New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_002947 = 293688657 (1.090)3 (0.060) 3/250 NT 5.5% coding (920/1677 nt) PP_2569 MHS family metabolite MFS transporter
?NC_002947 = 2936914 49 (1.000)coding (948/1677 nt) PP_2569 MHS family metabolite MFS transporter

GGCAGTTCTACGCGTTGTTCTTCCTGTTGCAGACGCTCAAGATCGAGGCGCAGACCGCCAACCTGCTGATTGCCGGTTCACTGTTGATCGGCACACCATTCTTCATTTTCTTCGGCAGCCTGTCCGACCGGATTGGCCGCAAGAAAATCATCATGGCCGGCTGCATCA‑‑TCGCCGCGCTGACCTACTTCCCGATCTTCAAGGCACTGACCGAGTACGGCAACCCGGATGTATTCGTTGCCCAGGAGCAGAACCCGGTTGTGGTGGTGGCCGACCCGGGCCAATGTG  >  NC_002947/2936775‑2937059
                                                                                                                                           |                                                                                                                                                    
ggCAGTTCTACGCGTTGTTCTTCCTGTTGCAGACGCTCAAGATCGAGGCGCAGACCGCCAACCTGCTGATTGCCGGTTCACTGTTGATCGGCACACCATTCTTCATTTTCTTCGGCAGCCTGTCCGACCGGATTGGCCGCAAGAAAatc                                                                                                                                             <  6:248356/149‑1 (MQ=255)
  cAGTTCTACGCGTTGTTCTTCCTGTTGCAGACGCTCAAGATCGAGGCGCAGACCGCCAACCTGCTGATTGCCGGTTCACTGTTGATCGGCACACCATTCTTCATTTTCTTCGGCAGCCTGTCCGACCGGATTGGCCGCAAGAAAatcat                                                                                                                                           <  3:203698/149‑1 (MQ=255)
        tACGCGTTGTTCTTCCTGTTGCAGACGCTCAAGATCGAGGCGCAGACCGCCAACCTGCTGATTGCCGGTTCACTGTTGATCGGCACACCATTCTTCATTTTCTTCGGCAGCCTGTCCGACCGGATTGGCCGCAAGAAAatc                                                                                                                                             <  7:121283/141‑1 (MQ=255)
        tACGCGTTGTTCTTCCTGTTGCAGACGCTCAAGATCGAGGCGCAGACCGCCAACCTGCTGATTGCCGGTTCACTGTTGATCGGCACACCATTCTTCATTTTCTTCGGCAGCCTGTCCGACCGGATTGGCCGCAAGAAAatc                                                                                                                                             >  8:121283/1‑141 (MQ=255)
             gttggtCTACCTGTTGCAGCCGCTCAAGAGCGAGGCGCAGACCGCCAACCTGCTGATTGCCGGTTCACTGTCGATCGGCACACCATTCTTCATTTTCTTCGGCAGCCTGTCCGACCGGATTGGCCGCAAGAAAATCATCATGGCCGGCt                                                                                                                                <  8:70972/149‑1 (MQ=255)
                 ttcttcCTGTTGCAGACGCTCAAGATCGAGGCGCAGACCGCCAACCTGCTGATTGCCGGTTCACTGTTGATCGGCACACCATTCTTCATTTTCTTCGGCAGCCTGTCCGACCGGATTGGCCGCAAGAAAATCATCATGGCCGGCTGcat                                                                                                                            >  3:33776/1‑149 (MQ=255)
                   cttcCTGTTGCAGACGCTCAAGATCGAGGCGCAGACCGCCAACCTGCTGATTGCCGGTTCACTGTTGATCGGCACACCATTCTTCATTTTCTTCGGCAGCCTGTCCGACCGGATTGGCCGCAAGAAAATCATCATGGCCGGCTGcatca                                                                                                                          >  8:33649/1‑149 (MQ=255)
                         gTTGCAGACGCTCAAGATCGAGGCGCAGACCGCCAACCTGCTGATTGCCGGTTCACTGTTGATCGGCACACCATTCTTCATTTTCTTCGGCAGCCTGTCCGACCGGATTGGCCGCAAGAAAATCATCATGGCCGGCTGCATCA‑‑Tcgccg                                                                                                                 >  3:290651/1‑149 (MQ=255)
