New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 981623	36 (0.690)	6 (0.120)	6/254	NT	13.7%	coding (500/1863 nt)	hscA	DnaK‑like molecular chaperone
	?	NC_002947	= 981649	41 (0.830)					coding (526/1863 nt)	hscA	DnaK‑like molecular chaperone

AAGTGTCTGCCGACATCCTGAAGGTGTTGCGCGAACGGGCCGAAGCCACCTTGGGTGGCGAGCTGGTAGGCGCGGTGATCACCGTGCCTGCCTATTTCGATGACGCCCAACGTCAGGCTACCAAAGACGCAGCGCGTCTGGCCGGCCTGAACGTGCTGCGCCTGCTCAACGAACCGACT‑GCGGCCGCCGTAGCCTACGGCCTGGACCAGAACGCCGAAGGCGTGGTGGCCATCTATGATCTGGGCGGCGGTACTTTCGATATTTCCATCCTGCGCCTGACCGCTGGCG  >  NC_002947/981506‑981793                                                                                                                                                |                                                                                                                                                  aaGTGTCTGCCGACATCCTGAAGGTGTTGCGCGAACGGGCCGAAGCCACCTTGGGTGGCGAGCTGGTAGGCGCGGTGATCACCGTGCCTGCCTATTTCGATGACGCCCAACGTCAGGCTACCAAAGACGCAGCGCGTCTGGCCGgcctg                                                                                                                                              >  4:32149‑M2/1‑144 (MQ=255)          ccGACATCCTGAAGGTGTTGCGCGAACGGGCCGAAGCCACCTTGGGTGGCGAGCTGGTAGGCGCGGTGATCACCGTGCCTGCCTATTTCGATGACGCCCAACGTCAGGCTACCAAAGACGCAGCGCGTCTGGCCGGCCTGAACGtg                                                                                                                                        <  3:207735/146‑1 (MQ=255)           cGACATCCTGAAGGTGTTGCGCGAACGGGCCGAAGCCACCTTGGGTGGCGAGCTGGTAGGCGCGGTGATCACCGTGCCTGCCTATTTCGATGACGCCCAACGTCACAAAACCAAAGACGCAGCGCGTCTGGCCGGCCTGAACGtgctgc                                                                                                                                    >  1:272051/1‑149 (MQ=255)                  cTGAAGGTGTTGCGCGAACGGGCCGAAGCCACCTTGGGTGGCGAGCTGGTAGGCGCGGTGATCACCGTGCCTGCCTATTTCGATGACGCCCAACGTCAGGCTACCAAAGACGCAGCGCGTCTGGCCGGCCTGAACGTGCTGCGCCTGc                                                                                                                              >  7:104467/1‑148 (MQ=255)                  cTGAAGGTGTTGCGCGAACGGGCCGAAGCCACCTTGGGTGGCGAGCTGGTAGGCGCGGTGATCACCGTGCCTGCCTATTTCGATGACGCCCAACGTCAGGCTACCAAAGACGCAGCGCGTCTGGCCGGCCTGAACGTGCTGCACCTGCt                                                                                                                             <  3:92658/149‑1 (MQ=255)                   tGAAGGTGTTGCGCGAACGGGCCGAAGCCACCTTGGGTGGCGAGCTGGTAGGCGCGGTGATCACCGTGCCTGCCTATTTCGATGACGCCCAACGTCAGGCTACCAAAGACGCAGCGCGTCTGGCCGGCCTGAACGTGCTGCGCCTGc                                                                                                                              >  3:132020/1‑147 (MQ=255)                   tGAAGGTGTTGCGCGAACGGGCCGAAGCCACCTTGGGTGGCGAGCTGGTAGGCGCGGTGATCACCGTGCCTGCCTATTTCGATGACGCCCAACGTCAGGCTACCAAAGACGCAGCGCGTCTGGCCGGCCTGAACGTGCTGCGCCTGc                                                                                                                              <  4:132020/147‑1 (MQ=255)                   tGAAGGTGTTGCGCGAACGGGCCGAAGCCACCTTGGGTGGCGAGCTGGTAGGCGCGGTGATCACCGTGCCTGCCTATTTCGATGACGCCCAACGTCAGGCTACCAAAGACGCAGCGCGTCTGGCCGGCCTGAACGTGCTGCGCCTGCt                                                                                                                             >  7:281633/1‑148 (MQ=255)                     