New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | = 2936886 | 57 (1.090) | 3 (0.060) | 3/250 | NT | 5.5% | coding (920/1677 nt) | PP_2569 | MHS family metabolite MFS transporter |
? | NC_002947 | = 2936914 | 49 (1.000) | coding (948/1677 nt) | PP_2569 | MHS family metabolite MFS transporter |
GGCAGTTCTACGCGTTGTTCTTCCTGTTGCAGACGCTCAAGATCGAGGCGCAGACCGCCAACCTGCTGATTGCCGGTTCACTGTTGATCGGCACACCATTCTTCATTTTCTTCGGCAGCCTGTCCGACCGGATTGGCCGCAAGAAAATCATCATGGCCGGCTGCATCA‑‑T‑CGCCGCGCTGACCTACTTCCCGATCTTCAAGGCACTGACCGAGTACGGCAACCCGGATGTATTCGTTGCCCAGGAGCAGAACCCGGTTGTGGTGGTGGCCGACCCGGGCCAATGTG > NC_002947/2936775‑2937059 | ggCAGTTCTACGCGTTGTTCTTCCTGTTGCAGACGCTCAAGATCGAGGCGCAGACCGCCAACCTGCTGATTGCCGGTTCACTGTTGATCGGCACACCATTCTTCATTTTCTTCGGCAGCCTGTCCGACCGGATTGGCCGCAAGAAAatc < 6:248356/149‑1 (MQ=255) cAGTTCTACGCGTTGTTCTTCCTGTTGCAGACGCTCAAGATCGAGGCGCAGACCGCCAACCTGCTGATTGCCGGTTCACTGTTGATCGGCACACCATTCTTCATTTTCTTCGGCAGCCTGTCCGACCGGATTGGCCGCAAGAAAatcat < 3:203698/149‑1 (MQ=255) tACGCGTTGTTCTTCCTGTTGCAGACGCTCAAGATCGAGGCGCAGACCGCCAACCTGCTGATTGCCGGTTCACTGTTGATCGGCACACCATTCTTCATTTTCTTCGGCAGCCTGTCCGACCGGATTGGCCGCAAGAAAatc < 7:121283/141‑1 (MQ=255) tACGCGTTGTTCTTCCTGTTGCAGACGCTCAAGATCGAGGCGCAGACCGCCAACCTGCTGATTGCCGGTTCACTGTTGATCGGCACACCATTCTTCATTTTCTTCGGCAGCCTGTCCGACCGGATTGGCCGCAAGAAAatc > 8:121283/1‑141 (MQ=255) gttggtCTACCTGTTGCAGCCGCTCAAGAGCGAGGCGCAGACCGCCAACCTGCTGATTGCCGGTTCACTGTCGATCGGCACACCATTCTTCATTTTCTTCGGCAGCCTGTCCGACCGGATTGGCCGCAAGAAAATCATCATGGCCGGCt < 8:70972/149‑1 (MQ=255) ttcttcCTGTTGCAGACGCTCAAGATCGAGGCGCAGACCGCCAACCTGCTGATTGCCGGTTCACTGTTGATCGGCACACCATTCTTCATTTTCTTCGGCAGCCTGTCCGACCGGATTGGCCGCAAGAAAATCATCATGGCCGGCTGcat > 3:33776/1‑149 (MQ=255) cttcCTGTTGCAGACGCTCAAGATCGAGGCGCAGACCGCCAACCTGCTGATTGCCGGTTCACTGTTGATCGGCACACCATTCTTCATTTTCTTCGGCAGCCTGTCCGACCGGATTGGCCGCAAGAAAATCATCATGGCCGGCTGcatca > 8:33649/1‑149 (MQ=255) gTTGCAGACGCTCAAGATCGAGGCGCAGACCGCCAACCTGCTGATTGCCGGTTCACTGTTGATCGGCACACCATTCTTCATTTTCTTCGGCAGCCTGTCCGACCGGATTGGCCGCAAGAAAATCATCATGGCCGGCTGCATCA‑‑T‑cgccg > 3:290651/1‑149 (MQ=255) gTTGCAGACGCTCAAGATCGAGGCGCAGACCGCCAACCTGCTGATTGCCGGTTCACTGTTGATCGGCACACCATTCTTCATTTTCTTCGGCAGCCTGTCCGACCGGATTGGCCGCAAGAAAATCATCATGGCCGGCTGCATCA‑‑T‑cgccg > 5:95647/1‑149 (MQ=255) cAGACGCTCAAGATCGAGGCGCAGACCGCCAACCTGCTGATTGCCGGTTCACTGTTGATCGGCACACCATTCTTCATTTTCTTCGGCAGCCTGTCCGACCGGATTGGCCGCAAGAAAATCATCATGGCCGGCTGCATCA‑‑T‑CGCCGCGCt > 6:178658/1‑149 (MQ=255) gACGCTCAAGATCGAGGCGCAGACCGCCAACCTGCTGATTGCCGGTTCACTGTTGATCGGCACACCATTCTTCATTTTCTTCGGCAGCCTGTCCGACCGGATTGGCCGCAAGAAAATCATCATGGCCGGCTGcatc > 3:215189/1‑136 (MQ=255) gACGCTCAAGATAGAGGCGCAGACCGCCAACCTGCTGATTGCCGGTTCACTGTTGATCGGCACACCATTCTTCATTTTCTTCGGCAGCCTGTCCGACCGGATTGGCCGCAAGAAAATCATCATGGCCGGCTGcatc < 4:215189/136‑1 (MQ=255) aCGCTCAAGATCGAGGCGCAGACCGCCAACCTGCTGATTGCCGGTTCACTGTTGATCGGCACACCATTCTTCATTTTCTTCGGCAGCCTGTCCGACCGGATTGGCCGCAAGAAAATCATCATGGCCGGCTGCATCA‑‑T‑CGCCGCGCTGAc > 4:254212/1‑149 (MQ=255) cGCTCAAGATCGAGGCGCAGACCGCCAACCTGCTGATTGCCGGTTCACTGTTGATCGGCACACCATTCTTCATTTTCTTCGGCAGCCTGTCCGACCGGATTGGCCGCAAGAAAATCATCATGGCCGGCTGCATCA‑‑T‑CGCCGCGCTGAcc < 1:92520/149‑1 (MQ=255) tCAAGATCGAGGCGCAGACCGCCAACCTGCTGATTGCCGGTTCACTGTTGATCGGCACACCATTCTTCATTTTCTTCGGCAGCCTGTCCGACCGGATTGGCCGCAAGAAAATCATCATGGCCGGCTGCATCA‑‑T‑CGCCGCGCTGACCTAc > 6:45920/1‑149 (MQ=255) aaGATCGAGGCGCAGACCGCCAACCTGCTGATTGCCGGTTCACTGTTGATCGGCACACCATTCTTCATTTTCTTCGGCAGCCTGTCCGACCGGATTGGCCGCAAGAAAATCATCATGGCCGGCTGCATCA‑‑T‑CGCCGCGCTGACCTa < 7:194873/146‑1 (MQ=255) aaGATCGAGGCGCAGACCGCCAACCTGCTGATTGCCGGTTCACTGTTGATCGGCACACCATTCTTCATTTTCTTCGGCAGCCTGTCCGACCGGATTGGCCGCAAGAAAATCATCATGGCCGGCTGCATCA‑‑T‑CGCCGCGCTGACCTa > 8:194873/1‑146 (MQ=255) tCGAGGCCCAGACCGCCAACCTGCTGATTGCCGGGTCACTGTTGATCGGCACACCATTCTTCATTTTCTTCGGCAGCCTGTCCGTCCGGATTGGCCGCAAGAAAATCATCATGGCCGGCTGCATCA‑‑T‑CGCCGCGCTGACCTACTTCCCg < 5:322178/149‑1 (MQ=255) aGGCGCAGACCGCCAACCTGCTGATTGCCGGTTCACTGTTGATCGGCACACCATTCTTCATTTTCTTCGGCAGCCTGTCCGACCGGATTGGCCGCAAGAAAATCATCATGGCCGGCTGCATCA‑‑T‑CGCCGCGCTGACCTACTTCCCGATc > 6:3982/1‑149 (MQ=255) aGGCGCAGACCGCCAACCTGCTGATTGCCGGTTCACTGTTGATCGGCACACCATTCTTCATTTTCTTCGGCAGCCTGTCCGACCGGATTGGCCGCAAGAAAATCATCATGGCCGGCTGCATCA‑‑T‑CGCCGCGCTGACCTACTTCCCGATc > 5:330757/1‑149 (MQ=255) cAGACCGCCAACCTGCTGATTGCCGGTTCACTGTTGATCGGCACACCATTCTTCATTTTCTTCGGCAGCCTGTCCGACCGGATTGGCCGCAAGAAAATCATCATGGCCGGCTGCATCA‑‑T‑CGCCGCGCTGACCTACTTCCCGATCTTCaa < 5:3982/149‑1 (MQ=255) cAGACCGCCAACCTGCTGATTGCCGGTTCACTGTTGATCGGCACACCATTCTTCATTTTCTTCGGCAGCCTGTCCGACCGGATTGGCCGCAAGAAAATCATCATGGCCGGCTGCATCA‑‑T‑CGCCGCGCTGACCTACTTCCCGATCTTCaa < 2:295685/149‑1 (MQ=255) aGACCGCCAACCTGCTGATTGCCGGTTCACTGTTGATCGGCACACCATTCTTCATTTTCTTCGGCAGCCTGTCCGACCGGATTGGCCGCAAGAAAATCATCATGGCCGGCTGCATCA‑‑T‑CGCCGCGCTGACCTACTTCCCGATCTTCAAg < 6:330757/149‑1 (MQ=255) gACCGCCAACCTGCTGATTGCCGGTTCACTGTTGATCGGCACACCATTCTTCATTTTCTTCGGCAGCCTGTCCGACCGGATTGGCCGCAAGAAAATCATCATGGCCGGCTGCATCA‑‑T‑CGCCGCGCTGACCTACTTCCCGATCTTCAAgg < 5:178658/149‑1 (MQ=255) gACCGCCAACCTGCTGATTGCCGGTTCACTGTTGATCGGCACACCATTCTTCATTTTCTTCGGCAGCCTGTCCGACCGGATTGGCCGCAAGAAAATCATCATGGCCGGCTGCATCA‑‑T‑CGCCGCGCTGACCTACTTCCCGATCTTCAAgg < 4:290651/149‑1 (MQ=255) aCCGCCAACCTGCTGATTGCCGGTTCACTGTTGATCGGCACACCATTCTTCATTTTCTTCGGCAGCCTGTCCGACCGGATTGGCCGCAAGAAAATCATCATGGCCGGCTGCATCA‑‑T‑CGCCGCGCTGACCTACTTCCCGATCTTCAAgg > 5:131917/1‑148 (MQ=255) aCCGCCAACCTGCTGATTGCCGGTTCACTGTTGATCGGCACACCATTCTTCATTTTCTTCGGCAGCCTGTCCGACCGGATTGGCCGCAAGAAAATCATCATGGCCGGCTGCATCA‑‑T‑CGCCGCGCTGACCTACTTCCCGATCTTCAAGGc < 2:15940/149‑1 (MQ=255) tgctgATTGCCGGTTCACTGTTGATCGGCACACCATTCTTCATTTTCTTCGGCAGCCTGTCCGACCGGATTGGCCGCAAGAAAATCATCATGGCCGGCTGCATCA‑‑T‑CGCCGCGCTGACCTACTTCCCGATCTTCAAGGCACTGACCGAg > 2:268629/1‑149 (MQ=255) gATTGCCGGTTCACTGTTGATCGGCACACCATTCTTCATTTTCTTCGGCAGCCTGTCCGACCGGATTGGCCGCAAGAAAATCATCATGGCCGGCTGCATCA‑‑T‑CGCCGCGCTGACCTACTTCCCGATCTTCAAGGCACTGACCGAGTACg > 6:274126/1‑149 (MQ=255) aTTGCCGGTTCACTGTTGATCGGCACACCATTCTTCATTTTCTTCGGCAGCCTGTCCGACCGGATTGGCCGCAAGAAAATCATCATGGCCGGCTGCATCA‑‑T‑CGCCGCGCTGACCTACTTCCCGATCTTCAAGGCACTGACCGAGTACg < 6:131917/148‑1 (MQ=255) ttGCCGGTTCACTGTTGATCGGCACACCATTCTTCATTTTCTTCGGCAGCCTGTCCGACCGGATTGGCCGCAAGAAAATCATCATGGCCGGCTGCATCA‑‑T‑CGCCGCGCTGACCTACTTCCCGATCTTCAAGGCACTGACCGAGTa > 2:77743/1‑145 (MQ=255) ttGCCGGTTCACTGTTGATCGGCACACCATTCTTCATTTTCTTCGGCAGCCTGTCCGACCGGATTGGCCGCAAGAAAATCATCATGGCCGGCTGCATCA‑‑T‑CGCCGCGCTGACCTACTTCCCGATCTTCAAGGCACTGACCGAGTa < 1:77743/145‑1 (MQ=255) cACTGTTGATCGGCACACCATTCTTCATTTTCTTCGGCAGCCTGTCCGACCGGATTGGCCGCAAGAAAATCATCATGGCCGGCTGCATCA‑‑T‑CGCCGCGCTGACCTACTTCCCGATCTTCAAGGCACTGACCGAGTACGGCAACCCGGa < 5:45920/148‑1 (MQ=255) cACTGTTGATCGGCACACCATTCTTCATTTTCTTCGGCAGCCTGTCCGACCGGATTGGCCGCAAGAAAATCATCATGGCCGGCTGCATCA‑‑T‑CGCCGCGCTGACCTACTTCCCGATCTTCAAGGCACTGACCGAGAACGGCAACCCGGa < 3:254212/148‑1 (MQ=255) tGTTGATCGGCACACCATTCTTCATTTTCTTCGGCAGCCTGTCCGACCGGATTGGCCGCAAGAAAATCATCATGGCCGGCTGcatc > 3:299923/1‑86 (MQ=255) tGTTGATCGGCACACCATTCTTCATTTTCTTCGGCAGCCTGTCCGACCGGATTGGCCGCAAGAAAATCATCATGGCCGGCTGcatc < 4:299923/86‑1 (MQ=255) tGATCGGCACACCATTCTTCATTTTCTTCGGCAGCCTGTCCGACCGGATTGGCCGCAAGAAAATCATCATGGCCGGCTGCATCA‑‑T‑CGCCGCGCTGACCTACTTCCCGATCTTCAAGGCACTGACCGAGTACGGCAACCCGGATGTATTc > 3:264564/1‑149 (MQ=255) gATCGGCACACCATTCTTCATTTTCTTCGGCAGCCTGTCCGACCGGATTGGCCGCAAGAAAATCATCATGGCCGGCTGCATCA‑‑T‑CGCCGCGCTGACCTACTTCCCGATCTTCAAGGCACTGACCGAGTACGGCAACCCGGATGTATTc < 5:274126/148‑1 (MQ=255) gATCGGCACACCATTCTTCATTTTCTTCGGCAGCCTGTCCGACCGGATTGGCCGCAAGAAAATCATCATGGCCGGCTGCATCA‑‑T‑CGCCGCGCTGACCTACTTCCCGATCTTCAAGGCACTGACCGAGTACGGCAACCCGGATGTATTc < 