New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 251781	44 (0.850)	4 (0.080)	4/252	NT	8.0%	intergenic (+22/‑40)	PP_0201/PP_5432	hypothetical protein/hypothetical protein
	?	NC_002947	= 251799	50 (1.010)					intergenic (+40/‑22)	PP_0201/PP_5432	hypothetical protein/hypothetical protein

AAGGCGATGTCTACCTGGAGGCGGGTGACCACGATCACCTGATTCACATGAGCATGGAGCAGTACATGAAACTGGTGCCGCACGCCGAAGTGCGCGAGCTGTGCTGATGTTTTCAAACCAATGCCAGGCGGGCGTCGTGGACGGCTTGCCTGG‑CGCTCAG‑GAGGAACCATGGAAGCGCCGATCCATCCCTTTGCCGAACTGTTCAAGCAGCTGGGCTTACCCGACGATCCCACGAGTATCGATCAGTTCATCACCAGCCATTCCCCGCTGAAGAACGAAATCAAGCTGGTGGA  >  NC_002947/251653‑251945                                                                                                                                                   |                                                                                                                                                     aaGGCGATGTCTACCTGGAGGCGGGTGACCACGATCACCTGATTCACATGAGCATGGAGCAGTACATGAAACTGGTGCCGCACGCCGAAGTGCGCGAGCTGTGCTGATGTTTTCAAACCAATGCCAGGCGGGCGTCGTGGACGGCTTgc                                                                                                                                                    >  8:261019‑M2/1‑147 (MQ=255)              ccTGGAGGCGGGTGACCACGATCACCTGATTCACATGAGCATGGAGCAGTACATGAAACTGGTGCCGCACGCCGAAGTGCGCGAGCTGTGCTGATGTTTTCAAACCAATGCCAGGCGGGCGTCGTGGACGGCTTGCCTGG‑CGCTCag‑ga                                                                                                                                     <  7:241151/149‑1 (MQ=255)                   aGGCGGGTGACCACGATCACCTGATTCACATGAGCATGGAGCAGTACATGAAACTGGTGCCGCACGCCGAAGTGCGCGAGCTGTGCTGATGTTTTCAAACCAATGCCAGGCGGGCGTCGTGGACGGCTTGCCTGG‑CGCTCAG‑GAGGAAc                                                                                                                                <  4:90952/149‑1 (MQ=255)                      cGGGTGACCACGATCACCTGATTCACATGAGCATGGAGCAGTACATGAAACTGGCGCCGCACGCCGAAGTGCGCGAGCTGTGCTGATGTTTTCAAACCAATGCCAGGCGGGCGTCGTGGACGGCTTGCCTGG‑CGCTCAG‑GAGGAACCAt                                                                                                                             <  3:257022/149‑1 (MQ=255)                       gggTGACCACGATCACCTGATTCACATGAGCATGGAGCAGTACATGAAACTGGTGCCGCACGCCGAAGTGCGCGAGCTGTGCTGATGTTTTCAAACCAATGCCAGGCGGGCGTCGTGGACGGCTTGCCTGG‑CGCTCAG‑GAGGAACCATg                                                                                                                            >  5:107504/1‑149 (MQ=255)                        ggTGACCACGATCACCTGATTCACATGAGCATGGAGCAGTACATGAAACTGGTGCCGCACGCCGAAGTGCGCGAGCTGTGCTGATGTTTTCAAACCAATGCCAGGCGGGCGTCGTGGACGGCTTGCCTGG‑CGCTCAG‑GAGGAACCATgg                                                                                                                           <  1:197423/149‑1 (MQ=255)                        ggTGACCACGATCACCTGATTCACATGAGCATGGAGCAGTACATGAAACTGGTGCCGCACGCCGAAGTGCGCGAGCTGTGCTGATGTTTTCAAACCAATGCCAGGCGGGCGTCGTGGACGGCTTGCCTGG‑CGCTCAG‑GAGGAACCATg                                                                                                                            >  4:79771/1‑148 (MQ=255)                             