New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	896262 =	48 (0.920)	4 (0.080)	4/256	NT	8.3%	coding (153/1191 nt)	PP_0778	group 1 family glycosyl transferase
	?	NC_002947	896342 =	42 (0.840)					coding (73/1191 nt)	PP_0778	group 1 family glycosyl transferase

CAAACCCGGGTAGCCCGGCAGCGCCCAGCCACGGCACAGCATCAGCTGCGGATCGTTGTGCACGTGCCCTTCGCCGGCCTGGCGCGGGCGCACCACCTCGACCTCATGGCCGCGTTGGCGCAA‑CCCATCACTGAGGCGGCCAAGGGTGTTGGCCACGCCATTGATCTCGGGTGGGAAGGTTTCGCTGACCAGGGTAATACGTAGGGCGGGT‑‑GTATTCATGACAAAAAGTTTCCGCCTGCCGGGTTGCGCTAATGTGACCGCCTTGTGACGTAAAGATGACGCCTGACTGCCGGCA  >  NC_002947/896196‑896490                                                                                                                                                    |                                                                                                                                                       cAAACCCGGGTAGCCCGGCAGCGCCCAGCCACGGCACAGCATCAGCTGCGGATCGTTGTGCACGTGCCCTTCGCCGGCCTGGCGCGGGCGCACCACCTCGACCTCATGGCCGCGTTGGCGCAA‑CCCATCACTGAGGCGGCCAAGGgtgt                                                                                                                                                      <  7:72430/149‑1 (MQ=255)  acccgccctatgtattaccctggtcagcgaaaccttcccacccgagatcaatggcgtggccaacaCCCTTCGCCGGCCTGGCGCGGGCGCACCACCTCGACCTCATGGCCGCGTTGGCGCAA‑CCCATCACTGAGGCGACCAAGGGTGtt                                                                                                                                                     >  2:246915‑M1/66‑149 (MQ=255)  aaaCCCGGGTAGCCCGGCAGCGCCCAGCCACGGCACAGCATCAGCTGCGGATCGTTGTGCACGTGCCCTTCGCCGGCCTGGCGCGGGCGCACCACCTCGACCTCATGGCCGCGTTGGCGCAA‑CCCATCACTGAGGCGGCCAAGGGTGtt                                                                                                                                                     >  4:231384/1‑149 (MQ=255)   aaCCCGGGTAGCCCGGCAGCGCCCAGCCACGGCACAGCATCAGCTGCGGATCGTTGTGCACGTGCCCTTCGCCGGCCTGGCGCGGGCGCACCACCTCGACCTCATGGCCGCGTTGGCGCAA‑CCCATCACTGAGGCGGCCAAGGGTGTTg                                                                                                                                                    <  1:290590/149‑1 (MQ=255)      ccGGGTAGCCCGGCAGCGCCCAGCCACGGCACAGCATCAGCTGCGGATCGTTGTGCACGTGCCCTTCGCCGGCCTGGCGCGGGCGCACCACCTCGACCTCATGGCCGCGTTGGCGCAA‑CCCATCACTGAGGCGGCCAAGGGTGTTGGcc                                                                                                                                                 >  8:126279/1‑149 (MQ=255)        gggTAGCCCGGCAGCGCCCAGCCACGGCACAGCATCAGCTGCGGATCGTTGTGCACGTGCCCTTCGCCGGCCTGGCGCGGGCGCACCACCTCGACCTCATGGCCGCGTTGGCGCAA‑CCCATCACTGAGGCGGCCAAGGGTGTTGGCCAc                                                                                                                                               <  5:101282/149‑1 (MQ=255)                cGGCAGCGCCCAGCCACGGCACAGCATCAGCTGCGGATCGTTGTGCACGTGCCCTTCGCCGGCCTGGCGCGGGCGCACCACCTCGACCTCATGGCCGCGTTGGCGCAA‑CCCATCACTGAGGCGGCCAAGGGTGTTGGCCACGCCATTGa                                                                                                                                       >  4:235058/1‑149 (MQ=255)                  gCAGCGCCCAGCCACGGCACAGCATCAGCTGCGGATCGTTGTGCACGTGCCCTTCGCCGGCCTGGCGCGGGCGCACCACCTCGACCTCATGGCCGCGTTGGCGCAA‑CCCATCACTGAGGCGGCCAAGGGTGTTGGCCACGCCATTGAtc                                                                                                                                     <  1:153501/149‑1 (MQ=255)                     gcgcCCAGCCACGGCACAGCATCAGCTGCGGATCGTTGTGCACGTGCCCTTCGCCGGCCTGGCGCGGGCGCACCACCTCGACCTCATGGCCGCGTTGGCGCAA‑CCCATCACTGAGGCGGCCAAGGGTGTTGGCCACGCCATTGATCTCg                                                                                                                                  <  4:218607/149‑1 (MQ=255)                      cgcCCAGCCACGGCACAGCATCAGCTGCGGATCGTTGTGCACGTGCCCTTCGCCGGCCTGGCGCGGGCGCACCACCTCGACCTCATGGCCGCGTTGGCGCAA‑CCCATCACTGAGGCGGCCAAGGGTGTTGGCCACGCCATTGATCTCgg                                                                                                                                 <  8:233292/149‑1 (MQ=255)                       gcCCAGCCACGGCACAGCGTCAGCTGCGGATCGTTGTGCACGTGCCCTTCGCCGGCCTGGCGCGGGCGCACCACCTCGACCTCATGGCCGCGTTGGCGCAA‑CCCATCACTGAGGCGGCCAAGGGTGTTGGCCACGCCATTGATCTCggg                                                                                                                                >  2:323466/1‑149 (MQ=255)                       gcCCAGCCACGGCACAGCATCAGCTGCGGATCGTTGTGCACGTGCCCTTCGCCGGCCTGGCGCGGGCGCACCACCTCGACCTCATGGCCGCGTTGGCGCAA‑CCCATCACTGAGGCGGCCAAGGGTGTTGGCCACGCCATTGATCTCggg                                                                                                                                <  3:231384/149‑1 (MQ=255)                        cccAGCCACGGCACAGCATCAGCTGCGGATCGTTGTGCACGTGCCCTTCGCCGGCCTGGCGCGGGCGCACCACCTCGACCTCATGGCCGCGTTGGCGCAA‑CCCATCACTGAGGCGGCCAAGGGTGTTGGCCACGCCATTGATCTCGGGt                                                                                                                               <  4:244296/149‑1 (MQ=255)                        cccAGCCACGGCACAGCATCAGCTGCGGATCGTTGTGCACGTGCCCTTCGCCGGCCTGGCGCGGGCGCACCACCTCGACCTCATGGCCGCGTTGGCGCAA‑CCCATCACTGAGGCGGCCAAGGGTGTTGGCCACGCCATTGATCTCGGGt                                                                                                                               <  2:40054/149‑1 (MQ=255)                         ccAGCCACGGCACAGCATCAGCTGCGGATCGTTGTGCACGTGCCCTTCGCCGGCCTGGCGCGGGCGCACCACCTCGACCTCATGGCCGCGTTGGCGCAA‑CCCATCACTGAGGCGGCCAAGGGTGTTGGCCACGCCATTGATCTCGGGTg                                                                                                                              <  6:251272/149‑1 (MQ=255)                              cACGGCACAGCATCAGCTGCGGATCGTTGTGCACGTGCCCTTCGCCGGCCTGGCGCGGGCGGACCACCTCGACCTCATGGCCGCGTTGGCGCAACCCCATCACTGAGGCGGCCAAGGGTGTTGGCCACGCCATTGATCTCGGGTGGGaa                                                                                                                          <  1:248501/149‑1 (MQ=255)                                  gCACAGCATCAGCTGCGGATCGTTGTGCACGTGCCCTTCGCCGGCCTGGCGCGGGCGCACCACCTCGACCTCATGGCCGCGTTGGCGCAA‑CCCATCACTGAGGCGGCCAAGGGTGTTGGCCACGCCATTGATCTCGGGTGGGAAGGttt                                                                                                                     <  4:141208/149‑1 (MQ=255)                                    acaGCATCAGCTGCGGATCGTTGTGCACGTGCCCTTCGCCGGCCTGGCGCGGGCGCACCACCTCGACCTCATGGCCGCGTTGGCGCAA‑CCCATCACTGAGGCGGCCAAGGGTGTTGGCCACGCCATTGATCTCGGGTGGGAAGGTTTCg                                                                                                                   <  7:126279/149‑1 (MQ=255)                                                               cGTGCCCTTCGCCGGCCTGGCGCGGGCGCACCACCTCGACCTCATGGCCGCGTTGGCGCAA‑CCCATCACTGAGGCGGCCAAGGGTGTTGGCCACGCCATTGATCTCGGGTGGGAAGGTTTCGCTGACCAGGGTAATACGTAGGGCGGgt                                                                                        <  7:103798/149‑1 (MQ=255)                                                                gTGCCCTTCGCCGGCCTGGCGCGGGCGCACCACCTCGACCTCATGGCCGCGTTGGCGCAA‑CCCATCACTGAGGCGGCCAAGGGTGTTGGCCACGCCATTGATCTCGGGTGGGAAGGTTTCGCTGACCAgg                                                                                                          >  3:249316/1‑130 (MQ=255)                                                                gTGCCCTTCGCCGGCCTGGCGCGGGCGCACCACCTCGACCTCATGGCCGCGTTGGCGCAA‑CCCATCACTGAGGCGGCCAAGGGTGTTGGCCACGCCATTGATCTCGGGTGGGAAGGTTTCGCTGACCAgg                                                                                                          <  4:249316/130‑1 (MQ=255)                                                                aacacccttggtcgcctcagtgatgggttgcgccaacgcggccatgaggtcgaggtggtgcgcccgcgccaggccggcgaagggTGTTGGCCACGCCATTGATCTCGGGTGGGAAGGTTTCGCTGACCAGGGTAATACATAGGGCGGgt                                                                                        >  2:246915‑M2/85‑149 (MQ=255)                                                                  gCCCTTCGCCGGCCTGGCGCGGGCGCACCACCTCGACCTCATGGCCGCGTTGGCGCAA‑CCCATCACTGAGGCGGCCAAGGGTGTTGGCCACGCCATTGATCTCGGGTGGGAAGGTTTCGCTGACCAGGGTAATACGTAGGGCGGGT‑‑GTa                                                                                   <  3:269369/149‑1 (MQ=255)                                                                     ccttggccgcctcagtgatgggttgcgccaacgcggccatgaggtcgaggtggtgcgcccgcgccaggccggcgaagggTGTTGGCCACGCCATTGATCTCGGGTGGGAAGGTTTCGCTGACCAGGGTAATACGTAGGGCGGGT‑‑GTAt                                                                                  >  2:263877‑M2/80‑148 (MQ=255)                                                                        cGCCGGCCTGGCGCGGGCGCACCACCTCGACCTCATGGCCGCGTTGGCGCAA‑CCCATCACTGAGGCGGCCAAGGGTGTTGGCCACGCCATTGATCTCGGGTTGGAAGGTTTCGCTGACCAGGGTAATACGTAGGGCGGGT‑‑GTATTCAt                                                                              <  5:150482/148‑1 (MQ=255)                                                                          gtcgcctcagtgatgggttgcgccaacgcggccatgaggtcgaggtggtgcgcccgcgccaggccggcgaagggTGTTGGCCACGCCATTGATCTCGGGTGGGAAGGTTTCGCTGACCAGGGTAATACATAGGGCGGGT‑‑GTATTCATGa                                                                            <  1:246915‑M2/75‑1 (MQ=255)                                                                               