aaGGTGTTGCGCGAACGGGCCGAAGCCACCTTGGGTGGCGAGCTGGTAGGCGCGGTGATCACCGTGCCTGCCTATTTCGATGACGCCCAACGTCAGGCTACCAAAGACGCAGCGCGTCTGGCCGGCCTGAACGTGCTGCGCCTGCTCaa                                                                                                                          <  2:88585/149‑1 (MQ=255)                                    cGGGCCGAAGCCACCTTGGGTGGCGAGCTGGTAGGCGCGGTGATCACCGTGCCTGCCTATTTCGATGACGCCCAACGTCAGGCTACCAAAGACGCAGCGCGTCTGGCCGGCCTGAACGTGCTGCGCCTGCTCAACGAACCGACT‑GCGgc                                                                                                          >  2:250907/1‑149 (MQ=255)                                            aGCCACCTTGGGTGGCGAGCTGGTAGGAGCGGTGATCACCGTGCCTGCCTATTTCGATGACGCCCAACGTCAGGCTACCAAAGACGCAGCGCGTCTTGCCGGCCTGAACGTGCTGCGCATGCTAAACGAAACGACT‑GCGGCCGCCGTAg                                                                                                  >  1:180738/1‑149 (MQ=255)                                               cACCTTGGGTGGCGAGCTGTTAGGCGCGGTGATCACCGTGCCTGCCTATTTCGATGACGCCCAACGTCAGGCTACCAAAGACGCAGCGCGTCTGGCCGGCCTGAACGTGCTGCGCCTGCTCAACGAACCGACt                                                                                                                <  4:116435/133‑1 (MQ=255)                                               cACCTTGGGTGGCGAGCTGATAGGCGCGGTGATCACCGTGCCTGCCTATTTCGATGACGCCCAACGTCAGGCTACCAAAGACGCAGCGCGTCTGGCCGGCCTGAACGTGCTGCGCCTGCTCAACGAACCGACt                                                                                                                >  3:116435/1‑133 (MQ=255)                                                  cTTGGGTGGCGAGCTGGTAGGCGCGGTGATCACCGTGCCTGCCTATTTCGATGACGCCCAACGTCAGGCTACCAAAGACGCAGCGCGTCTGGCCGGCCTGAACGTGCTGCGCCTGCTCAACGAACCGACT‑GCGGCCGCCGTAGCCTACg                                                                                            >  2:133988/1‑149 (MQ=255)                                                  cTTGGGTGGCGAGCTGGTAGGCGCGGTGATCACCGTGCCTGCCTATTTCGATGACGCCCAACGTCAGGCTACCAAAGACGCAGCGCGTCTGGCCGGCCTGAACGTGCTGCGCCTGCTCAACGAACCGACT‑GCGGCCGCCGTAGCCTACg                                                                                            >  7:205624/1‑149 (MQ=255)                                                     gggTGGCGAGCTGGTAGGCGCGGTGATCACCGTGCCTGCCTATTTCGATGACGCCCAACGTCAGGCTACCAAAGACGCAGCGCGTCTGGCCGGCCTGAACGTGCTGCGCCTGCTCAACGAACCGACT‑GCGGCCGCCGTAGCCTACGGc                                                                                          <  8:104467/148‑1 (MQ=255)                                                        tGGCGAGCTGGTAGGCGCGGTGATCACCGTGCCTGCCTATTTCGATGACGCCCAACGTCAGGCTACCAAAGACGCAGCGCGTCTGGCCGGCCTGAACGTGCTGCGCCTGCTCAACGAACCGACT‑GCGGCCGCCGTAGCCTACGGCCTgg                                                                                      <  1:139841/149‑1 (MQ=255)                                                                  gTAGGCGCGGTGATCACCGTGCCTGCCTATTTCGATGACGCCCAACGTCAGGCTACCAAAGACGCAGCGCGTCTGGCCGGCCTGAACGTGCTGCGCCTGCTCAACGAACCGACT‑GCGGCCGCCGTAGCCTACGGCCTGGACCAGAACGc                                                                            >  3:29419/1‑149 (MQ=255)                                                                      gcgcGGTGATCACCGTGCCTGCCTATTTCGATGACGCCCAACGTCAGGCTACCAAAGACGCAGCGCGTCTGGCCGGCCTGAACGTGCTGCGCCTGCTCAACGAACCGACT‑GCGGCCGCCGTAGCCTACGGCCTGGACCAGAACGCCGaa                                                                        <  1:133988/149‑1 (MQ=255)                                                                          