                         gTTGCAGACGCTCAAGATCGAGGCGCAGACCGCCAACCTGCTGATTGCCGGTTCACTGTTGATCGGCACACCATTCTTCATTTTCTTCGGCAGCCTGTCCGACCGGATTGGCCGCAAGAAAATCATCATGGCCGGCTGCATCA‑‑Tcgccg                                                                                                                 >  5:95647/1‑149 (MQ=255)
                             cAGACGCTCAAGATCGAGGCGCAGACCGCCAACCTGCTGATTGCCGGTTCACTGTTGATCGGCACACCATTCTTCATTTTCTTCGGCAGCCTGTCCGACCGGATTGGCCGCAAGAAAATCATCATGGCCGGCTGCATCA‑‑TCGCCGCGCt                                                                                                             >  6:178658/1‑149 (MQ=255)
                               gACGCTCAAGATCGAGGCGCAGACCGCCAACCTGCTGATTGCCGGTTCACTGTTGATCGGCACACCATTCTTCATTTTCTTCGGCAGCCTGTCCGACCGGATTGGCCGCAAGAAAATCATCATGGCCGGCTGcatc                                                                                                                           >  3:215189/1‑136 (MQ=255)
                               gACGCTCAAGATAGAGGCGCAGACCGCCAACCTGCTGATTGCCGGTTCACTGTTGATCGGCACACCATTCTTCATTTTCTTCGGCAGCCTGTCCGACCGGATTGGCCGCAAGAAAATCATCATGGCCGGCTGcatc                                                                                                                           <  4:215189/136‑1 (MQ=255)
                                aCGCTCAAGATCGAGGCGCAGACCGCCAACCTGCTGATTGCCGGTTCACTGTTGATCGGCACACCATTCTTCATTTTCTTCGGCAGCCTGTCCGACCGGATTGGCCGCAAGAAAATCATCATGGCCGGCTGCATCA‑‑TCGCCGCGCTGAc                                                                                                          >  4:254212/1‑149 (MQ=255)
                                 cGCTCAAGATCGAGGCGCAGACCGCCAACCTGCTGATTGCCGGTTCACTGTTGATCGGCACACCATTCTTCATTTTCTTCGGCAGCCTGTCCGACCGGATTGGCCGCAAGAAAATCATCATGGCCGGCTGCATCA‑‑TCGCCGCGCTGAcc                                                                                                         <  1:92520/149‑1 (MQ=255)
                                    tCAAGATCGAGGCGCAGACCGCCAACCTGCTGATTGCCGGTTCACTGTTGATCGGCACACCATTCTTCATTTTCTTCGGCAGCCTGTCCGACCGGATTGGCCGCAAGAAAATCATCATGGCCGGCTGCATCA‑‑TCGCCGCGCTGACCTAc                                                                                                      >  6:45920/1‑149 (MQ=255)
                                      aaGATCGAGGCGCAGACCGCCAACCTGCTGATTGCCGGTTCACTGTTGATCGGCACACCATTCTTCATTTTCTTCGGCAGCCTGTCCGACCGGATTGGCCGCAAGAAAATCATCATGGCCGGCTGCATCA‑‑TCGCCGCGCTGACCTa                                                                                                       <  7:194873/146‑1 (MQ=255)
                                      aaGATCGAGGCGCAGACCGCCAACCTGCTGATTGCCGGTTCACTGTTGATCGGCACACCATTCTTCATTTTCTTCGGCAGCCTGTCCGACCGGATTGGCCGCAAGAAAATCATCATGGCCGGCTGCATCA‑‑TCGCCGCGCTGACCTa                                                                                                       >  8:194873/1‑146 (MQ=255)
                                          tCGAGGCCCAGACCGCCAACCTGCTGATTGCCGGGTCACTGTTGATCGGCACACCATTCTTCATTTTCTTCGGCAGCCTGTCCGTCCGGATTGGCCGCAAGAAAATCATCATGGCCGGCTGCATCA‑‑TCGCCGCGCTGACCTACTTCCCg                                                                                                <  5:322178/149‑1 (MQ=255)
