New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 2633732	38 (0.730)	3 (0.060)	3/250	NT	7.0%	coding (194/1872 nt)	PP_2304	peptidyl‑prolyl cis‑trans isomerase D
	?	NC_002947	= 2633767	44 (0.900)					coding (229/1872 nt)	PP_2304	peptidyl‑prolyl cis‑trans isomerase D

CGGTTTCGAAGCCATTTTCCAGGCCGCCACTCATAGCCAGGACGCCGCCAAGGTGAACGGCCAGACCATCAGCCAGAACGAACTGAGCCAGGCGGCCGACATGCAGCGCCGTCAACTGATGCAACAGTTGGGCAAGGATTTCGACCCGGCGCTGTTGGATGACAAGTTGCTGCGAGAGGAGGCACTCAAGGGGCTGATCAGCCGCAAGCTGCTGCTGCAAGGTGCTGAGGATGCCAAGTTCGCATTCTCCGAGGCCGCGCTGGATCAGGTGATCCTGCAGACCCCTGAGTTCCA  >  NC_002947/2633622‑2633915                                                                                                                                                  |                                                                                                                                                     cGGTTTCGAAGCCATTTTCCAGGCCGCCACTCATAGCCAGGACGCCGCCAAGGTGAACGGCCAGACCATCAGCCAGAACGAACTGAGCCAGGCGGCCGACATGCAGCGCCGTCAACTGATGCAACAGTTGGGCAAGGATTTCGACCcgg                                                                                                                                                   <  3:207613‑M2/149‑4 (MQ=255)         aaGCCATTTTCCAGGCCGCCACTCATAGCCAGGACGCCGCCAAGGTGAACGGCCAGACCATCAGCCAGAACGAACTGAGCCAGGCGGCCGACATGCAGCGCCGTCAACTGATGCAACAGTTGGGCAAGGATTTCGACCCGGCGCTGTTg                                                                                                                                           >  4:88596/1‑149 (MQ=255)           gCCATTTTCCAGGCCGCCACTCATAGCCAGGACGCCGCCAAGGTGAACGGCCAGACCATCAGCCAGAACGAACTGAGCCAGGCGGCCGACATGCAGCGCCGTCAACTGATGCAACAGTTGGGCAAGGATTTCGACCCGGCGCTGTTGGa                                                                                                                                         <  7:297500/149‑1 (MQ=255)            ccATTTTCCAGGCCGCCACTCATAGCCAGGACGCCGCCAAGGTGAACGGCCAGACCATCAGCCAGAACGAACTGAGCCAGGCGGCCGACATGCAGCGCCGTCAACTGATGCAACAGTTGGGCAAGGATTTCGACCCGGCGCTGTTGGAt                                                                                                                                        <  4:207613/149‑1 (MQ=255)                            cACTCATAGCCAGGACGCCGCCAAGGTGAACGGCCAGACCATCCGCCAGAACGAAATGAGCCAGGCGGCCGACATGCAGCGCACTCAACTGAAGCAACAGTTGGGCAAGGATTTCGACCCGGCGCAGTTGGATGACAAGGtgctgcca                                                                                                                         >  4:232463/1‑146 (MQ=255)                                 aTAGCCAGGACGCCGCCAAGGTGAACGGCCAGACCATCAGCCAGAACGAACTGAGCCAGGCGGCCGACATGCAGCGCCGTCAACTGATGCAACAGTTGGGCAAGGATTTCGACCCGGCGCTGTTGGATGACAAGTTGCTGCGAgagg                                                                                                                     <  8:77631/147‑1 (MQ=255)                                    gCCAGGACGCCGCCAAGGTGAACGGCCAGACCATCAGCCAGAACGAACTGAGCCAGGCGGCCGACATGCAGCGCCGTCAACTGATGCAACAGTTGGGCAAGGATTTCTCCCCGGCGCGGTTGGATGACAAGTTGCTGCGAGAGGAGGCa                                                                                                                >  6:215935/1‑149 (MQ=255)                                      cAGGACGCCGCCAAGGTGAACGGCCAGACCATCAGCCAGAACGAACTGAGCCAGGCGGCCGACATGCAGCGCCGTCAACTGATGCAACAGTTGGGCAAGGATTTCGACCCGGCGCTGTTGGATGACAAGTTGCTGCGAGAGGAGGCACt                                                                                                              >  7:294701/1‑149 (MQ=255)                                                   aGGTGAACGGCCAGACCATCAGCCAGAACGAACTGAGCCAGGCGGCCGACATGCAGCGCCGTCAACTGATGCAACAGTTGGGCAAGGATTTCGACCCGGCGCTGTTGGATGACAAGTTGCTGCGAGAGGAGGCACTCAAGGGGCTGATc                                                                                                 <  8:294701/149‑1 (MQ=255)                                                           ggCCAGACCATCAGCCAGAACGAACTGAGCCAGGCGGCCGACATGCAGCGCCGTCAACTGATGCAACAGTTGGGCAAGGATTTCGACCCGGCGCTGTTGGATGACAAGTTGCTGCGAGAGGAGGCACTCAAGGGGCTGATCAGCCGCaa                                                                                         <  2:8991/149‑1 (MQ=255)                                                             ccAGACCATCAGCCAGAACGAACTGAGCCAGGCGGCCGACATGCAGCGCCGTCAACTGATGCAACAGTTGGGCAAGGATTTCGACCCGGCGCTGTTGGATGACAAGTTGCTGCGAGAGGAGGCACTCAAGGGGCTGATCAGCCGCAAgc                                                                                       >  6:127031/1‑149 (MQ=255)                                                             ccAGACCATCAGCCAGAACGAACTGAGCCAGGCGGCCGACATGCAGCGCCGTCAACTGATGCAACAGTTGGGCAAGGATTTCGACCCGGCGCTGTTGGATGACAAGTTGCTGCGAGAGGAGGCACTCAAGGGGCTGATCAGCCGCAAgc                                                                                       >  4:205860/1‑149 (MQ=255)                                                              cAGACCATCAGCCAGAACGAACTGAGCCAGGCGGCCGACATGCAGCGCCGTCAACTGATGCAACAGTTGGGCAAGGATTTCGACCCGGCGCTGTTGGATGACAAGTTGCTGCGAGAGGAGGCACTCAAGGGGCTGATCAGCCGCAAgct                                                                                      >  3:154569/1‑149 (MQ=255)                                                               aGACCATCAGCCAGAACGAACTGAGCCAGGCGGCCGACATGCAGCGCCGTCAACTGATGCAACAGTTGGGCAAGGATTTCGACCCGGCGCTGTTGGATGACAAGTTGCTGCGAGAGGAGGCACTCAAGGGGCTGATCAGCCGCAAgctg                                                                                     <  4:154569/149‑1 (MQ=255)                                                               aGACCATCAGCCAGAACGAACTGAGACAGGCGGCCGACATGCAGCGCCGTCAACTGATGCAACAGTTGGGCAAGGATTTCGACCCGGCGCTGTTGGATGACAAGTTGCTGCGAGAGGAGGCACTCAAGGGGCTGATCAGCCGCAAgctg                                                                                     >  6:56772/1‑149 (MQ=255)                                                                     tCAGCCAGAACGAACTGAGCCAGGCGGCCGACATGCAGCGCCGTCAACTGATGCAACAGTTGGGCAAGGATTTCGACCCGGCGCTGTTGGATGACAAGTTGCTGCGAGAGGAGGCACTCAAGGGGCTGATCAGCCGCAAGctgctgctg                                                                               >  4:223911/1‑149 (MQ=255)                                                                        gCCAGAACGAACTGAGCCAGGCGGCCGACATGCAGCGCCGTCAACTGATGCAACAGTTGGGCAAGGATTTCGACCCGGCGCTGTTGGATGACAAGTTGCTGCGAGAGGAGGCACTCAAGGGGCTGATCAGCCGCAAGCtgctgctgc                                                                              >  2:325394/1‑147 (MQ=255)                                                                         ccAGAACGAACTGAGCCAGGCGGCCGACATGCAGCGCCGTCAACTGATGCAACAGTTGGGCAAGGATTTCGACCCGGCGCTGTTGGATGACAAGCTGCTGCGAGAGGAGGCACTCAAGGGGCTGATCAGCCGCAAGCTGCTGCTGCAAg                                                                           >  2:90837/1‑149 (MQ=255)                                                                          cAGAACGAACTGAGCCAGGCGGCCGACATGCAGCGCCGTCAACTGATGCAACAGTTGGGCAAGGATTTCGACCCGGCGCTGTTGGATGACAAGTTGCTGCGAGAGGAGGCACTCAAGGGGCTGATCAGCCGCAAGCTGCTGCTGCAAgg                                                                          >  3:123775/1‑149 (MQ=255)                                                                                gaccTGAGCCAGGCTGCCGACATGCAGCGCCTTCAACGGAGGCAACAGTTGGGCAAGGATTTCGACCCGGCGCTGTTGGATGACAAGTTGCTGCGAGAGGAGGCACTCAAGGGGCTGATCAGCCGCAAGCTGCTGCTGCAAGGTGCTGa                                                                    <  8:133748/146‑1 (MQ=255)                                                                                gaacTGAGCCAGGCGGCCGACATGCAGCGCCGTCAACTGATGCAACAGTTGGGCAAGGATTTCGACCCGGCGCTGTTGGATGACAAGTTGCTGCGAGAGGAGGCACTCAAGGGGCTGATCAGCCGCAAGCTGCTGCTGCAAGGTGCTGa                                                                    <  3:205860/149‑1 (MQ=255)                                                                                      aGCCAGGCGGCCGACATGCAGCGCCGTCAACTGATGCAACAGTTGGGCAAGGATTTCGACCCGGCGCTGTTGGATGACAAGTTGCTGCGAGAGGAGGCACTCAAGGGGCTGATCAGCCg                                                                                            <  6:244783/119‑1 (MQ=255)                                                                                       gCCAGGCGGCCGACATGCAGCGCCGTCAACTGATGCAACAGTTGGGCAAGGATTTCGACCCGGCGCTGTTGGATGACAAGTTGCTGCGAGAGGAGGCACTCAAGGGGCTGATCAGCCGCAAGCTGCTGCTGCAAGGTGCTGAGGATGc                                                              >  2:38263/1‑148 (MQ=255)                                                                                            gcggcCGACATGCAGCGCCGTCAACTGATGCAACAGTTGGGCAAGGATTTCGACCCGGCGCTGTTGGATGACAAGTTGCTGCGAGAGGAGGCACTCAAGGGGCTGATCAGCCGCAAGCTGCTGCTGCAAGGTGCTg                                                                     >  2:128045/1‑136 (MQ=255)                                                                                            gcggcCGACATGCAGCGCCGTCAACTGATGCAACAGTTGGGCAAGGATTTCGACCCGGCGCTGTTGGATGACAAGTTGCTGCGAGAGGAGGCACTCAAGGGGCTGATCAGCCGCAAGCTGCTGCTGCAAGGTGCTg                                                                     <  1:128045/136‑1 (MQ=255)                                                                                                    cATGCAGCGCCGTCAACTGATGCAACAGTTGGGCAAGGATTTCGACCcggcgctgcatgtcggccgcctggctcagttcgttctggctgatggtctggccgttcaccttggcggcgtcctggctatgagtgtcggcctggaaaatggct                                                <  7:109186‑M2/149‑103 (MQ=255)                                                                                                       gCAGCGCCGTCAACTGATGCAACAGTTGGGCAAGGATTTCGACCcggcgctgcatgtcggccgcctggctcagttcgttctggctgatggtctggccgttcaccttggcggcgtcctggctatgagtggcggcct                                                           <  3:25609‑M2/135‑92 (MQ=255)                                                                                                       gCAGCGCCGTCAACTGATGCAACAGTTGGGCAAGGATTTCGACCcggcgctgcatgtcggccgcctggctcagttcgttctggctgatggtctggccgttcaccttggcggcgtcctggctatgagtggcggcct                                                           >  4:25609‑M2/1‑44 (MQ=255)                                                                                                        cAGCGCCGTCAACTGATGCAACAGTTGGGCAAGGATTTCGACCCGGCGCTGTTGGATGACAAGTTGCTGCGAGAGGAGGCACTCAAGGGGCTGATCAGCCGCAAGCTGCTGCTGCAAGGTGCTGAGGATGCCAAGTTCGCATTCTCCg                                             <  4:123775/148‑1 (MQ=255)                                                                                                         aGCGCCGTCAACTGATGCAACAGTTGGGCAAGGATTTCGACCCGGCGCTGTTGGATGACAAGTTGCTGCGAGAGGAGGCACTCAAGGGGCTGATCAGCCGCAAGCTGCTGCTGCAAGGTGCTGAGGATGCCAAGTTCGCATTCTCCGAg                                           <  3:88596/149‑1 (MQ=255)                                                                                                          gcgcCGTCAACTGATGCAACAGTTGGGCAAGGATTTCGACCCGGCGCTGTTGGATGACAAGTTGCTGCGAGAGGAGGCACTCAAGGGGCTGATCAGCCGCAAGCTGCTGCTGCAAGGTGCTGAGGATGCCAAGTTCGCATTCTCCGAgg                                          <  1:38263/149‑1 (MQ=255)                                                                                                                