cTGGCGCGGGCGCACCACCTCGACCTCATGGCCGCGTTGGCGCAA‑CCCATCACTGAGGCGGCCAAGGGTGTTGGCCACGCCATTGATCTCGGGTGGGAAGGTTTCGCTGACCAGGGTAATACGTAGGGCGGGT‑‑GTATTCATGACaaaaa                                                                      <  7:217412/149‑1 (MQ=255)                                                                                tGGCGCGGGCGCACCACCTCGACCTCATGGCCGCGTTGGCGCAA‑CCCATCACTGAGGCGGCCAAGGGTGTTGGCCACGCCATTGATCTCGGGTGGGAAGGTTTCGCTGACCAGGGTAATACGTAGGGCgg                                                                                          <  1:249230/130‑1 (MQ=255)                                                                                tGGCGCGGGCGCACCACCTCGACCTCATGGCCGCGTTGGCGCAA‑CCCATCACTGAGGCGGCCAAGGGTGTTGGCCACGCCATTGATCTCGGGTGGGAAGGTTTCGCTGACCAGGGTAATACGTAGGGCgg                                                                                          >  2:249230/1‑130 (MQ=255)                                                                                        gcgcACCACCTCGACCTCATGGCCGCGTTGGCGCAA‑CCCATCACTGAGGCGGCCAAGGGTGTTGGCCACGCCATTGATCTCGGGTGGGAAGGTTTCg                                                                                                                   <  3:251198/97‑1 (MQ=255)                                                                                        gcgcACCACCTCGACCTCATGGCCGCGTTGGCGCAA‑CCCATCACTGAGGCGGCCAAGGGTGTTGGCCACGCCATTGATCTCGGGTGGGAAGGTTTCg                                                                                                                   >  4:251198/1‑97 (MQ=255)                                                                                          gcACCACCTCGACCTCATGGCCGCGTTGGCGCAA‑CCCATCACTGAGGCGGCCAAGGGTGTTGGCCACGCCATTGATCTCGGGTGGGAAGGTTTCGCTGACCAGGGTAATACGTAGGGCGGGT‑‑GTATTCATGACAAAAAGTTTCCGCCTg                                                           >  7:268271/1‑149 (MQ=255)                                                                                          gcACCACCTCGACCTCATGGCCGCGTTGGCGCAA‑CCCAACACTGAGGCGGCCAAGGGTGTTGGCCACGCCATTGATCTCGGGTGGGAAGGTTTCGCTGACCAGGGTAATACGTAGGGCGGGT‑‑GTAGTCATGACAAAAAGTTTCCGCCTg                                                           >  6:186018/1‑149 (MQ=255)                                                                                            accaccTCGACCTCATGGCCGCGTTGGCGCAA‑CCCATCACTGAGGCGGCCAAGGGTGTTGGCCACGCCATTGATCTCGGGTGGGAAGGTTTCGCTGACCAGGGTAATAc                                                                                                   <  8:15268/109‑1 (MQ=255)                                                                                            accaccTCGACCTCATGGCCGCGTTGGCGCAA‑CCCATCACTGAGGCGGCCAAGGGTGTTGGCCACGCCATTGATCTCGGGTGGGAAGGTTTCGCTGACCAGGGTAATAc                                                                                                   >  7:15268/1‑109 (MQ=255)                                                                                                      ccTCATGGCCGCGTTGGCGCAA‑CCCATCACTGAGGCGGCCAAGGGTGTTGGCCACGCCATTGATCTCGGGTGGGAAGGTTTCGCTGACCAgg                                                                                                          <  5:140503/92‑1 (MQ=255)                                                                                                      ccTCATGGCCGCGTTGGCGCAA‑CCCATCACTGAGGCGGCCAAGGGTGTTGGCCACGCCATTGATCTCGGGTGGGAAGGTTTCGCTGACCAgg                                                                                                          >  6:140503/1‑92 (MQ=255)                                                                                                          aTGGCCGCGTTGGCGCAA‑CCCATCACTGAGGCGGCCAAGGGTGTTGGCCACGCCATTGATCTCGGGTGGGAAGGTTTCGCTGACCAGGGTAATACGTAGGGCGGGT‑‑GTATTCATGACAAAAAGTTTCCGCCTGCCGGGTTGCGCTAAt                                            <  3:235058/148‑1 (MQ=255)                                                                                                           tGGCCGCGTTGGCGCAA‑CCCATCACTGAGGCGGCCAAGGGTGTTGGCCACGCCATTGATCTCGGGTGGGAAGGTTTCGCTGACCAGGGTAATACGTAGGGCGGGT‑‑GTATTCATGACAAAAAGTTTCCGCCTGCCGGGTTGCGCTAAtgt                                          <  1:323466/149‑1 (MQ=255)                                                                                                               cgcgTTGGCGCAA‑CCCATCACTGAGGCGGCCAAGGGTGTTGGCCACGCCATTGATCTCGGGTGGGAAGGTTTCGCTGACCAGGGTAATACGTAGGGCGGGT‑‑GTATTCATGACAAAAAGTTTCCGCCTGCCGGGTTGCGCTAATGTGAcc                                      >  7:67922/1‑149 (MQ=255)                                                                                                                     ggCGCAA‑CCCAACACTGAGGCGGCCAAGGGTGTTGGCCACGCCATTGATCTCGGGTGGGAAGGTTTCGCTGACCAGGGTAATACGTAGGGCGGGT‑‑GTATTCATGACAAAAAGTTTCCGCCTGCCGGGTTGCGCTAATGTGACCGCCtt                                 <  5:186018/148‑1 (MQ=255)                                                                                                                      gcgcAA‑CCCATCACTGAGGCGGCCAAGGGTGTTGGCCACGCCATTGATCTCGGGTGGGAAGGTTTCGCTGACCAGGGAAATACGTAGGGCGGGTGGGGAGGCATGACAAAAAGTTTCCGCCTGCCGGGTAGCGCTAATGTGACCGCCtt                                 >  1:105227/1‑149 (MQ=255)                                                                                                                        gcAA‑CCCATCACTGAGGCGGCCAAGGGTGTTGGCCACGCCATTGATCTCGGGTGGGAAGGTTTCGCTGACCAGGGTAATACGTAGGGCGGGT‑‑GTATTCATGACAAAAAGTTTCCGCCTGCCGGGTTGCGCTAATGTGACCGCCTTGTGa                             >  1:68555/1‑149 (MQ=255)                                                                                                                         cAA‑CCCATCACTGAGGCGGCCAAGGGTGTTGGCCACGCCATTGATCTCGGGTGGGAAGGTTTCGCTGACCAGGGTAATACGTAGGGCGGGT‑‑GTATTCATGACAAAAAGTTTCCGCCTGCCGGGTTGCGCTAATGTGACCGCCTTGTGAc                            <  8:67922/149‑1 (MQ=255)                                                                                                                              ccATCACTGAGGCGGCCAAGGGTGTTGGCCACGCCATTGATCTCGGGTGGGAAGGTTTCGCTGACCAGGGTAATACGTAGGGCGGGT‑‑GTATTCATGACAAAAAGTTTCCGCCTGCCGGGtt                                                    <  4:39837/121‑1 (MQ=255)                                                                                                                              