                                             aGGCGCAGACCGCCAACCTGCTGATTGCCGGTTCACTGTTGATCGGCACACCATTCTTCATTTTCTTCGGCAGCCTGTCCGACCGGATTGGCCGCAAGAAAATCATCATGGCCGGCTGCATCA‑‑TCGCCGCGCTGACCTACTTCCCGATc                                                                                             >  6:3982/1‑149 (MQ=255)
                                             aGGCGCAGACCGCCAACCTGCTGATTGCCGGTTCACTGTTGATCGGCACACCATTCTTCATTTTCTTCGGCAGCCTGTCCGACCGGATTGGCCGCAAGAAAATCATCATGGCCGGCTGCATCA‑‑TCGCCGCGCTGACCTACTTCCCGATc                                                                                             >  5:330757/1‑149 (MQ=255)
                                                  cAGACCGCCAACCTGCTGATTGCCGGTTCACTGTTGATCGGCACACCATTCTTCATTTTCTTCGGCAGCCTGTCCGACCGGATTGGCCGCAAGAAAATCATCATGGCCGGCTGCATCA‑‑TCGCCGCGCTGACCTACTTCCCGATCTTCaa                                                                                        <  5:3982/149‑1 (MQ=255)
                                                  cAGACCGCCAACCTGCTGATTGCCGGTTCACTGTTGATCGGCACACCATTCTTCATTTTCTTCGGCAGCCTGTCCGACCGGATTGGCCGCAAGAAAATCATCATGGCCGGCTGCATCA‑‑TCGCCGCGCTGACCTACTTCCCGATCTTCaa                                                                                        <  2:295685/149‑1 (MQ=255)
                                                   aGACCGCCAACCTGCTGATTGCCGGTTCACTGTTGATCGGCACACCATTCTTCATTTTCTTCGGCAGCCTGTCCGACCGGATTGGCCGCAAGAAAATCATCATGGCCGGCTGCATCA‑‑TCGCCGCGCTGACCTACTTCCCGATCTTCAAg                                                                                       <  6:330757/149‑1 (MQ=255)
                                                    gACCGCCAACCTGCTGATTGCCGGTTCACTGTTGATCGGCACACCATTCTTCATTTTCTTCGGCAGCCTGTCCGACCGGATTGGCCGCAAGAAAATCATCATGGCCGGCTGCATCA‑‑TCGCCGCGCTGACCTACTTCCCGATCTTCAAgg                                                                                      <  5:178658/149‑1 (MQ=255)
                                                    gACCGCCAACCTGCTGATTGCCGGTTCACTGTTGATCGGCACACCATTCTTCATTTTCTTCGGCAGCCTGTCCGACCGGATTGGCCGCAAGAAAATCATCATGGCCGGCTGCATCA‑‑TCGCCGCGCTGACCTACTTCCCGATCTTCAAgg                                                                                      <  4:290651/149‑1 (MQ=255)
                                                     aCCGCCAACCTGCTGATTGCCGGTTCACTGTTGATCGGCACACCATTCTTCATTTTCTTCGGCAGCCTGTCCGACCGGATTGGCCGCAAGAAAATCATCATGGCCGGCTGCATCA‑‑TCGCCGCGCTGACCTACTTCCCGATCTTCAAgg                                                                                      >  5:131917/1‑148 (MQ=255)
                                                     aCCGCCAACCTGCTGATTGCCGGTTCACTGTTGATCGGCACACCATTCTTCATTTTCTTCGGCAGCCTGTCCGACCGGATTGGCCGCAAGAAAATCATCATGGCCGGCTGCATCA‑‑TCGCCGCGCTGACCTACTTCCCGATCTTCAAGGc                                                                                     <  2:15940/149‑1 (MQ=255)
                                                               tgctgATTGCCGGTTCACTGTTGATCGGCACACCATTCTTCATTTTCTTCGGCAGCCTGTCCGACCGGATTGGCCGCAAGAAAATCATCATGGCCGGCTGCATCA‑‑TCGCCGCGCTGACCTACTTCCCGATCTTCAAGGCACTGACCGAg                                                                           >  2:268629/1‑149 (MQ=255)
                                                                   gATTGCCGGTTCACTGTTGATCGGCACACCATTCTTCATTTTCTTCGGCAGCCTGTCCGACCGGATTGGCCGCAAGAAAATCATCATGGCCGGCTGCATCA‑‑TCGCCGCGCTGACCTACTTCCCGATCTTCAAGGCACTGACCGAGTACg                                                                       >  6:274126/1‑149 (MQ=255)
