAGCGCCCTGGATCGGCTCGGCGATGAAGGCCGCGACGTTGTCTTCGCCGACTTCGAGGATCTTCTT‑CTCCAACTGCTCGGCGGCCCAGACACCGAATTCGTCAGGGGTCATGTCGCCTCCCTCGCCGAACCAGTACGGCTGAGGGATGTGCACGATGCCCGGGATCGGCAGGCCACCCTGCTCGTGCATG  >  NC_002947/5909949‑5910244                                                                                                                                                      |                                                                                                                                                     ggCCGAAGCCGCAGATCACCTCGTCGGCGACGAACAGGATGTCGTACCTGGCGAGGATCTC‑CTTCACCTTCGGCCAGTAGGTTTCCGGCGGGATGATCACGCCACCAGCGCCCTGGATCGGCTCGGCGATGAAGGCCGCGACGTTGTCt                                                                                                                                                      >  1:15331/1‑149 (MQ=255) ggCCGAAGCCGCAGATCACCTCGTCGGCGACGAACAGGATGTCGTACCTGGCGAGGATCTC‑CTTCACCTTCGGCCAGTAGGTTTCCGGCGGGATGATCACGCCACCAGCGCCCTGGATCGGCTCGGCGATGAAGGCCGCGACGTTGTCt                                                                                                                                                      <  7:154998/149‑1 (MQ=255)    cGAAGCCGCAGATCACCTCGTCGGCGACGAACAGGATGTCGTACCTGGCGAGGATCTC‑CTTCACCTTCGGCCAGTAGGTTTCCGGCGGGATGATCACGCCACCAGCGCCCTGGATCGGCTCGGCGATGAAGGCCGCGACGTTGTCTtcg                                                                                                                                                   <  2:226683‑M2/149‑4 (MQ=255)              gATCACCTCGTCGGCGACGAACAGGATGTCGTACCTGGCGAGGATCTC‑CTTCACCTTCGGCCAGTAGGTTTCCGGCGGGATGATCACGCCACCAGCGCCCTGGATCGGCTCGGCGATGAAGGCCGCGACGTTGTCTTCGCCGACTTCGa                                                                                                                                         <  6:276991/149‑1 (MQ=255)                  aCCTCGTCGGCGACGAACAGGATGTCGTACCTGGCGAGGATCTC‑CTTCACCTTCGGCCAGTAGGTTTCCGGCGGGATGATCACGCCACCAGCGCCCTGGATCGGCTCGGCGATGAAGGCCGCGACGTTGTCTTCGCCGACTTCGAGGAt                                                                                                                                     <  7:141399/149‑1 (MQ=255)                   ccTCGTCGGCGACGAACAGGATGTCGTACCTGGCGAGGATCTCGCTTCACCTTCGGCCAGTAGGTTTCCGGCGGGATGATCACGCCACCAGCGCCCTGGATCGGCTCGGCGATGAAGGCCGCGACGTTGTCTTAGCCGCCTTCGAGGa                                                                                                                                      >  1:226116/1‑148 (MQ=255)                   ccTCGTCGGCGACGAACAGGATGTCGTACCTGGCGAGGATCTC‑CTTCACCTTCGGCCAGTAGGTTTCCGGCGGGATGATCACGCCACCAGCGCCCTGGATCGGCTCGGCGATGAAGGCCGCGACGTTGTCTTCGCCGACTTCGAGGAtc                                                                                                                                    >  8:259545/1‑149 (MQ=255)                       gtcgGCGACGAACAGGATGTCGTACCTGGCGAGGATCTC‑CTTCACCTTCGGCCAGTAGGTTTCCGGCGGGATGATCACGCCACCAGCGCCCTGGATCGGCTCGGCGATGAAGGCCGCGACGTTGTCTTCGCCGACTTCGAGGAtcttc                                                                                                                                 <  6:231652/148‑1 (MQ=255)                           tcgacgaACAGGATGTCGTACCTGGCGAGGATCTC‑CTTCACCTTCGGCCAGTAGGTTTCCGGCGGGATGATCACGCCACCAGCGCCCTGGATCGGCTCGGCGATGAAGGCCGCGACGTTGTCTTCGCCGACTTCGAGGATCTTCTt‑ctc                                                                                                                           >  