New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	478261 =	33 (0.630)	3 (0.070)	3/206	NT	12.9%	intergenic (+9/+101)	PP_0393/cca	2‑amino‑4‑hydroxy‑6‑ hydroxymethyldihydropteridine pyrophosphokinase/multifunctional tRNA nucleotidyltransferase/2',3'‑cyclic phosphodiesterase/2' nucleotidase/phosphatase
	?	NC_002947	478356 =	15 (0.370)					intergenic (+104/+6)	PP_0393/cca	2‑amino‑4‑hydroxy‑6‑ hydroxymethyldihydropteridine pyrophosphokinase/multifunctional tRNA nucleotidyltransferase/2',3'‑cyclic phosphodiesterase/2' nucleotidase/phosphatase

CCGTGGCCTTTGAGTGGCGCGGGTTGCAGTTGACGCCCGCTTGAGCCTGTATCGGCCTCTTCGCGGGTAAACCCGCTCCTACGACGGGCTGAGCCCAACCTCTGATGTGTGCCCCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGTAGGTCTAACCGCGCTGGTAAGCCTCGAGCGCTTTCAGCCGTTCACCTTTGAGTGCTTCGCCCAGTGCCTGACCGGTCAGCCCGGCTTGCACCAACGGCTTCACATCCACCGCTCGCGCCGCCGCTGCTGCGCCTCGCAGGTAATC  >  NC_002947/478209‑478502                                                                                                                                                    |                                                                                                                                                   ccGTGGCCTTTGAGTGGCGCGGGTTGCAGTTGACGCCCGCTTGAGCCTGTATCGGCCTCTTCGCGGGTAAACCCGCTCCTACGACGGGCTGAGCCCAACCTCTGATGTGTGCCCCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCgg                                                                                                                                                    >  5:122373/1‑148 (MQ=255)                     gggTTGCAGTTGCCGCCCGCTTGAGCGTGTTTCGGCCTCTTCGCGGGTAACCCCGCTCATACCACGGGCTGAGCCCAACCTCTTATGTGTGCCCCCTTTAGGAGGGGTTTTACCCGCGAAGAGGCCGGTAGGTCTAACCGCGCTGGTaa                                                                                                                               <  6:122373/149‑1 (MQ=255)                        ttGCAGTTGACGCCCGCTTGAGCCTGTATCGGCCTCTTCGCGGGTAAACCCGCTCCTACGACGGGCTGAGCCCAACCTCTGATGTGTGCCCCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGTAGGTCTAACCGCGCTGGTAAGcc                                                                                                                            >  5:165939/1‑149 (MQ=255)                              ttGACGCCCGGTTGAGCCTGTATGGGCCTCTTGGCGGTTAACCCCGGTCCTACCACGGGGTTCGCCCAACCTCTTTTGTGGGCCCCCTTTTGGCGGGGTTTTACCCGCGAAGAGGCCGGTAGGTCTAACCGCGCTGGTAAGCCTCGa                                                                                                                        <  2:225127/147‑1 (MQ=255)                                                                  GGTAAACCCGCTCCTACGACGGGCTGAGCCCAACCTCTGATGTGTGCCCCCTGTCGGAGCGGGTTTACCCGCGAAGAGGCCGGTAGGTCTAACCGCGCTGGTAAGCCTCGAGCGCTTTCAGCCGTTCACCTTTGAGTGCTTCGCCCAGt                                                                                  >  2:70460‑M1/1‑149 (MQ=255)                                                                       ACCCGCTCCTACGACGGGCTGAGCCCAACCTCTGATGTGTGCCCCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGTAGGTCTAACCGCGCTGGTAAGCCTCGAGCGCTTTCAGCCGTTCACCTTTGAGTGCTTc                                                                                         >  8:207418‑M1/1‑137 (MQ=255)                                                                       ACCCGCTCCTACGACGGGCTGAGCCCAACCTCTGATGTGTGCCCCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGGAGGTCTAACCGCGCTGGTAAGCCTCGAGCGCTTTCAGCCGTTCACCTTTGAGTGCTTc                                                                                         <  7:207418‑M1/137‑1 (MQ=255)                                                                        CCCGCTCCTACGACGGGCTGAGCCCAACCTCTGATGTGTGCCCCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGTAGGTCTAACCGCGCTGGTAAGCCTCGAGCGCTTTCAGCCGTTCACCTTTGAGTGCTTCGCCCAGTGCCTGa                                                                            <  1:46012‑M1/149‑1 (MQ=255)                                                                        CCCGCTCCTACGACGGGCTGAGCCCAACCTCTGATGTGTGCCCCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGTAGGTCTAACCGCGCTGGTAAGCCTCGAGCGCTTTCAGCCGTTCACCTTTGAGTGCTTCGCCCAGTGCCTGa                                                                            <  7:70147‑M1/149‑1 (MQ=255)                                                                        CCCGCTCCTACGACGGGCTGAGCCCAACCTCTGATGTGTGCCCCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGTAGGTCTAACCGCGCTGGTAAGCCTCGAGCGCTTTCAGCCGTTCACCTTTGAGTGCTTCGCCCAGTGCCTGa                                                                            <  3:184527‑M1/149‑1 (MQ=255)                                                                         ccgctcctacagggggcacacatcagaggttgggctcagcccgtcgtaggagcgggtttacccgcgaagaggccgGTAGGTCTAACCGCGCTGGTAAGCCTCGAGCGCTTTCAGCCGTTCACCTTTGAGTGCTTCGCCCAGTGCCTGa                                                                            >  1:322111‑M2/76‑148 (MQ=255)                                                                         ccgctcctacagggggcacacatcagaggttgggctcagcccgtcgtaggagcgggtttacccgcgaagaggccgGTAGGTCTAACCGCGCTGGTAAGCCTCGAGCGCTTTCAGCCGTTCACCTTTGAGTGCTTCGCCCAGTGCCTGa                                                                            <  2:322111‑M2/73‑1 (MQ=255)                                                                         CCGCTCCTACGACGGGCTGAGCCCAACCTCTGATGTGTGCCCCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGTAGGTCTAACCGCGCTGGTAAGCCTCGAGCGCTTTCAGCCGTTCACCTTTGAGTGCTTCGCCCAGTGc                                                                                <  3:101158‑M1/144‑1 (MQ=255)                                                                         CCGCTCCTACGACGGGCTGAGCCCAACCTCTGATGTGTGCCCCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGTAGGTCTAACCGCGCTGGTAAGCCTCGAGCGCTTTCAGCCGTTCACCTTTGAGTGCTTCGCCCAGTGc                                                                                >  4:101158‑M1/1‑144 (MQ=255)                                                                         CCGCTCCTACGACGGGCTGAGCCCAACCTCTGATGTGTGCCCCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGTAGGTCTAACCGCGCTGGTAAGCCTCGAGCGCTTTCAGCCGTTCACCTTTGAGTGCTTCGCCCAGTGCCTGAc                                                                           <  5:256872‑M1/149‑1 (MQ=255)                                                                         CCGCTCCTACCACGGGCGTAGCCAAACGTGTGTTTTGCGCCCCGTGTTGGCGCGGGTTTACCCGCGAAGAGGCCGGTAGGTCTAACCGCGCTGGTAAGCCTCGAGCGCTTTCAGCCGTTCACCTTTGAGTGCTTCGCCCAGTGCCTGAc                                                                           >  4:116440‑M1/1‑149 (MQ=255)                                                                          CGCTCCTACGACGGGCTGAGCCCAACCTCTGATGTGTGCCCCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGTAGGTCTAACCGCGCTGGTAAGCCTCGAGCGCTTTCAGCCGTTCACCTTTGa                                                                                                <  6:251686‑M1/127‑1 (MQ=255)                                                                          CGCTCCTACGACGGGCTGAGCCCAACCTCTGATGTGTGCCCCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGTAGGTCTAACCGCGCTGGTAAGCCTCGAGCGCTTTCAGCCGTTCACCTTTGa                                                                                                >  5:251686‑M1/1‑127 (MQ=255)                                                                           gctcctacagggggcacacatcagaggttgggctcagcccgtcgtaggagcgggtttacccgcgaagaggccgGTAGGTCTAACCGCGCTGGTAAGCCTCGAGCGCTTTCAGCCGTTCACCTTTGAGTGCTTCGCCCAGTGCCTGACCg                                                                         >  5:329055‑M2/74‑149 (MQ=255)                                                                                   gacgGGCTGAGCCCAACCTCTGATGTGTGCCCCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGTAGGTCTAACCGCGCTGGTAAGCCTCGAGCGCTTTCAGCCGTTCACCTTTGAGTGCTTCGCCCAGTGCCTGACCGGTCAGccc                                                                 >  2:311935/1‑149 (MQ=255)                                                                                    acgGGCTGAGCCCAACCTCTGATGTGTGCCCCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGTAGGTCTAACCGCGCTGGTAAGCCTCGAGCGCTTTCAGCCGTTCACCTTTGAGTGCTTCGCCCAGTGCCTGACCGGTCAGCCCg                                                                <  1:311935/149‑1 (MQ=255)                                                                                      gggCTGAGCCCAACCTCTGATGTGTGCCCCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGTAGGTCTAACCGCGCTGGTAAGCCTCGAGCGCTTTCAGCCGTTCACCTTTGAGTGCTTCGCCCAGTGCCTGACCGGTCAGCCCGGc                                                              >  7:27721/1‑149 (MQ=255)                                                                                           gAGCCCAACCTCTGATGTGTGCCCCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGTAGGTCTAACCGCGATGGTAAGCCTCGAGCGTTTTCAGCCGTTCACCTTTGAGTGCTTCGCCCAGTGCCTGACCGGTCAGCCCGGCTTGCa                                                         >  5:319154/1‑149 (MQ=255)                                                                                             gCCCAACCTCTGATGTGTGCCCCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGTAGGTCTAACCGCGCTGGTAAGCCTCGAGCGCTTTCAGCCGTTCACCTTTGAGTGCTTCGCCCAGTGCCTGACCGGTCAGCCCGGCTTGCAc                                                        >  8:151195/1‑148 (MQ=255)                                                                                                cAACCTCTGATGTGTGCCCCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGTAGGTCTAACCGCGCTGGTAAGCCTCGAGCGCTTTCAGCCGTTCACCTTTGAGTGCTTCGCCCAGTGCCTGACCGGTCAGCCCGGCTTGCACCAAc                                                    <  6:165939/149‑1 (MQ=255)                                                                                                aaaCCTCTGATGTGTGCCCCCTGTCGGACCGGGTTTACCCGCGAAGAGGCCGGTAGGTCTAACCGCGCTGGTAAGCCTCGAGCGCTTTCAGCCGTTCACCTTTGAGTGCTTCGCCCAGTGCCTGACCGGTCAGCCCGGCTTGCACCAAc                                                    <  1:187887/148‑1 (MQ=255)                                                                                                   ccTCTGATGTGTGCCCCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGTAGGTCTAACCGCGCTGGTAAGCCTCGAGCGCTTTCAGCCGTTCACCTTTGAGTGCTTCGCCCAGTGCCTGACCGGTCAGCCCGGCTTGCACCAACGGc                                                 <  7:19840/149‑1 (MQ=255)                                                                                                    ctctGATGTGTGCCCCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGTAGGTCTAACCGCGCTGGTAAGCCTCGAGCGCTTTCAGCCGTTCACCTTTGAGTGCTTCGCCCAGTGCCTGACCGGTCAGCCCGGCTTGCACCAACGGCt                                                >  1:86844/1‑149 (MQ=255)                                                                                                         aTGTGTGCCCCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGTAGGTCTAACCGCGCTGGTAAGCCTCGAGCGCTTTCAGCCGTTCACCTTTGAGTGCTTCGCCCAGTGCCTGACCGGTCAGCCCGGCTTGCACCAACGGCTTcaca                                           >  3:1532/1‑149 (MQ=255)                                                                                                            tgtgCCCCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGAAGGTCTAACCGCGCTGGTAAGCCTCGAGCGCTTTCAGCCGTTAACCATTGAGTGCTTCGCCCAGTGCCTGACCGGTCAGCCCGGCTTGCACCAACGGCTTCAGATc                                         >  8:156754/1‑148 (MQ=255)                                                                                                              tgCCCCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGTAGGTCTAACCGCGCTGGTAAGCCTCGAGCGCTTTCAGCCGTTCACCTTTGAGTGCTTCGCCCAGTGCCTGACCGGTCAGCCCGGCTTGCACCAACGGCTTCACATCCAc                                      >  8:91894/1‑149 (MQ=255)                                                                                                                 ccccTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGTAGGTCTAACCGCGCTGGTAAGCCTCGAGCGCTTTCAGCCGTTCACCTTTGAGTGCTTCGCCCAGTGCCTGACCGGTCAGCCCGGCTTGCACCAACGGCTTCACATCCACCg                                    >  2:158438/1‑148 (MQ=255)                                                                                                                  cccTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGTAGGTCTAACCGCGCTGGTAAGCCTCGAGCGCTTTCAGCCGTTCACCTTTGAGTGCTTCGCCCAGTGCCTGACCGGTCAGCCCGGCTTGCACCAACGGCTTCACATCCACCGCt                                  >  4:9760/1‑149 (MQ=255)                                                                                                                       taggagcgggtttacccgcgaagaggccgGTAGGTCTAACCGCGCTGGTAAGCCTCGAGCGCTTTCAGCCGTTCACCTTTGAGTGCTTCGCCCAGTGCCTGACCGGTCAGCCCGGCTTGCACCAACGGCTTCACATCCACCGCTcgc                               <  4:184527‑M2/118‑1 (MQ=255)                                                                                                                            gcgggtttacccgcgaagaggccgGTAGGTCTAACCGCGCTGGTAAGCCTCGAGCGCTTTCAGCCGTTCACCTTTGAGTGCTTCGCCCAGTGCCTGACCGGTCAGCCCGGCTTGCACCAACGGCTTCACATCCACCGCTCGcgccgccg                        >  2:317394‑M2/25‑149 (MQ=255)                                                                                                                            gcgggtttacccgcgaagaggccgGTAGGTCTAACAGCGCTGGTAAGCCTCTAGCGCTTTCAGCCGTTCACATTTGAGTGCTTCGCCCAGTGCCTGACCGGTCAGCCAGGCTTGCACCAAAGGCTTAACATCCACCGCAAGcgccgcc                         >  8:54600‑M2/25‑148 (MQ=255)                                                                                                                                  ttaccctcgattaggccgGTAGGTCTAACCGCGCTGGTAAGCCTCGAGCGCTTTCAGCCGTTCACCTTTGAGTGCTTCG‑CCAGTGCCTGACCGGTCAGCCCGGCTTGc                                                          <  8:284702‑M2/90‑1 (MQ=255)                                                                                                                                  