                                                                    aTTGCCGGTTCACTGTTGATCGGCACACCATTCTTCATTTTCTTCGGCAGCCTGTCCGACCGGATTGGCCGCAAGAAAATCATCATGGCCGGCTGCATCA‑‑TCGCCGCGCTGACCTACTTCCCGATCTTCAAGGCACTGACCGAGTACg                                                                       <  6:131917/148‑1 (MQ=255)
                                                                     ttGCCGGTTCACTGTTGATCGGCACACCATTCTTCATTTTCTTCGGCAGCCTGTCCGACCGGATTGGCCGCAAGAAAATCATCATGGCCGGCTGCATCA‑‑TCGCCGCGCTGACCTACTTCCCGATCTTCAAGGCACTGACCGAGTa                                                                         >  2:77743/1‑145 (MQ=255)
                                                                     ttGCCGGTTCACTGTTGATCGGCACACCATTCTTCATTTTCTTCGGCAGCCTGTCCGACCGGATTGGCCGCAAGAAAATCATCATGGCCGGCTGCATCA‑‑TCGCCGCGCTGACCTACTTCCCGATCTTCAAGGCACTGACCGAGTa                                                                         <  1:77743/145‑1 (MQ=255)
                                                                              cACTGTTGATCGGCACACCATTCTTCATTTTCTTCGGCAGCCTGTCCGACCGGATTGGCCGCAAGAAAATCATCATGGCCGGCTGCATCA‑‑TCGCCGCGCTGACCTACTTCCCGATCTTCAAGGCACTGACCGAGTACGGCAACCCGGa                                                             <  5:45920/148‑1 (MQ=255)
                                                                              cACTGTTGATCGGCACACCATTCTTCATTTTCTTCGGCAGCCTGTCCGACCGGATTGGCCGCAAGAAAATCATCATGGCCGGCTGCATCA‑‑TCGCCGCGCTGACCTACTTCCCGATCTTCAAGGCACTGACCGAGAACGGCAACCCGGa                                                             <  3:254212/148‑1 (MQ=255)
                                                                                 tGTTGATCGGCACACCATTCTTCATTTTCTTCGGCAGCCTGTCCGACCGGATTGGCCGCAAGAAAATCATCATGGCCGGCTGcatc                                                                                                                           >  3:299923/1‑86 (MQ=255)
                                                                                 tGTTGATCGGCACACCATTCTTCATTTTCTTCGGCAGCCTGTCCGACCGGATTGGCCGCAAGAAAATCATCATGGCCGGCTGcatc                                                                                                                           <  4:299923/86‑1 (MQ=255)
                                                                                    tGATCGGCACACCATTCTTCATTTTCTTCGGCAGCCTGTCCGACCGGATTGGCCGCAAGAAAATCATCATGGCCGGCTGCATCA‑‑TCGCCGCGCTGACCTACTTCCCGATCTTCAAGGCACTGACCGAGTACGGCAACCCGGATGTATTc                                                      >  3:264564/1‑149 (MQ=255)
                                                                                     gATCGGCACACCATTCTTCATTTTCTTCGGCAGCCTGTCCGACCGGATTGGCCGCAAGAAAATCATCATGGCCGGCTGCATCA‑‑TCGCCGCGCTGACCTACTTCCCGATCTTCAAGGCACTGACCGAGTACGGCAACCCGGATGTATTc                                                      <  5:274126/148‑1 (MQ=255)
                                                                                     gATCGGCACACCATTCTTCATTTTCTTCGGCAGCCTGTCCGACCGGATTGGCCGCAAGAAAATCATCATGGCCGGCTGCATCA‑‑TCGCCGCGCTGACCTACTTCCCGATCTTCAAGGCACTGACCGAGTACGGCAACCCGGATGTATTc                                                      <  7:33649/148‑1 (MQ=255)