ggTGATCACCGTGCCTGCCTATTTCGATGACGCCCAACGTCAGGCTACCAAAGACGCAGCGCGTCTGGCCGGCCTGAACGTGCTGCGCCTGCTCAACGAACCGACT‑GCGGCCGCCGTAGCCTACGGCCTGGACCAGAACGCCGAAGGCg                                                                    <  6:29279/149‑1 (MQ=255)                                                                                          gcctATTTCGATGACGCCCAACGTCAGGCTACCAAAGACGCAGCGCGTCTGGCCGGCCTGAACGTGCTGCGCCTGCTCAACGAACCGACT‑GCGGCCGCCGTAGCCTACGGCCTGGACCAGAACGCCGAAGGCGTGGTGGCCATCTATGa                                                    >  3:67852/1‑149 (MQ=255)                                                                                            ctATTTCGATGACGCCCAACGTCAGGCTACCAAAGACGCAGCGCGTCTGGCCGGCCTGAACGTGCTGCGCCTGCTCAACGAACCGACT‑GCGGCCGCCGTAGCCTACGGCCTGGACCAGAACGCCGAAGGCGTGGTGGCCATCTATGATc                                                  >  7:55093/1‑149 (MQ=255)                                                                                             tATTTCGATGACGCCCAACGTCAGGCTACCAAAGACGCAGCGCGTCTGGCCGGCCTGAACGTGCTGCGCCTGCTCAACGAACCGACT‑GCGGCCGCCGTAGCCTACGGCCTGGACCAGAACGCCGAAGGCGTGGTGGCCATCTATGATCt                                                 >  1:277782/1‑149 (MQ=255)                                                                                               tttCGATGACGCCCAACGTCAGGCTACCAAAGACGCAGCGCGTCTGGCCGGCCTGAACGTGCTGCGCCTGCTCAACGAACCGACT‑GCGGCCGCCGTAGCCTACGGCCTGGACCAGAACGCCGAAGGCGTGGTGGCCATCTATGATCTgg                                               >  3:213572/1‑149 (MQ=255)                                                                                                ttCGATGACGCCCAACGTCAGGCTACCAAAGACGCAGCGCGTCTGGCCGGCCTGAACGTGCTGCGCCTGCTCAACGAACCGACT‑GCGGCCGCCGTAGCCTACGGCCTGGACCAGAACGCCGAAGGCGTGGTGGCCATCTATGATCTggg                                              >  5:281352/1‑149 (MQ=255)                                                                                                   gATGACGCCCAACGTCAGGCTACCAAAGACGCAGCGCGTCTGGCCGGCCTGAACGTGCTGCGCCTGCTCAACGAACCGACT‑GCGGCCGCCGTAGCCTACGGCCTGGACCAGAACGCCGAAGGCGTGGTGGCCATCTATGATCTGggcgg                                           >  4:292527/1‑149 (MQ=255)                                                                                                     tGACGCCCAACGTCAGGCTACCAAAGACGCAGCGCGTCTGGCCGGCCTGAACGTGCTGCGCCTGCTCAACGAACCGACT‑GCGGCCGCCGTAGCCTACGGCCTGGACCAGAACGCCGAAGGCGTGGTGGCCATCTATGATCTGGgcggcg                                         >  3:72385/1‑149 (MQ=255)                                                                                                     tGACGCCCAACGTCAGGCTACCAAAGACGCAGCGCGTCTGGCCGGCCTGAACGTGCTGCGCCTGCTCAACGAACCGACT‑GCGGCCGCCGTAGCCTACGGCCTGGACCAGAACGCCGAAGGCGTGGTGGCCATCTATGATCTGGgcggcg                                         >  3:158811/1‑149 (MQ=255)                                                                                                         gCCCAACGTCAGGCTACCAAAGACGCAGCGCGTCTGGCCGGCCTGAACGTGCTGCGCCTGCTCAACGAACCGACT‑GCGGCCGCCGTAGCCTACGGCCTGGACCAGAACGCCGAAGGCGTGGTGGCCATCTATGATCTGGGCGGCGGTAc                                     >  8:277130/1‑149 (MQ=255)                                                                                                         gCCCAACGTCAGGCTACCAAAGACGCAGCGCGTCTGGCCGGCCTGAACGTGCTGCGCCTGCTCAACGAACCGACT‑GCGGCCGCCGTAGCCTACGGCCTGGACCAGAACGCCGAAGGCGTGGTGGCCATCTATGATCTGGGCGGCGGTAc                                     >  6:6695/1‑149 (MQ=255)                                                                                                           