ccACGATCACCTGATTCACATGAGCATGGAGCAGTACATGAAACTGGTGCCGCACGCCGAAGTGCGCGAGCTGTGCTGATGTTTTCAAACCAATGCCAGGCGGGCGTCGTGGACGGCTTGCCTGG‑CGCTCAG‑GAGGAACCATGGAAgcg                                                                                                                      >  4:221556/1‑149 (MQ=255)                                      ccTGATTCACATGAGCATGGAGCAGTACATGAAACTGGTGCCGCACGCCGAAGTGCGCGAGCTGTGCTGATGTTTTCAAACCAATGCCAGGCGGGCGTCGTGGACGGCTTGCCTGG‑CGCTCAG‑GAGGAACCATGGAAGCGCCGatc                                                                                                                <  2:180701/146‑1 (MQ=255)                                      ccTGATTCACATGAGCATGGAGCAGTACATGAAACTGGTGCCGCACGCCGAAGTGCGCGAGCTGTGCTGATGTTTTCAAACCAATGCCAGGCGGGCGTCGTGGACGGCTTGCCTGG‑CGCTCAG‑GAGGAACCATGGAAGCGCCGatc                                                                                                                >  1:180701/1‑146 (MQ=255)                                       cTGATTCACATGAGCATGGAGCAGTACATGAAACTGGTGCCGCACGCCGAAGTGCGCGAGCTGTGCTGATGTTTTCAAACCAATGCCAGGCGGGCGTCGTGGACGGCTTGCCTGG‑CGCTCAG‑GAGGAACCATGGAAGCGCCGatccatc                                                                                                            >  2:234890/1‑149 (MQ=255)                                          aTTCACATGAGCATGGAGCAGTACATGAAACTGGTGCCGCACGCCGAAGTGCGCGAGCTGTGCTGATGTTTTCAAACCAATGCCAGGCGGGCGTCGTGGACGGCTTGCCTGG‑CGCTCAG‑GAGGAACCATGGAAGCGCCGatccatcc                                                                                                           <  2:204178/147‑1 (MQ=255)                                              acaTGAGCATGGAGCAGTACATGAAACTGGTGCCGCACGCCGAAGTGCGCGAGCTGTGCTGATGTTTTCAAACCAATGCCAGGCGGGCGTCGTGGACGGCTTGCCTGG‑CGCTCAG‑GAGGAACCATGGAAGCGCCGATCCATCCCTTTGc                                                                                                     >  8:61835/1‑149 (MQ=255)                                              acaTGAGCATGGAGCAGTACATGAAACTGGTGCCGCACGCCGAAGTGCGCGAGCTGTGCTGATGTTTTCAAACCAATGCCAGGCGGGCGTCGTGGACGGCTTGCCTGG‑CGCTCAG‑GAGGAACCATGGAAGCGCCGATCCATCCCTTTGc                                                                                                     >  3:74854/1‑149 (MQ=255)                                                  gAGCATGGAGCAGTACATGAAACTGGTGCCGCACGCCGAAGTGCGCGAGCTGTGCTGATGTTTTCAAACCAATGCCAGGCGGGCGTCGTGGACGGCTTGCCTGG‑CGCTCAG‑GAGGAACCATGGAAGCGCCGATCCATCCCTTTGCCGaa                                                                                                 >  5:228854/1‑149 (MQ=255)                                                    gCATGGAGCAGTACATGAAACTGGTGCCGCACGCCGAAGTGCGCGAGCTGTGCTGATGTTTTCAAACCAATGCCAGGCGGGCGTCGTGGACGGCTTGCCTGGTCGCTCAG‑GAGGAACCATGGAAGCGCCGATCCATCCCTTTGCCGAAc                                                                                                <  1:234890/149‑1 (MQ=255)                                                     cATGGAGCAGTACATGAAACTGGTGCCGCACGCCGAAGTGCGCGAGCTGTGCTGATGTTTTCAAACCAATGCCAGGCGGGCGTCGTGGACGGCTTGCCTGG‑CGCTCAG‑GAGGAACCATGGAAGCGCCGATCCATCCCTTTGCCGAACTg                                                                                              >  8:216933/1‑149 (MQ=255)                                                         