8:21134/2‑149 (MQ=255)                            cgacgaACAGGATGTCGTACCTGGCGAGGATCTC‑CTTCACCTTCGGCCAGTAGGTTTCCGGCGGGATGATCACGCCACCAGCGCCCTGGATCGGCTCGGCGATGAAGGCCGCGACGTTGTCTTCGCCGACTTCGAGGAtcttctt‑c                                                                                                                             <  6:47802/146‑1 (MQ=255)                            cgacgaACAGGATGTCGTACCTGGCGAGGATCTC‑CTTCACCTTCGGCCAGTAGGTTTCCGGCGGGATGATCACGCCACCAGCGCCCTGGATCGGCTCGGCGATGAAGGCCGCGACGTTGTCTTCGCCGACTTCGAGGAtcttctt‑c                                                                                                                             >  5:47802/1‑146 (MQ=255)                                  aCAGGATGTCGTACCTGGCGAGGATCTC‑CTTCACCTTCGGCCAGTAGGTTTCCGGCGGGATGATCACGCCACCAGCGCCCTGGATCGGCTCGGCGATGAAGGCCGCGACGTTGTCTTCGCCGACTTCGAGGATCTTCTT‑CTCCAACTGc                                                                                                                    >  6:19812/1‑149 (MQ=255)                                   cAGGATGTCGTACCTGGCGAGGATCTC‑CTTCACCTTCGGCCAGTAGGTTTCCGGCGGGATGATCACGCCACCAGCGCCCTGGATCGGCTCGGCGATGAAGGCCGCGACGTTGTCTTCGCCGACTTCGAGGATCTTCTT‑CTCCAACTGCt                                                                                                                   >  1:67633/1‑149 (MQ=255)                                     ggATGTCGTACCTGGCGAGGATCTC‑CTTCACCTTCGGCCAGTAGGTTTCCGGCGGGATGATCACGCCACCAGCGCCCTGGATCGGCTCGGCGATGAAGGCCGCGACGTTGTCTTCGCCGACTTCGAGGATCTTCTT‑CTCCAACTGCTcg                                                                                                                 >  1:124431/1‑149 (MQ=255)                                         gTCGTACCTGGCGAGGATCTC‑CTTCACCTTCGGCCAGTAGGTTTCCGGCGGGATGATCACGCCACCAGCGCCCTGGATCGGCTCGGCGATGAAGGCCGCGACGTTGTCTTCGCCGACTTCGAGGATCTTCTT‑CTCCAACTGCTcggcgg                                                                                                             >  2:264013/1‑149 (MQ=255)                                          tCGTACCTGGCGAGGATCTC‑CTTCACCTTCGGCCAGTAGGTTTCCGGCGGGATGATCACGCCACCAGCGCCCTGGATCGGCTCGGCGATGAAGGCCGCGACGTTGTCTTCGCCGACTTCGAGGATCTTCTT‑CTCCAACTGCTcggcgg                                                                                                             <  3:277940/148‑1 (MQ=255)                                           cGTACCTGGCGAGGATCTC‑CTTCACCTTCGGCCAGTAGGTTTCCGGCGGGATGATCACGCCACCAGCGCCCTGGATCGGCTCGGCGATGAAGGCCGCGACGTTGTCTTCGCCGACTTCGAGGATCTTCTT‑CTCCAACTGCTCGGCGGcc                                                                                                           <  7:33667/149‑1 (MQ=255)                                                          tctc‑CTTCACCTTCGGCCAGTAGGTTTCCGGCGGGATGATCACGCCACCAGCGCCCTGGATCGGCTCGGCGATGAAGGCCGCGACGTTGTCTTCGCCGACTTCGAGGATCTTCTT‑CTCCAACTGCTCGGCGGCCCAGACACCGAATTCg                                                                                            >  8:290923/1‑149 (MQ=255)                                                               cTTCACCTTCGGCCAGTAGGTTTCCGGCGGGATGATCACGCCACCAGCGCCCTGGATCGGCTCGGCGATGAAGGCCGCGACGTTGTCTTCGCCGACTTCGAGGAtctt                                                                                                                                  >  6:167499/1‑108 (MQ=255)                                                               cTTCACCTTCGGCCAGTAGGTTTCCGGCGGGATGATCACGCCACCAGCGCCCTGGATCGGCTCGGCGATGAAGGCCGCGACGTTGTCTTCGCCGACTTCGAGGAtctt                                                                                                                                  <  5:167499/108‑1 (MQ=255)                                                                  cACCTTCGGCCAGTAGGTTTCCGGCGGGATGATCACGCCACCAGCGCCCTGGATCGGCTCGGCGATGAAGGCCGCGACGTTGTCTTCGCCGACTTCGAGGATCTTCTT‑CTCCAACTGCTCGGCGGCCCAGACACCGAATTCGTCAggg                                                                                      <  7:21134/148‑1 (MQ=255)                                                                    ccTTCGGCCAGTAGGTTTCCGGCGGGATGATCACGCCACCAGCGCCCTGGATCGGCTCGGCGATGAAGGCCGCGACGTTGTCTTCGCCGACTTCGAGGATCTTCTT‑CTCCAACTGCTCGGCGGCCCAGACACCGAATTCGTCAGGGGTc                                                                                   <  1:264013/149‑1 (MQ=255)                                                                     cTTCGGCCAGTAGGTTTCCGGCGGGATGATCACGCCACCAGCGCCCTGGATCGGCTCGGCGATGAAGGCCGCGACGTTGTCTTCGCCGACTTCGAGGATCTTCTTCCTCCAACTGCTCGGCGGCCCAGACACCGAATTCGTCAGGGGTc                                                                                   <  1:226683/149‑1 (MQ=255)                                                                        cGGCCAGTAGGTTTCCGGCGGGATGATCACGCCACCAGCGCCCTGGATCGGCTCGGCGATGAAGGCCGCGACGTTGTCTTCGCCGACTTCGAGGATCTTCTT‑CTCCAACTGCTCGGCGGCCCAGACACCGAATTCGTCAGGGGTCAt                                                                                 <  2:15331/147‑1 (MQ=255)                                                                            cAGTAGGTTTCCGGCGGGATGATCACGCCACCAGCGCCCTGGATCGGCTCGGCGATGAAGGCCGCGACGTTGTCTTCGCCGACTTCGAGGATCTTCTT‑CTCCAACTGCTCGGCGGCCCAGACACCGAATTCGTCAGGGGTCATGTCGcc                                                                           <  2:226116/149‑1 (MQ=255)                                                                             aGTAGGTTTCCGGCGGGATGATCACGCCACCAGCGCCCTGGATCGGCTCGGCGATGAAGGCCGCGACGTTGTCTTCGCCGACTTCGAGGATCTTCTT‑CTCCAACTGCTCGGCGGCCCAGACACCGAATTCGTCAGGGGTCATGTCGcct                                                                          <  2:67633/149‑1 (MQ=255)                                                                                  gTTTCCGGCGGGATGATCACGCCACCAGCGCCCTGGATCGGCTCGGCGATGAAGGCCGCGACGTTGTCTTCGCCGACTTCGAGGATCTTCTT‑CTCCAAATGCTCGGCGGCCCAGACACCGAATTCTGAAGGGGTCATGTCGcctcccac                                                                     >  7:45823/1‑147 (MQ=255)                                                                                             gatgatCACGCCACCAGCGCCCTGGATCGGCTCGGCGATGAAGGCCGCGACGTTGTCTTCGCCGACTTCGAGGATCTTCTT‑CTCCAACTGCTCGGCGGCCCAGACACCGAATTGGTCAGGGGTCATGTCGCCTCCCTCGCCGAACCAGt                                                          <  1:78742/149‑1 (MQ=255)                                                                                              atgatCACGCCACCAGCGCCCTGGATCGGCTCGGCGATGAAGGCCGCGACGTTGTCTTCGCCGACTTCGAGGATCTTCTT‑CTCCAACTGCTCGGCGGCCCAGACACCGAATTCGTCAGGGGTCATGTCGCCTCCCTCGCCGAACCAGTa                                                         <  5:19812/149‑1 (MQ=255)                                                                                                   cACGCCACCAGCGCCCTGGATCGGCTCGGCGATGAAGGCCGCGACGTTGTCTTCGCCGACTTCGAGGATCTTCTT‑CTCCAACTGCTCGGCGGCCCAGACACCGAATTCGTCAGGGGTCATGTCGCCTCCCTCGCCGAACCAGTACGGCt                                                    >  1:82057/1‑149 (MQ=255)                                                                                                          ccaGCGCCCTGGATCGGCTCGGCGATGAAGGCCGCGACGTTGTCTTCGCCGACTTCGAGGATCTTCTT‑CTCCAACTGCTCGGCGGCCCAGACACCGAATTCGTCAGGGGTCATGTCGCCTCCCTCGCCGAACCAGTACGGCTGAGGGAt                                             <  7:259545/149‑1 (MQ=255)                                                                                                           caGCGCCCTGGATCGGCTCGGCGATGAAGGCCGCGACGTTGTCTTCGCCGACTTCGAGGATCTTCTT‑CTCCAACTGCTCGGCGGCCCAGACACCGAATTCGTCAGGGGTCATGTc                                                                              >  6:231538/1‑115 (MQ=255)                                                                                                           caGCGCCCTGGATCGGCTCGGCGATGAAGGCCGCGACGTTGTCTTCGCCGACTTCGAGGATCTTCTT‑CTCCAACTGCTCGGCGGCCCAGACACCGAATTCGTCAGGGGTCATGTc                                                                              <  5:231538/115‑1 (MQ=255)                                                                                                                  cTGGATCGGCTCGGTGATGAAGGCCGCGACGTTGTCTTCGCCGACTTCGAGGATCTTCTT‑CTCCAACTGCTCGGCGGCCCAGACACCGAATTCGTCAGGGGTCATGTCGCCTCCCTCGCCGAACCAGTACGGCTGAGGGATGTGCACGa                                     >  1:65522/1‑149 (MQ=255)                                                                                                                          gctcggcGATGAAGGCCGCGACGTTGTCTtcgccgagccgatccagggcgctggtggcgtgatcatcccgccggaaacctactggccgaaggtgaaggagatcctcgccaggtac                                                                <  6:180009‑M2/115‑87 (MQ=255)                                                                                                                          gctcggcGATGAAGGCCGCGACGTTGTCTtcgccgagccgatccagggcgctggtggcgtgatcatcccgccggaaacctactggccgaaggtgaaggagatcctcgccaggtac                                                                >  5:180009‑M2/1‑29 (MQ=255)                                                                                                                          gctcggcGATGAAGGCCGCGACGTTGTCTTCGCCGACTTCGAGGATCTTCTT‑CTCCAACTGCTCGGCGGCCCAGACACCGAATTCGTCAGGGGTCATGTCGCCTCCCTCGCCGAACCAGTACGGCTGAGGGATGTGCACGATGCCCggg                             <  7:290923/149‑1 (MQ=255)                                                                                                                          gctcggcGATGAAGGCCGCGACGTTGTCTTCGCCGACTTCGAGGATCTTCTT‑CTCCAACTGCTCGGCGGCCCAGACACCGAATTCGTCAGGGGTCATGTCGCCTCCCTCGCCGAACCAGTACGGCTGAGGGATGTGCACGATGCCCgg                              >  3:110679/1‑148 (MQ=255)                                                                                                                           ctcggcGATGAAGGCCGCGACGTTGTCTtcgccgagccgatccagggcgctggtggcgtgatcatcccgccggaaacctactggccgaaggtgaaggagatcctcgccaggtacgacatcctgtt                                                     <  7:37145‑M2/125‑98 (MQ=255)                                                                                                                           ctcggcGATGAAGGCCGCGACGTTGTCTtcgccgagccgatccagggcgctggtggcgtgatcatcccgccggaaacctactggccgaaggtgaaggagatcctcgccaggtacgacatcctgtt                                                     >  8:37145‑M2/1‑28 (MQ=255)                                                                                                                               gcGATGAAGGCCGCGACGTTGTCTTCGCCGACTTCGAGGATCTTCTT‑CTCCAACTGCTCGGCGGCCCAGACACCGAATTCGTCAGGGGTCATGTCGCCTCCCTCGCCGAACCAGTACGGCTGAGGGATGTGCACGATGCCCGGGATCgg                        >  5:241995/1‑149 (MQ=255)                                                                                                                                        tccGCGACGTTGTCTTCGCCGACTTGGAGGATCTTCTT‑CTCCAACTGCTCGGCGGCCCAGACACCGAATTCGTCAGGGGTCATGTCGCCTCCCTCGCCGAACCAGTACGGCTGAGTGATGTGCACGATGCCCGGGATCGGCAGGCCAcc               <  6:267467/148‑1 (MQ=255)                                                                                                                                         ccGCGACGTTGTCTTCGCCGACTTCGAGGATCTTCTT‑CTCCAACTGCTCGGCGGCCCAGACACCGAATTCGTCAGGGGTCATGTCGCCTCCCTCGCCGAACCAGTACGGCTGAGGGATGTGCACGATGCCCGGGATCGGCAGGCCAccc              <  7:251579/149‑1 (MQ=255)                                                                                                                                                 ttGTCTTCGCCGACTTCGAGGATCTTCTT‑CTCCAACTGCTCGGCGGCCCAGACACCGAATTCGTCAGGGGTCATGTCGCCTCCCTCGCCGAACCAGTACGGCTGAGGGATGTGCACGATGCACGGGATCGGCAGGCCACCCTGCTCGTg      >  7:239193/1‑149 (MQ=255)                                                                                                                                                  tGTCTTCGCCGACTTCGAGGATCTTCTT‑CTCCAACTGCTCGGCGGCCCAGACACCGAATTCGTCAGGGGTCATGTCGCCTCCCTCGCCGAACCAGTACGGCTGAGGGATGTGCACGATGCCCGGGATCGGCAGGCCACCCTGCTCGTg      >  3:4912/1‑148 (MQ=255)                                                                                                                                                   gTCTTCGCCGACTTCGAGGATCTTCTT‑CTCCAACTGCTCGGCGGCCCAGACACCGAATTCGTCAGGGGTCATGTCGCCTCCCTCGCCGAACCAGTACGGCTGAGGGATGTGCACGATGCCCGGGATCGGCAGGCCACCCTGCTCGTGCa    >  7:124110/1‑149 (MQ=255)                                                                                                                                                   gTCTTCGCCGACTTCGAGGATCTTCTT‑CTCCAACTGCTCGGCGGCCCAGACACCGAATTCGTCAGGGGTCATGTCGCCTCCCTCGCCGAACCAGTACGGCTGAGGGATGTGCACGATGCCCGGGATCGGCAGGCCACCCTGCTCGTGCa    >  1:173682/1‑149 (MQ=255)                                                                                                                                                     cTTCGCCGACTTCGAGGATCTTCTT‑CTCCAACTGCTCGGCGGCCCAGACACCGAATTCGTCAGGGGTCATGTCGCCTCCCTCGCCGAACCAGTACGGCTGAGGGATGTGCACGATGCCCGGGATCGGCAGGCCACCCTGCTCGTGCATg  >  6:193938/1‑149 (MQ=255)                                                                                                                                                     cTTCGCCGACTTCGAGGATCTTCTT‑CTCCAACTGCTCGGCGGCCCAGACACCGAATTCGTCAGGGGTCATGTCGCCTCCCTCGCCGAACCAGTACGGCTGAGGGATGTGCACGATGCCCGGGATCGGCAGGCCACCCTGCTCGTGCATg  >  6:189320/1‑149 (MQ=255)                                                                                                                                                      |                                                                                                                                                     GGCCGAAGCCGCAGATCACCTCGTCGGCGACGAACAGGATGTCGTACCTGGCGAGGATCTC‑CTTCACCTTCGGCCAGTAGGTTTCCGGCGGGATGATCACGCCACCAGCGCCCTGGATCGGCTCGGCGATGAAGGCCGCGACGTTGTCTTCGCCGACTTCGAGGATCTTCTT‑CTCCAACTGCTCGGCGGCCCAGACACCGAATTCGTCAGGGGTCATGTCGCCTCCCTCGCCGAACCAGTACGGCTGAGGGATGTGCACGATGCCCGGGATCGGCAGGCCACCCTGCTCGTGCATG  >  NC_002947/5909949‑5910244

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.