                                                                                       tCGGCACACCATTCTTCATTTTCTTCGGCAGCCTGTCCGACCGGATTGGCCGCAAGAAAATCATCATGGCCGGCTGCATCA‑‑TCGCCGCGCTGACCTACTTCCCGATCTTCAAGGCACTGACCGAGTACGGCAACCCGGATGTATTCGtt                                                   >  4:149548/1‑149 (MQ=255)
                                                                                        cGGCACACCATTCTTCATTTTCTTCGGCAGCCTGTCCGACCGGATTGGCCGCAAGAAAATCATCATGGCCGGCTGCATCA‑‑TCGCCGCGCTGACCTACTTCCCGATCtt                                                                                           >  5:251790/1‑108 (MQ=255)
                                                                                        cGGCACACCATTCTTCATTTTCTTCGGCAGCCTGTCCGACCGGATTGGCCGCAAGAAAATCATCATGGCCGGCTGCATCA‑‑TCGCCGCGCTGACCTACTTCCCGATCtt                                                                                           <  6:251790/108‑1 (MQ=255)
                                                                                              acCATTCTTCATTTTCTTCGGCAGCCTGTCCGACCGGATTGGCCGCAAGAAAATCATCATGGCCGGCTGCATCA‑‑TCGCCGCGCTGACCTACTTCCCGATCTTCAAGGCACTGACCGAGTACGGCAACCCGGATGTATTCGTTGCCCAg                                             >  1:162707/1‑148 (MQ=255)
                                                                                               ccATTCTTCATTTTCTTCGGCAGCCTGTCCGACCGGATTGGCCGCAAGAAAATCATCATGGCCGGCTGCATCA‑‑TCGCCGCGCTGACCTACTTCCCGATCTTCAAGGCACTGACCGAGTACGGCAACCCGGATGTATTCGTTGCCCAGGa                                           <  4:33776/149‑1 (MQ=255)
                                                                                               ccATTCTTCATTTTCTTCGGCAGCCTGTCCGACCGGATTGGCCGCAAGAAAATCATCATGGCCGGCTGCATCA‑‑TCGCCGCGCTGACCTACTTCCCGATCTTCAAGGCACTGACCGAGTACGGCAACCCGGATGTATTCGTTGCCCAGGa                                           <  2:162707/149‑1 (MQ=255)
                                                                                                  ttcttcATTTTCTTCGGCAGCCTGTCCGACCGGATTGGCCGCAAGAAAATCATCATGGCCGGCTGCATCA‑‑TCGCCGCGCTGACCTACTTCCCGATCTTCAAGGCACTGACCGAGTACGGCAACCCGGATGTATTCGTTGCCCAGGAGCa                                        <  4:115872/149‑1 (MQ=255)
                                                                                                    cttcATTTTCTTCGGCAGCCTGTCCGACCGGATTGGCCGCaagaaaatgaagaatggtgtgccgatcaacagtgaaccggcaatcagcaggttggcggtctgcgcctcgatcttgagcgtctgcaacaggaag                                                         >  8:181390‑M2/1‑40 (MQ=255)
                                                                                                    cttcATTTTCTTCGGCAGCCTGTCCGACCGGATTGGCCGCaagaaaatgaagaatggtgtgccgatcaacagtgaaccggcaatcagcaggttggcggtctgcgcctcgatcttgagcgtctgcaacaggaag                                                         <  7:181390‑M2/133‑94 (MQ=255)
                                                                                                     ttcATTTTCTTCGGCAGCCTGTCCGACCGGATTGGCCGCAAGAAAATCATCATGGCCGGCTGCATCA‑‑TCGCCGCGCTGACCTACTTCCCGATCTTCAAGGCACTGACCGAGTACGGCAACCCGGATGTATTCGTTGCCCAGGAGCAGaa                                     >  3:127998/1‑149 (MQ=255)
                                                                                                      tcATTTTCTTCGGCAGCCTGTCCGACCGGATTGGCCGCAAGAAAATCATCATGGCCGGCTGCATCA‑‑TCGCCGCGCTGACCTACTTCCCGATCTTCAAGGCACTGACCGAGTACGGCAACCCGGATGTATTCGTTGCCCAGGAGCAGAAc                                    >  2:31334/1‑149 (MQ=255)