gAGCAGTACATGAAACTGGTGCCGCACGCCGAAGTGCGCGAGCTGTGCTGATGTTTTCAAACCAATGCCAGGCGGGCGTCGTGGACGGCTTGCCTGG‑CGCTCAG‑GAGGAACCATGGAAGCGCCGATCCATCCCTTTGCCGAACTGTTc                                                                                           <  5:130903/148‑1 (MQ=255)                                                          aGCAGTACATGAAACTGGTGCCGCACACCGAAGTGCGCGAGCTGTGCTGATGTTTTCAAACCAATGCCAGGCGGGCGTCGTGGACGGCTTGCCTGG‑CGCTCAG‑GAGGAACCATGGAAGCGCCGATCCATCCCTTTGCCGAACTGTTCaa                                                                                         <  6:259197/149‑1 (MQ=255)                                                                 cATGAAACTGGTGCCGCACGCCGAAGTGCGCAAGCTGTGCTGATGTTTTCAAACCAATGCCAGGCGGGCGTCGTGGACGGCTTGCCTGG‑CGCTCAG‑GAGGAACCATGGAAGCGCCGATCCATCCCTTTGCCGAACTGTTCAAGCAGCTg                                                                                  >  1:33663/1‑149 (MQ=255)                                                                  aTGAGACTGGTGCCGCACGCCGAAGTGCGCGAGCTGTGCTGATGTTTTCAAACCAATGCCAGGCGGGCGTCGTGGACGGCTTGCCTGG‑CGCTCAG‑GAGGAACCATGGAAGCGCCGATCCATCCCTTTGCCGAACTGTTCAAGCAGCTgg                                                                                 >  5:322767/1‑149 (MQ=255)                                                                  aTGAAACTGGTGCCGCACGCCGAAGTGCGCGAGCTGTGCTGATGTTTTCAAACCAATGCCAGGCGGGCGTCGTGGACGGCTTGCCTGG‑CGCTCAG‑GAGGAACCATGGAAGCGCCGATCCATCCCTTTGCCGAACTGTTCAAGCAGCTgg                                                                                 <  3:221556/149‑1 (MQ=255)                                                                   tGAAACTGGTGCCGCACGCCGAAGTGCGCGAGCTGTGCTGATGTTTTCAAACCAATGCCAGGCGGGCGTCGTGGACGGCTTGCCTGG‑CGCTCAG‑GAGGAACCATGGAAGCGCCGATCCATCCCTTTGCCGAACTGTTCAAGCAGCTggg                                                                                <  5:167046/149‑1 (MQ=255)                                                                        cTGGTGCCGCACGCCGAAGTGCGCGAGCTGTGCTGATGTTTTCAAACCAATGCCAGGCGGGCGTCGTGGACGGCTTGCCTGG‑CGCTCAG‑GAGGAACCATGGAAGCGCCGATCCATCCCTTTGCCGAACTGTTCAAGCAGCTGGGCTTAc                                                                           <  7:61835/149‑1 (MQ=255)                                                                            tGCCGCACGCCGAAGTGCGCGAGCTGTGCTGATGTTTTCAAACCAATGCCAGGCGGGCGTCGTGGACGGCTTGCCTGG‑CGCTCAG‑GAGGAACCATGGAAGCGCCGATCCATCCCTTTGCCGAACTGTTCAAGCAGCTGGGCTTACCcga                                                                       <  3:79771/149‑1 (MQ=255)                                                                            tGCCGCACGCCGAAGTGCGCGAGCTGTGCTGATGTTTTCAAACCAATGCCAGGCGGGCGTCGTGGACGGCTTGCCTGG‑CGCTCAG‑GAGGAACCATGGAAGCGCCGATCCATCCCTTTGCCGAACTGTTCAAGCAGCTGGGCTTACCcga                                                                       <  2:33663/149‑1 (MQ=255)                                                                                gCACGCCGAAGTGCGCGAGCTGTGCTGATGTTTTCAAACCAATGCCAGGCGGGCGTCGTGGACGGCTTGCCTGG‑CGCTCAG‑GAGGAACCATGGAAGCGCCGATCCATCCCTTTGCCGAACTGTTCAAGCAGCTGGGCTTACCCGACGAt                                                                   >  5:260140/1‑149 (MQ=255)                                                                                    gCCGAAGTGCGCGAGCTGTGCTGATGTTTTCAAACCAATGCCAGGCGGGCGTCGTGGACGGCTTGCCTGG‑CGCTCAG‑GAGGAACCATGGAAGCGCCGATCCATCCCTTTGCCGAACTGTTCAAGCAGCTGGGCTTAcc                                                                          >  6:224552/1‑138 (MQ=255)                                                                                    gCCGAAGTGCGCGAGCTGTGCTGATGTTTTCAAACCAATGCCAGGCGGGCGTCGTGGACGGCTTGCCTGG‑CGCTCAG‑GAGGAACCATGGAAGCGCCGATCCATCCCTTTGCCGAACTGTTCAAGCAGCTGGGCTTAcc                                                                          <  5:224552/138‑1 (MQ=255)                                                                                           tGCGCGAGCTGTGCTGATGTTTTCAAACCAATGCCAGGCGGGCGTCGTGGACGGCTTGCCTGG‑CGCTCAG‑GAGGAACCATGGAAGCGCCGATCCATCCCTTTGCCGAACTGTTCAAGCAGCTGGGCTTACCCGACGATCCCACGAGTAt                                                        <  4:74854/149‑1 (MQ=255)                                                                                             cgcgAGCTGTGCTGATGTTTTCAAACCAATGCCAGGCGGGCGTCGTGGACGGCTTGCCTGG‑CGCTCAG‑GAGGAACCATGGAAGCGCCGATCCATCCCTTTGCCGAACTGTTCAAGCAGCTGGGCTTACCCGACGATCCCACGAGTATc                                                       <  6:107504/148‑1 (MQ=255)                                                                                                 aGCTGTGCTGATGTTTTCAAACCAATGCCAGGCGGGCGTCGTGGACGGCTTGCCTGG‑CGCTCAG‑GAGGAACCATGGAAGCGCCGATCCATCCCTTTGCCGAACTGTTCAAGCAGCTGGGCTTACCCGACGATCCCACGAGTATCGAt                                                    >  8:286600/1‑147 (MQ=255)                                                                                                      tgCTGATGTTTTCAAACCAATGCCAGGCGGGCGTCGTGGACGGCTTGCCTGG‑CGCTCAG‑GAGGAACCATGGAAGCGCCGATCCATCCCTTTGCCGAACTGTTCAAGCAGCTGGGCTTACCCGACGATCCCACGAGTATCGATCAGtt                                               <  6:50025/147‑1 (MQ=255)                                                                                                       gCTGATGTTTTCAAACCAATGCCAGGCGGGCGTCGTGGACGGCTTGCCTGG‑CGCTCAG‑GAGGAACCATGGAAGCGCCGATCCATCCCTTTGCCGAACTGTTCACGCAGCTGGGCTTACCCGACGATCCCACGAGTATCGATCAGTtcat                                            <  6:260140/149‑1 (MQ=255)                                                                                                         tGATGTTTTCAAACCAATGCCAGGCGGGCGTCGTGGACGGCTTGCCTGG‑CGCTCAG‑GAGGAACCATTGAAGCGCAGATCCATCCCTTTGCCGAACTGTTCAACCAGCTGGGCTTACCCTACGATCCCACGAGTATCGATCAGTtcaga                                           >  8:260091/1‑146 (MQ=255)                                                                                                         tGATGTTTTCAAACCAATGCCAGGCGGGCGTCGTGGACGGCTTGCCTGG‑CGCTCAG‑GAGGAACCATGGAAGCGCCGATCCATCCCTTTGCCGAACTGTTCAAGCAGCTGGGCTTACCCGTCGATCCCACGAGTATCGATCAGTtcatca                                          >  2:109506/1‑149 (MQ=255)                                                                                                         tGATGTTTTCAAACCAATGCCAGGCGGGCGTCGTGGACGGCTTGCCTGG‑CGCTCAG‑GAGGAACCATGGAAGCGCCGATCCATCCCTTTGCCGAACTGTTCAAGCAGCTGGGCTTACCCGACGATCCCACGAGTATCGATCAGTtcatca                                          >  5:156883/1‑149 (MQ=255)                                                                                                          gATGTTTTCAAACCAATGCCAGGCGGGCGTCGTGGACGGCTTGCCTGG‑CGCTCAG‑GAGGAACCATGGAAGCGCCGATCCATCCCTTTGCCGAACTGTTCAAGCAGCTGGGCTTACCCGACGATCCCACGAGTATCGATCAGTTCATCAc                                         >  3:294988/1‑149 (MQ=255)                                                                                                              ttttCAAACCAATGCCAGGCGGGCGTCGTGGACGGCTTGCCTGG‑CGCTCAG‑GAGGAACCATGGAAGCGCCGATCCATCCCTTTGCCGAACTGTTCAAGCAGCTGGGCTTACCCGACGATCCCACGAGTATCGATCAGTTCATCACCAGc                                     >  1:70410/1‑149 (MQ=255)                                                                                                                  cAAACCAATGCCAGGCGGGCGTCGTGGACGGCTTGCCTGG‑CGCTCAGTGAGGAACCATGTAAGCGCCGATCCATCCCTTTGCCGAACTGTTCa                                                                                          <  1:230333/93‑1 (MQ=255)                                                                                                                  cAAACCAATGCCAGGCGGGCGTCGTGGACGGCTTGCCTGG‑CGCTCAG‑GAGGAACCATGGAAGCGCCGATCCATCCCTTTGCCGAACTGTTCa                                                                                          >  2:230333/1‑92 (MQ=255)                                                                                                                   aaaCCAATGCCAGGCGGGCGTCGTGGACGGCTTgcctggcattggtttgaaaacatcagcacagctcgcgcacttcggcgtgcggcaccagtttcatgtactgctccatgctcatgtgaatcaggtgatcgtggtcacccgcctccagg                                  <  5:73169‑M2/149‑117 (MQ=255)                                                                                                                     aCCAATGCCAGGCGGGCGTCGTGGACGGCTTGCCTGG‑CGCTCAG‑GAGGAACCATGGAAGCGCCGATCCATCCCTTTGCCGAACTGTTCAAGCAGCTGGGCTTACCCGACGATCCCACGAGTATCGATCAGTTCATCACCAGCCATTccc                              >  4:189514/1‑149 (MQ=255)                                                                                                                       cAATGCCAGGCGGGCGTCGTGGACGGCTTgcctggcattggtttgaaaacatcagcacagctcgcgcacttcggcgtgcggcaccagtttcatgtactgctccatgctcatgtgaatcaggtgatcgtgg                                                 <  1:99337‑M2/130‑102 (MQ=255)                                                                                                                       cAATGCCAGGCGGGCGTCGTGGACGGCTTgcctggcattggtttgaaaacatcagcacagctcgcgcacttcggcgtgcggcaccagtttcatgtactgctccatgctcatgtgaatcaggtgatcgtgg                                                 >  2:99337‑M2/1‑29 (MQ=255)                                                                                                                       cAATGCCAGGCGGGCGTCGTGGACGGCTTGCCTGG‑CGCTCAG‑GAGGAACCATGGAAGCGCCGATCCATCCCTTTGCCGAACTGTTCAAGCAGCTGGGCTTACCCGACGATCCCACGa                                                            >  1:216012/1‑117 (MQ=255)                                                                                                                       cAATGCCAGGCGGGCGTCGTGGACGGCTTGCCTGG‑CGCTCAG‑GAGGAACCATGGAAGCGCCGATCCATCCCTTTGCCGAACTGTTCAAGCAGCTGGGCTTACCCGACGATCCCACGa                                                            <  2:216012/117‑1 (MQ=255)                                                                                                                        aaTGCCAGGCGGGCGTCGTGGACGGCTTgcctggcattggtttgaaaacatcagcacagctcgcgcacttcggcgtgcggcaccagtttcatgtactgctccatgctcatgtgaatcaggtgatcgtggtcacccgcctccaggtaga                              <  