tCAACTGATGCAACAGTTGGGCAAGGATTTCGACCCGGCGCTGTTGGATGACAAGTTGCTGCGAGAGGAGGCACTCAAGGGGCTGATCAGCCGCAAGCTGCTGCTGCAAGGTGCTGAGGATGCCAAGTTCGCATTCTCCGAGGCCgcgc                                    >  4:133681/1‑149 (MQ=255)                                                                                                                tCAACTGATGCAACAGTTGGGCAAGGATTTCGACCCGGCGCTGTTGGATGACAAGTTGCTGCGAGAGGAGGCACTCAAGGGGCTGATCAGCCGCAAGCTGCTGCTGCAAGGTGCTGAGGATGCCAAGTTCGCATTCTCCGAGGCCgcgc                                    >  4:117834/1‑149 (MQ=255)                                                                                                                        tGCAACAGTTGGGCAAGGATTTCGACCCGGCGCTGTTGGATGACAAGTTGCTGCGAGAGGAGGCACTCAAGGGGCTGATCAGCCGCAAGCTGCTGCTGCAAGGTGCTGAGGATGCCAAGTTCGCATTCTCCGAGGCCGCGCTGGATCAg                            >  5:122128/1‑149 (MQ=255)                                                                                                                          cAACAGTTGGGCAAGGATTTCGACCCGGCGCTGTTGGATGACAAGTTGCTGCGAGAGGAGGCACTCAAGGGGCTGATCAGCCGCAAGCTGCTGCTGCAAGGTGCTGAGGATGCCAAGTTCGCATTCTCCGAGGCCGCGCTGGATCAgg                           <  5:56772/148‑1 (MQ=255)                                                                                                                          cAACAGTTGGGCAAGGATTTCGACCCGGCGCTGTTGGATGACAAGTTGCTGCGAGAGGAGGCACTCAAGGGGCTGATCAGCCGCAAGCTGCTGCTGCAAGGTGCTGAGGATGCCAAGTTCGCATTCTCCGAGGCCGCGCTGGATCAGGt                          >  6:194955/1‑149 (MQ=255)                                                                                                                          cAACAGTTGGGCAAGGATTTCCACCCGGCGCTGTTGGATGACAAGTTGCTGCGAGAGGAGGCACTCAAGGGGCTGATCAGCCGCAAGCTGCTGCTGCAAGGTGCTGAGGATGCCAAGTTCGCATTCTCCGAGGCCGCGCTGGATCAgg                           <  3:15399/148‑1 (MQ=255)                                                                                                                           aaCAGTTGGGCAAGGATTTCGACCCGGCGCTGTTGGATGACAAGTTGCTGCGAGAGGAGGCACTCAAGGGGCTGATCAGCCGCAAGCTGCTGCTGCAAGGTGCTGAGGATGCCAAGTTCGCATTCTCCGAGGCCGCGCTGGATCAGGt                          >  2:152669/1‑148 (MQ=255)                                                                                                                            aCAGTTGGGCAAGGATTTCGACCCGGCGCTGTTGGATGACAAGTTGCTGCGAGAGGAGGCACTCAAGGGGCTGATCAGCCGCAAGCTGCTGCTGCAAGGTGCTGAGGATGCCAAGTTCGCATTCTCCGAGGCCGCGCTGGATCAGGTGa                        >  1:133125/1‑149 (MQ=255)                                                                                                                              aGTTGGGCAAGGATTTCGACCCGGCGCTGTTGGATGACAAGTTGCTGCGAGAGGAGGCACTCAAGGGGCTGATCAGCCGCAAGCTGCTGCTGCAAGGTGCTGAGGATGCCAAGTTCGCATTCTCCGAGGCCGCGCTGGATCAGGTGATc                      >  7:106859/1‑149 (MQ=255)                                                                                                                                   ggCAAGGATTTCGACCCGGCGCTGTTGGATGACAAGTTGCTGCGAGAGGAGGCACTCAAGGGGCTGATCAGCCGCAAGCTGCTGCTGCAAGGTGCTGAGGATGCCAAGTTCGCATTCTCCGAGGCCGCGCTGGATCAGGTGATCCTGc                  <  3:133681/148‑1 (MQ=255)                                                                                                                                   ggCAAGGATTTCGACCCGGCGCTGTTGGATGACAAGTTGCTGCGAGAGGAGGCACTCAAGGGGCTGATCAGCCGCAAGCTGCTGCTGCAAGGTGCTGAGGATGCCAAGTTCGCATTCTCCGAGGCCGCGCTGGATCAGGTGATCCTGCa                 <  3:307354/149‑1 (MQ=255)                                                                                                                                   ggCAAGGATTTCGACCCGGCGCTGTTGGATGACAAGCTGCTGCGAGAGGAGGCACTCAAGGGGCTGATCAGCCGCAAGCTGCTGCTGCAAGGTGCTGAGGATGCCAAGTTCGCATTCTCCGAGGCCGCGCTGGATCAGGTGATCCTGCa                 <  1:90837/149‑1 (MQ=255)                                                                                                                                     cAAGGATTTCGACCCGGCGCTGTTGGATGACAAGTTGCTGCGAGAGGAGGCACTCAAGGGGCTGATCAGCCGCAAGCTGCTGCTGCAAGGTGCTGAGGATGCCAAGTTCGCATTCTCCGAGGCCGCGCTGGATCAgg                           >  4:166669/1‑137 (MQ=255)                                                                                                                                     cAAGGATTTCGACCCGGCGCTGTTGGATGACAAGTTGCTGCGAGAGGAGGCACTCAAGGGGCTGATCAGCCGCAAGCTGCTGCTGCAAGGTGCTGAGGATGCCAAGTTCGCATTCTCCGAGGCCGCGCTGGATCAgg                           <  3:166669/137‑1 (MQ=255)                                                                                                                                      aaGGATTTCGACCCGGCGCTGTTGGATGACAAGTTGCTGCGAGAGGAGGCACTCAAGGGGCTGATCAGCCGCAAGCTGCTGCTGCAAGGTGCTGAGGATGCCAAGTTCGCATTCTCCGAGGCCGCGCTGGATCAGGTGATCCTGc                  <  7:26884/145‑1 (MQ=255)                                                                                                                                      aaGGATTTCGACCCGGCGCTGTTGGATGACAAGTTGCTGCGAGAGGAGGCACTCAAGGGGCTGATCAGCCGCAAGCTGCTGCTGCAAGGTGCTGAGGATGCCAAGTTCGCATTCTCCGAGGCCGCGCTGGATCAGGTGATCCTGc                  >  8:26884/1‑145 (MQ=255)                                                                                                                                      aaGGATTTCGACCCGGCGCTGTTGGATGACAAGTTGCTGCGAGAGGAGGCACTCAAGGGGCTGATCAGCCGCAAGCTGCTGCTGCAAGGTGCTGAGGATGCCAAGTTCGCATTCTCCGAGGCCGCGCTGGATCAGGTGATCCTGCAGAc              <  6:122128/149‑1 (MQ=255)                                                                                                                                        ggATTTCGACCCGGCGCTGTTGGATGACAAGTTGCTGCGAGAGGAGGCACTCAAGGGGCTGATCAGCCGCAAGCTGCTGCTGCAAGGTGCTGAGGATGCCAAGTTCGCATTCTCCGAGGCCGCGCTGGATCAGGTGATCCTGCAGAccc            >  1:107816/1‑149 (MQ=255)                                                                                                                                             tCGACCCGGCGCTGTTGGATGACAAGTTGCTGCGAGAGGAGGCACTCAAGGGGCTGATCAGCCGCAAGCTGCTGCTGCAAGGTGCTGAGGATGCCAAGTTCGCATTCTCCGAGGCCGCGCTGGATCAGGTGATCCTGCAGACCCCTGa        <  2:107816/148‑1 (MQ=255)                                                                                                                                              cGACCCGGCGCTGTTGGATGACAAGTTGCTGCGAGAGGAGGCACTCAAGGGGCTGATCAGCCGCAAGCTGCTGCTGCAAGGTGCTGAGGATGCCAAGTTCGCATTCTCCGAGGCCGCGCTGGATCAGGTGATCCTGCAGACCCCTGAg       <  5:194955/148‑1 (MQ=255)                                                                                                                                                  ccGGCGCTGTTGGATGACAAGTTGCTGCGAGAGGAGGCACTCAAGGGGCTGATCAGCCGCAAGCTGCTGCTGCAAGGTGCTGAGGATGCCAAGTTCGCATTCTCCGAGGCCGCGCTGGATCAGGTGATCCTGCAGACCCCTGAGTTCCa  <  3:223911/149‑1 (MQ=255)                                                                                                                                                  |                                                                                                                                                     CGGTTTCGAAGCCATTTTCCAGGCCGCCACTCATAGCCAGGACGCCGCCAAGGTGAACGGCCAGACCATCAGCCAGAACGAACTGAGCCAGGCGGCCGACATGCAGCGCCGTCAACTGATGCAACAGTTGGGCAAGGATTTCGACCCGGCGCTGTTGGATGACAAGTTGCTGCGAGAGGAGGCACTCAAGGGGCTGATCAGCCGCAAGCTGCTGCTGCAAGGTGCTGAGGATGCCAAGTTCGCATTCTCCGAGGCCGCGCTGGATCAGGTGATCCTGCAGACCCCTGAGTTCCA  >  NC_002947/2633622‑2633915

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.