ttACCAGCGAAGAGGCCGGTAGGTCTAAACGCGCTCTTAAGCCTCGAGCGCTTTCAGCAGTTCACCTTTGAGTGCTTCG‑CCAGTCCCTGACCGGTCAGCCCGGCttca                                                          >  7:284702/1‑106 (MQ=255)                                                                                                                                      ccgcgaagaggccgGTAGGTCTAACCGCGCTGGTAAGCCTCGAGCGCTTTCAGCCGTTCACCTTTGCGTGCTTCGCCCAGTGCCTGACCGGTCAGACCGGCTTGCACCAACGGCTTCACATCCACCGCTCGCTCCGCCGCTGCTGCGcc              >  7:299201‑M2/15‑149 (MQ=255)                                                                                                                                      ccgcgaagaggccgGTAGGTCTAACCGCGCTGGTAAGCCTCGAGCGCTTTCAGCCGTTCACCTTTGAGTGCTTCGCCCAGTGCCTGACCGGTCAGCCCGGCTTGCACCAACGGCTTCACATCCACCGCTCGCGCCGCCGCTGCTgcgc               >  2:46696‑M2/15‑148 (MQ=255)                                                                                                                                          gaagaggccgGTAGGTCTAACCTGGCTGGTAAGCCTCGAGCGCTTTCATCCGTTCACCTTTGAGTGCTTCGCCCAGTGCCTGACCGGTCAGCCCGGATTGCACCAACGGCTTCACATCCACCGCTCGCGCCGCCGCTGCTGCGCCTCGc          <  6:329055‑M2/139‑1 (MQ=255)                                                                                                                                            agaggccgGTAGGTCTAACCGCGCTGGTAAGCCTCGAGCGCTTTCAGCCGTTCACCTTTGAGTGCTTCGCCCAGTGCCTGACCGGTCAGCCCGGCTTGCACCAACGGCTTCACATCCACCGCTCGCGCCGCCGCTGCTGCGCCTCGCAg        <  3:14726‑M2/141‑1 (MQ=255)                                                                                                                                                gccgGTAGGTCTAACCGCGCTGGTAAGCCTCGAGCGCTTTCAGCCGTTCACCTTTGAGTGCTTCGCCCAGTGCCTGACCGGTCAGCCCGGCTTGCACCAACGGCTTCACATCCACCGCTCGCGCCGCCgctgc                    <  6:28775‑M2/129‑1 (MQ=255)                                                                                                                                                 ccgGTAGGTCTAACCGCGCTGGTAAGCCTCGAGCGCTTTCAGCCGTTCACCTTTGAGTGCTTCGCCCAGTGCCTGACCGGTCAGCCCGGCTTGCACCAACGGCTTCACATCCACCGCTCGCGCCGCCGCTGCTGCGCCTCGCAGGTAAt   <  1:158438‑M2/146‑1 (MQ=255)                                                                                                                                                  cgGTAGGTCTAACCGCGCTGGTAAGCCTCGAGCGCTTTCAGCCGTTCACCTTTGAGTGCTTCGCCCAGTGCCTGCCCGGTCAGCCCGGCTTGCACCAACGGCTTCACATCCACCGCTCGCGCCGCCGCTGCTGCGCCTCGCAGGTAATc  >  7:282309‑M2/3‑149 (MQ=255)                                                                                                                                                  cgGTAGGTCTAACCGCGCTGGTAAGCCTCGAGCGCTTTCAGCCGTTCACCTTTGAGTGCTTCGCCCAGTGCCTGACCGGTCAGCCCGGCTTGCACCAACGGCTTCACATCCACCGCTCGCGCCGCCGCTGCTGCGCCTCGCAGGTAATc  >  5:146796‑M2/3‑149 (MQ=255)                                                                                                                                                    |                                                                                                                                                   CCGTGGCCTTTGAGTGGCGCGGGTTGCAGTTGACGCCCGCTTGAGCCTGTATCGGCCTCTTCGCGGGTAAACCCGCTCCTACGACGGGCTGAGCCCAACCTCTGATGTGTGCCCCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGTAGGTCTAACCGCGCTGGTAAGCCTCGAGCGCTTTCAGCCGTTCACCTTTGAGTGCTTCGCCCAGTGCCTGACCGGTCAGCCCGGCTTGCACCAACGGCTTCACATCCACCGCTCGCGCCGCCGCTGCTGCGCCTCGCAGGTAATC  >  NC_002947/478209‑478502

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.