ccAACGTCAGGCTACCAAAGACGCAGCGCGTCTGGCCGgcctgacgttgggcgtcatcgaaataggcaggcacggtgatcaccgcgcctaccagctcgccacccaaggtggcttcggcccgttcgcgcaacaccttcaggatgtcgg                                      <  7:158283‑M2/147‑110 (MQ=255)                                                                                                            cAACGTCAGGCTACCAAAGACGCAGCGCGTCTGGCCGGCCTGAACGTGCTGCGCCTGCTCAACGAACCGACT‑GCGGCCGCCGTAGCCTACGGCCTGGACCAGAACGCCGAAGGCGTGGTGGCCATCTATGATCTGGGCGGCGGTACttt                                  <  3:111032/149‑1 (MQ=255)                                                                                                             aaCGTCAGGCTACCAAAGACGCAGCGCGTCTGGCCGgcctgacgttgggcgtcatcgaaataggcaggcacggtgatcaccgcgcctaccagctcgccacccaaggtggcttcggcccgttcgcgcaacaccttcaggatgtcggcaga                                  <  2:253449‑M2/149‑114 (MQ=255)                                                                                                             aaCGTCAGGCTACCAAAGACGCAGCGCGTCTGGCCGGCCTGAACGTGCTGCGCCTGCTCAACGAACCGACT‑GCGGCCGCCGTAGCCTACGGCCTGGACCAGAACGCCGAAGGCGTGGTGGCCATCTATGATCTGGGCGGCGGTACTTTc                                 <  4:213572/149‑1 (MQ=255)                                                                                                               cGTCAGGCTACCAAAGACGCAGCGCGTCTGGCCGGCCTGAACGTGCTGCGCCTGCTCAACGAACCGACT‑GCGGCCGCCGTAGCCTACGGCCTGGACCAGAACGCCGAAGGCGTGGTGGCCATCTATGATCTGGGCGGCGGTACTTTCGa                               <  2:34297/149‑1 (MQ=255)                                                                                                                  cAGGCTACCAAAGACGCAGCGCGTCTGGCCGgcctgacgttgggcgtcatcgaaataggcaggcacggtgatcaccgcgcctaccagctcgccacccaaggtggcttcggcccgttcgcgcaacaccttcaggatgtcggcagacactt                             <  4:36125‑M2/149‑119 (MQ=255)                                                                                                                     gCTACCAAAGACGCAGCGCGTCTGGCCGgcctgacgttgggcgtcatcgaaataggcaggcacggtgatcaccgcgcctaccagctcgccacccaaggtggcttctgcccgttcgcgcaacaccttcaggatgtcggcagacacttcca                          <  6:59842‑M2/149‑122 (MQ=255)                                                                                                                         ccAAAGACGCAGCGCGTCTGGCCGGCCTGAACGTGCTGCGCCTGCTCAACGAACCGACT‑GCGGCCGCCGTAGCCTACGGCCTGGACCAGAACGCCGAAGGCGTGGTGGCCATCTATGATCTGGGCGGCGGTACTTTCGATATTTCCa                       <  8:281633/147‑1 (MQ=255)                                                                                                                         ccAAAGACGCAGCGCGTCTGGCCGGCCTGAACGTGCTGCGCCTGCTCAACGAACCGACT‑GCGGCCGCCGTAGCCTACGGCCTGGACCAGAACGCCGAAGGCGTGGTGGCCATCTATGATCTGGGCGGCGGTACTTTCGATATTTCCAt                      <  4:72385/148‑1 (MQ=255)                                                                                                                         ccAAAGACGCAGCGCGTCTGGCCGGCCTGAACGTGCTGCGCCTGCTCAACGAACCGACT‑GCGGCCGCCGTAGCCTACGGCCTGGACCAGAACGCCGAAGGCGTGGTGGCCATCTATGATCTGGGCGGCGGTACTTTCGATATTTCCATc                     <  5:6695/149‑1 (MQ=255)                                                                                                                         ccAAAGACGCAGCGCGTCTGGCCGGCCTGAACGTGCTGCGCCTGCTCAACGAACCGACT‑GCGGCCGCCGTAGCCTACGGCCTGGACCAGAACGCCGAAGGCGTGGTGGCCATCTATGATCTGGGCGGCGGTACTTTCGATATTTCCATc                     <  7:277130/149‑1 (MQ=255)                                                                                                                          cAAAGACGCAGCGCGTCTGGCCGgcctgacgttgggcgtcatcgaaataggcaggcacggtgatcaccgcgcctaccagctcgccacccaaggtggcttcggcccgttcgcgcaacaccttcaggatgtcggcagacacttccacaggg                     >  8:158283‑M2/1‑23 (MQ=255)                                                                                                                           aaaGACGCAGCGCGTCTGGCCGgcctgacgttgggcgtcatcgaaataggcaggcacggtgatcaccgcgcctaccagctcgccacccaaggtggcttcggcccgttcgcgcaacaccttcaggatgtcggcagacacttccacagggc                    >  1:253449‑M2/1‑22 (MQ=255)                                                                                                                           aaaGACGCAGCGCGTCTGGCCGGCCTGAACGTGCTGCGCCTGCTCAACGAACCGACTCGCGGCCGCCGTAGCCTACGGCCTGGACCAGAACGCCGAAGGCGTGGTGGCCATCTATGATCTGGGCGGCGGTACTTTCGATATTTCCATcc                    >  1:93702/1‑149 (MQ=255)                                                                                                                            aaGACGCAGCGCGTCTGGCCGGCCTGAACGTGCTGCGCCTGCTCAACGAACCGACT‑GCGGCCGCCGTAGCCTACGGCCTGGACCAGAACGCCGAAGGCGTGGTGGCCATCTATGATCTGGGCGGCGGTACTTTCGATATTTCCATCCTg                  >  4:32950/1‑149 (MQ=255)                                                                                                                                 gCAGCGCGTCTGGCCGGACTGAACGTGCTGCGCCTGCTCAACGAACCGACT‑GCGGCCGCCGTAGCCTACGGCCTGGACCAGAACGCCGAAGGCGTGGTGGCCATCTATGATCTGGGCGGCGGTACTTTCGATATTTCCATCCTGCGCCt             <  2:180738/149‑1 (MQ=255)                                                                                                                                  cAGCGCGTCTGGCCGGCCTGAACGTGCTGCGCCTGCTCAACGAACCGACT‑GCGGCCGCCGTAGCCTACGGCCTGGACCAGAACGCCGAAGGCGTGGTGGCCATCTATGATCTGGGCGGCGGTACTTTCGATATTTCCATCCTGCGCCt             >  1:114299/1‑148 (MQ=255)                                                                                                                                     cgcgTCTGGCCGGCCTGAACGTGCTGCGCATGCTCAACGAACCGACT‑GAGGCCGCCGTAGACTACGGCCTGGAACAGAACGCCGAAGGCGTGGAGGCCATCTATGATCTGTGCGTCGGTACATTCTATATTTCCATCCTGACCCAGAcc         >  5:216624/1‑149 (MQ=255)                                                                                                                                       cgTCTGGCCGGCCTGAACGTGCTGCGCCTGCTCAACGAACCGACT‑GCGGCCGCCGTAGCCTACGGCCTGGACCAGAACGCCGAAGGCGTGGTGGCCATCTATGATCTGGGCGGCGGTACTTTCGATATTTCCATCCTGCGCCTGACCGc       <  2:114299/149‑1 (MQ=255)                                                                                                                                            ggccggccTGAACGTGCTGCGCCTGCTCAACGAACCGACT‑GCGGCCGCCGTAGCCTACGGCCTGGACCAGAACGCCGAAGGCGTGGTGGCCATCTATGATCTGGGCGGCGGTACTTTCGATATTTCCATCCTGCGCCTGACCGCTGGCg  >  7:250330/1‑149 (MQ=255)                                                                                                                                                |                                                                                                                                                  AAGTGTCTGCCGACATCCTGAAGGTGTTGCGCGAACGGGCCGAAGCCACCTTGGGTGGCGAGCTGGTAGGCGCGGTGATCACCGTGCCTGCCTATTTCGATGACGCCCAACGTCAGGCTACCAAAGACGCAGCGCGTCTGGCCGGCCTGAACGTGCTGCGCCTGCTCAACGAACCGACT‑GCGGCCGCCGTAGCCTACGGCCTGGACCAGAACGCCGAAGGCGTGGTGGCCATCTATGATCTGGGCGGCGGTACTTTCGATATTTCCATCCTGCGCCTGACCGCTGGCG  >  NC_002947/981506‑981793

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.