                                                                                                      tcATTTTCTTCGGCAGCCTGTCCGACCGGATTGGCCGCAAGAAAATCATCATGGCCGGCTGCATCA‑‑TAGCCGCGCTGACCTACTTACCGATGTTCAAGGGACTGACCGAGTACGGCAACCCGGATGTATTCGTTGCCCAGGAGCATAAc                                    >  1:81070/1‑149 (MQ=255)
                                                                                                       cATTTTCTTCGGCAGCCTGTCCGACCGGATTGGCCGCaagaaaatgaagaatggtgtgccgatcaacagtgaaccggcaatcagcaggttggcggtctgcgcctcgatcttgagcgtctgcaacaggaagaacaacgcgtagaactgcc                                      <  3:76334‑M2/149‑113 (MQ=255)
                                                                                                                     gCCTGTCCGACCTGATTGGCCGCAAGAAAATCATCATGGCCGGCTGCATCACTTAATCCGCGGACATTTTCTTCCCGATCTTCAAGGCACTGACCGAGTACGGCAACCCGGATGTATTCGTTGCCCAGGAGCAGAACCCGGTTgtgggg                        <  1:268629/149‑3 (MQ=255)
                                                                                                                      ccTGTCCGACCGGATTGGCCGCAAGAAAATCATCATGGCCGGCTGCATCA‑‑TCGCCGCGCTGACCTACTTCCCGATCTTCAAGGCACTGACCGAGTACGGCAACCCGGATGTATTCGTTGCCCAGGAGCAGAACCCGGTTGtggtggtgg                    >  5:218753/1‑149 (MQ=255)
                                                                                                                       cTGTCCGACCGGATTGGCCGCAAGAAAATCATCATGGCCGGCTGCATCA‑‑TCGCCGCGCTGACCTACTTCCCGATCTTCAAGGCACTGACCGAGTACGGCAACCCGGATGTATTCGTTGCCCAGGAGCAGAACCCGGTTGTGGTGGTGGc                   <  4:264564/149‑1 (MQ=255)
                                                                                                                                   aatGGCCGCAAGAAAATCATCATGGCCGGCTGCATCA‑‑TCGCCGAGCTGACCTACATCCCGATCTTCAAGGCACTCACCGAGTACGGCAACACGGATGTATTCGTTCCCCAGGAGAAGAACCCGGTTGTGCAGGTGGCCGACCAGGGcc        >  6:259256/3‑148 (MQ=255)
                                                                                                                                       gCCGCAAGAAAATCATCATGGCCGGCTGCATCA‑‑TCGCCGCGCTGACCTACTTCCCGATCTTCAAGGCACTGACCGAGTACGGCAACCCGGATGTATTCGTTGCCCAGGAGCAGAACCCGGTTGTGGTGGTGGCCGACCCGGGCCAAtgt   <  1:31334/149‑1 (MQ=255)
                                                                                                                                        ccGCAAGAAAATCATCATGGCCGGCTGCATCA‑‑TCGCCGCGCTGACCTACTTCCCGATCTTCAAGGCACTGACCGAGTACGGCAACCCGGATGTATTCGTTGCCCAGGAGCAGAACCCGGTTGTGGTGGTGGCCGACCCGGGCCAAtgtg  <  6:218753/149‑1 (MQ=255)
                                                                                                                                           |                                                                                                                                                    
GGCAGTTCTACGCGTTGTTCTTCCTGTTGCAGACGCTCAAGATCGAGGCGCAGACCGCCAACCTGCTGATTGCCGGTTCACTGTTGATCGGCACACCATTCTTCATTTTCTTCGGCAGCCTGTCCGACCGGATTGGCCGCAAGAAAATCATCATGGCCGGCTGCATCA‑‑TCGCCGCGCTGACCTACTTCCCGATCTTCAAGGCACTGACCGAGTACGGCAACCCGGATGTATTCGTTGCCCAGGAGCAGAACCCGGTTGTGGTGGTGGCCGACCCGGGCCAATGTG  >  NC_002947/2936775‑2937059

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.