5:265754‑M2/148‑121 (MQ=255)                                                                                                                             cAGGCGGGCGTCGTGGACGGCTTGCCTGG‑CGCTCAG‑GAGGAACCATGGAAGCGCCGATCCATCCCTTTGCCGAACTGTTCAAGCAGCTGGGCTTACCCGACGATCCCACGAGTATCGATCAGTTCATCACCAGCCATTCCCCGCTg                         >  5:114973/1‑146 (MQ=255)                                                                                                                                gcgggcgTCGTGGACGGCTTGCCTGG‑CGCTCAG‑GAGGAACCATGGAAGCGCCGATCCATCCCTTTGCCGAACTGTTCAAGCAGCTGGGc                                                                               <  7:100962/89‑1 (MQ=255)                                                                                                                                gcgggcgTCGTGGACGGCTTGCCTGG‑CGCTCAG‑GAGGAACCATGGAAGCGCCGATCCATCCCTTTGCCGAACTGTTCAAGCAGCTGGGc                                                                               >  8:100962/1‑89 (MQ=255)                                                                                                                                gcgggcgTCGTGGACGGCTTGCCTGG‑CGCTCAG‑GAGGAACCATGGAAGCGCCGATCCATCCCTTTGCCGAACTGTTCAAGCAGCTGGGCTTACCCGACGATCCCACGAGTATCGATCAGTTCATCACCAGCCATTCCCCGCTGAAGAAc                   <  6:228854/149‑1 (MQ=255)                                                                                                                                gcgggcgTCGTGGACGGCTTGCCAGG‑CGCTCAG‑GAGGAACCATGGAAGCGCCGATCCATCCCTTTGCCGAACTGTTCAAGCAGCTGGGCTTACCCGACGATCCCACGAGTATCGATCAGTTCATCACCAGCCATTCCCCGCTGAAGAAc                   >  4:97955/1‑149 (MQ=255)                                                                                                                                             aCGGCTTGCCTGG‑CGCTCAG‑GAGGAACCATGGAAGCGCCGATCCATCCCTTTGCCGAACTGTTCAAGCAGCTGGGCTTACCCGACGATCCCACGAGTATCGATCAGTTCATCACCAGCCATTCCCCGCTGAAGAACGAAATCAAGCtgg      >  4:136658/1‑149 (MQ=255)                                                                                                                                             aCGGCTTGCCTGG‑CGCTCAG‑GAGGAACCATGGAAGCGCCGATCCATCCCTTTGCCGAACTGTTCAAGCAGCTGGGCTTACCCGACGATCCCACGAGTATCGATCAGTTCATCACCAGCCATTCCCCGCTGAAGAACGAAATCAAGCtgg      <  3:189514/149‑1 (MQ=255)                                                                                                                                                 cTTGCCTGG‑CGCTCAG‑GAGGAACCATGGAAGCGCCGATCCATCCCTTTGCCGAACTGTTCAAGCAGCTGGGCTTACCCGACGATCCCACGAGTATCGATCAGTTCATCACCAGCCATTCCCCGCTGAAGAACGAAATCAAGCTGGTGGa  >  1:234098/1‑149 (MQ=255)                                                                                                                                                   |                                                                                                                                                     AAGGCGATGTCTACCTGGAGGCGGGTGACCACGATCACCTGATTCACATGAGCATGGAGCAGTACATGAAACTGGTGCCGCACGCCGAAGTGCGCGAGCTGTGCTGATGTTTTCAAACCAATGCCAGGCGGGCGTCGTGGACGGCTTGCCTGG‑CGCTCAG‑GAGGAACCATGGAAGCGCCGATCCATCCCTTTGCCGAACTGTTCAAGCAGCTGGGCTTACCCGACGATCCCACGAGTATCGATCAGTTCATCACCAGCCATTCCCCGCTGAAGAACGAAATCAAGCTGGTGGA  >  NC_002947/251653‑251945

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.