ccATCACTGAGGCGGCCAAGGGTGTTGGCCACGCCATTGATCTCGGGTGGGAAGGTTTCGCTGACCAGGGTAATACGTAGGGCGGGT‑‑GTATTCATGACAAAAAGTTTCCGCCTGCCGGGtt                                                    >  3:39837/1‑121 (MQ=255)                                                                                                                               cATCACTGAGGCGGCCAAGGGTGTTGGCCACGCCATTGATCTCGGGTGGGAAGGTTTCGCTGACCAGGGTAATACGTAGGGCGGGT‑‑GTATTCATGACAAAAAGTTTCCGCCTGCCGGGTTGCGCTAATGTGACCGCCTtgtg                              >  2:250947/1‑142 (MQ=255)                                                                                                                               cATCACTGAGGCGGCCAAGGGTGTTGGCCACGCCATTGATCTCGGGTGGGAAGGTTTCGCTGACCAGGGTAATACGTAGGGCGGGT‑‑GTATTCATGACAAAAAGTTTCCGCCTGCCGGGTTGCGCTAATGTGACCGCCTtgtg                              <  1:250947/142‑1 (MQ=255)                                                                                                                                  cgccaggccggcgaagggTGTTGGCCACGCCATTGATCTCGGGTGGGAAGGTTTCGCTGACCAGGGTAATACGTAGGGCGGGT‑‑GTATTCATGACAAAAAGTTTCCGCCTGCCGGGTTGCGCTAATGTGACCGCCTTGTGACGTAAAGAt                    <  1:263877‑M2/131‑1 (MQ=255)                                                                                                                                   aCTGAGGCGGCCAAGGGTGTTGGCCACGCCATTGATCTCGGGTGGGAAGGTTTCGCTGACCAGGGTAATACGTAGGGCGGGT‑‑GTATTCATGACAAAAAGTTTCCGCCTGCCGGGTTGCGCTAATGTGACCGCCTTGTGACGTAAAGAt                    >  2:154777/1‑148 (MQ=255)                                                                                                                                              cAAGGGTGTTGGCCACGCCATTGATCTCGGGTGGGAAGGTTTCGCTGACCAGGGTAATACGTAGGGCGGGT‑‑GTATTCATGACAAAAAGTTTCCGCCTGCCGGGTTGCGCTAATGTGACCGCCTTGTGACGTAAAGATGACGCCTGACTg        >  2:157898/1‑149 (MQ=255)                                                                                                                                                 gggTGTTGGCCACACCATTGATCTCGGGTGGGAAGGTTTCGCTGACCAGGGTAATACGTAGGGCGGGT‑‑GTATTCATGACAAAAAGTTTCCGCCTGCCGGGTTGCGCTAATGTGACCGCCTTGTGACGTAAAGATGACGCCTGACTGCCg     >  2:309679‑M2/4‑149 (MQ=255)                                                                                                                                                    tgtTGGCCACGCCATTGATCTCGGGTGGGAAGGTTTCGCTGACCAGGGTAATACGTAGGGCGGGT‑‑GTATTCATGACAAAAAGTTTCCGCCTGCCGGGTTGCGCTAATGTGACCGCCTTGTGACGTAAAGATGACGCCTGACTGCCGGCa  <  1:154777/149‑1 (MQ=255)                                                                                                                                                    |                                                                                                                                                       CAAACCCGGGTAGCCCGGCAGCGCCCAGCCACGGCACAGCATCAGCTGCGGATCGTTGTGCACGTGCCCTTCGCCGGCCTGGCGCGGGCGCACCACCTCGACCTCATGGCCGCGTTGGCGCAA‑CCCATCACTGAGGCGGCCAAGGGTGTTGGCCACGCCATTGATCTCGGGTGGGAAGGTTTCGCTGACCAGGGTAATACGTAGGGCGGGT‑‑GTATTCATGACAAAAAGTTTCCGCCTGCCGGGTTGCGCTAATGTGACCGCCTTGTGACGTAAAGATGACGCCTGACTGCCGGCA  >  NC_002947/896196‑896490

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.