7:33649/148‑1 (MQ=255) tCGGCACACCATTCTTCATTTTCTTCGGCAGCCTGTCCGACCGGATTGGCCGCAAGAAAATCATCATGGCCGGCTGCATCA‑‑T‑CGCCGCGCTGACCTACTTCCCGATCTTCAAGGCACTGACCGAGTACGGCAACCCGGATGTATTCGtt > 4:149548/1‑149 (MQ=255) cGGCACACCATTCTTCATTTTCTTCGGCAGCCTGTCCGACCGGATTGGCCGCAAGAAAATCATCATGGCCGGCTGCATCA‑‑T‑CGCCGCGCTGACCTACTTCCCGATCtt > 5:251790/1‑108 (MQ=255) cGGCACACCATTCTTCATTTTCTTCGGCAGCCTGTCCGACCGGATTGGCCGCAAGAAAATCATCATGGCCGGCTGCATCA‑‑T‑CGCCGCGCTGACCTACTTCCCGATCtt < 6:251790/108‑1 (MQ=255) acCATTCTTCATTTTCTTCGGCAGCCTGTCCGACCGGATTGGCCGCAAGAAAATCATCATGGCCGGCTGCATCA‑‑T‑CGCCGCGCTGACCTACTTCCCGATCTTCAAGGCACTGACCGAGTACGGCAACCCGGATGTATTCGTTGCCCAg > 1:162707/1‑148 (MQ=255) ccATTCTTCATTTTCTTCGGCAGCCTGTCCGACCGGATTGGCCGCAAGAAAATCATCATGGCCGGCTGCATCA‑‑T‑CGCCGCGCTGACCTACTTCCCGATCTTCAAGGCACTGACCGAGTACGGCAACCCGGATGTATTCGTTGCCCAGGa < 4:33776/149‑1 (MQ=255) ccATTCTTCATTTTCTTCGGCAGCCTGTCCGACCGGATTGGCCGCAAGAAAATCATCATGGCCGGCTGCATCA‑‑T‑CGCCGCGCTGACCTACTTCCCGATCTTCAAGGCACTGACCGAGTACGGCAACCCGGATGTATTCGTTGCCCAGGa < 2:162707/149‑1 (MQ=255) ttcttcATTTTCTTCGGCAGCCTGTCCGACCGGATTGGCCGCAAGAAAATCATCATGGCCGGCTGCATCA‑‑T‑CGCCGCGCTGACCTACTTCCCGATCTTCAAGGCACTGACCGAGTACGGCAACCCGGATGTATTCGTTGCCCAGGAGCa < 4:115872/149‑1 (MQ=255) cttcATTTTCTTCGGCAGCCTGTCCGACCGGATTGGCCGCaagaaaatgaagaatggtgtgccgatcaacagtgaaccggcaatcagcaggttggcggtctgcgcctcgatcttgagcgtctgcaacaggaag > 8:181390‑M2/1‑40 (MQ=255) cttcATTTTCTTCGGCAGCCTGTCCGACCGGATTGGCCGCaagaaaatgaagaatggtgtgccgatcaacagtgaaccggcaatcagcaggttggcggtctgcgcctcgatcttgagcgtctgcaacaggaag < 7:181390‑M2/133‑94 (MQ=255) ttcATTTTCTTCGGCAGCCTGTCCGACCGGATTGGCCGCAAGAAAATCATCATGGCCGGCTGCATCA‑‑T‑CGCCGCGCTGACCTACTTCCCGATCTTCAAGGCACTGACCGAGTACGGCAACCCGGATGTATTCGTTGCCCAGGAGCAGaa > 3:127998/1‑149 (MQ=255) tcATTTTCTTCGGCAGCCTGTCCGACCGGATTGGCCGCAAGAAAATCATCATGGCCGGCTGCATCA‑‑T‑CGCCGCGCTGACCTACTTCCCGATCTTCAAGGCACTGACCGAGTACGGCAACCCGGATGTATTCGTTGCCCAGGAGCAGAAc > 2:31334/1‑149 (MQ=255) tcATTTTCTTCGGCAGCCTGTCCGACCGGATTGGCCGCAAGAAAATCATCATGGCCGGCTGCATCA‑‑T‑AGCCGCGCTGACCTACTTACCGATGTTCAAGGGACTGACCGAGTACGGCAACCCGGATGTATTCGTTGCCCAGGAGCATAAc > 1:81070/1‑149 (MQ=255) cATTTTCTTCGGCAGCCTGTCCGACCGGATTGGCCGCaagaaaatgaagaatggtgtgccgatcaacagtgaaccggcaatcagcaggttggcggtctgcgcctcgatcttgagcgtctgcaacaggaagaacaacgcgtagaactgcc < 3:76334‑M2/149‑113 (MQ=255) gCCTGTCCGACCTGATTGGCCGCAAGAAAATCATCATGGCCGGCTGCATCACTTAATCCGCGGACATTTTCTTCCCGATCTTCAAGGCACTGACCGAGTACGGCAACCCGGATGTATTCGTTGCCCAGGAGCAGAACCCGGTTgtgggg < 1:268629/149‑3 (MQ=255) ccTGTCCGACCGGATTGGCCGCAAGAAAATCATCATGGCCGGCTGCATCA‑‑T‑CGCCGCGCTGACCTACTTCCCGATCTTCAAGGCACTGACCGAGTACGGCAACCCGGATGTATTCGTTGCCCAGGAGCAGAACCCGGTTGtggtggtgg > 5:218753/1‑149 (MQ=255) cTGTCCGACCGGATTGGCCGCAAGAAAATCATCATGGCCGGCTGCATCA‑‑T‑CGCCGCGCTGACCTACTTCCCGATCTTCAAGGCACTGACCGAGTACGGCAACCCGGATGTATTCGTTGCCCAGGAGCAGAACCCGGTTGTGGTGGTGGc < 4:264564/149‑1 (MQ=255) aatGGCCGCAAGAAAATCATCATGGCCGGCTGCATCA‑‑T‑CGCCGAGCTGACCTACATCCCGATCTTCAAGGCACTCACCGAGTACGGCAACACGGATGTATTCGTTCCCCAGGAGAAGAACCCGGTTGTGCAGGTGGCCGACCAGGGcc > 6:259256/3‑148 (MQ=255) gCCGCAAGAAAATCATCATGGCCGGCTGCATCA‑‑T‑CGCCGCGCTGACCTACTTCCCGATCTTCAAGGCACTGACCGAGTACGGCAACCCGGATGTATTCGTTGCCCAGGAGCAGAACCCGGTTGTGGTGGTGGCCGACCCGGGCCAAtgt < 1:31334/149‑1 (MQ=255) ccGCAAGAAAATCATCATGGCCGGCTGCATCA‑‑T‑CGCCGCGCTGACCTACTTCCCGATCTTCAAGGCACTGACCGAGTACGGCAACCCGGATGTATTCGTTGCCCAGGAGCAGAACCCGGTTGTGGTGGTGGCCGACCCGGGCCAAtgtg < 6:218753/149‑1 (MQ=255) | GGCAGTTCTACGCGTTGTTCTTCCTGTTGCAGACGCTCAAGATCGAGGCGCAGACCGCCAACCTGCTGATTGCCGGTTCACTGTTGATCGGCACACCATTCTTCATTTTCTTCGGCAGCCTGTCCGACCGGATTGGCCGCAAGAAAATCATCATGGCCGGCTGCATCA‑‑T‑CGCCGCGCTGACCTACTTCCCGATCTTCAAGGCACTGACCGAGTACGGCAACCCGGATGTATTCGTTGCCCAGGAGCAGAACCCGGTTGTGGTGGTGGCCGACCCGGGCCAATGTG > NC_002947/2936775‑2937059 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |