New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3101333	37 (0.710)	4 (0.080)	4/252	NT	10.7%	coding (634/681 nt)	PP_2710	hypothetical protein
	?	NC_002947	= 3101419	32 (0.650)					coding (53/807 nt)	PP_2711	short‑chain dehydrogenase/reductase family oxidoreductase

GCAGGCCGTCCTCCACGCGGCCAAGGTCGTCTACCGCTTGTACACCGAGATGTTCCAGGGCTTGCCGCGTGCCGGGCAGCAAGAGGTGCACCATGCGTTTGGCTGAGTCCGTGGTGATCCTCACCGGCGCCAGTGGGGGCATAGGCCTGGAATTGGCTGAACAGCTCTGCGCTGCCGGTGCCCAGGTGTTGGCCGTCAGTCGGCATATGGGCAAGCTGGCTGGCCTGATGAACCGGTACCCTGATCGTCTGCGCTGGCAGGAGGCCGACCTGCGCAGCCCGTCAGGGCGC  >  NC_002947/3101275‑3101564                                                                                                                                                 |                                                                                                                                                  gcagGCCGTCCTCCACGCGGCCAAGGTCGTCTACCGCTTGTACACCGAGATGTTCCAGGGCTTGCCGCGTGCCGGGCAGCAAGAGGTGCACCATGCGTTTGGCTGAGTCCGTGGTGATCCTCACCGGCGCCAGTGGGGGCATAGGcctg                                                                                                                                               <  1:45599‑M2/149‑5 (MQ=255)      ccGTCCTCCCCGCGGCCAAGGTCGTCTACCGCTTGTCCACCGCGATGTTCCAGGGCTTGCCGCGTGCCGGGCAGCAAGAGGTGCACCATGCTTTTGGCTGAGTCCGTGGTGATCCTCACCGGCGCCAGTGGGGGCATAGGCCTGGAAtt                                                                                                                                          <  5:165109/149‑1 (MQ=255)      ccGTCCTCCACGCGGCCAAGGTCGTCTACCGCTTGTACACCGAGATGTTCCAGGGCTTGCCGCGTGCCGGGCAGCAAGAGGTGCACCATGCGTTTGGCTGAGTCCGTGGTGATCCTCACCGGCGCCAGTGGGGGCATAGGCCTGGAAtt                                                                                                                                          <  5:133119/149‑1 (MQ=255)       cGTCCTCCACGCGGCCAAGGTCGTCTACCGCTTGTACACCGAGATGTTCCAGGGCTTGCCGCGTGCCGGGCAGCAAGAGGTGCACCATGCGTTTGGCTGAGTCCGTGGTGATCCTCACCGGCGCCAGTGGGGGCATAGGCCTGGAATTg                                                                                                                                         <  7:126396/149‑1 (MQ=255)          cctccACGCGGCCAAGGTCGTCTACCGCTTGTACACCGAGATGTTCCAGGGCTTGCCGCGTGCCGGGCAGCAAGAGGTGCACCATGCGTTTGGCTGAGTCCGTGGGGATCCTCACCGGCGCCAGTGGGGGCATAGGCCTGGAATTgg                                                                                                                                        <  6:253270/147‑1 (MQ=255)                       aaGGTCGTCTACCGCTTGTACACCGAGATGTTCCAGGGCTTGCCGCGTGCCGGGCAGCAAGAGGTGCACCATGCGTTTGGCTGAGTCCGTGGTGATCCTCACCGGCGCCAGTGGGGGCATAGGCCTGGAATTGGCTGAACAGCTCTgcg                                                                                                                         >  1:153862/1‑149 (MQ=255)                              tcTACCGCTTGTACACCGAGATGTTCCAGGGCTTGCCGCGTGCCGGGCAGCAAGAGGTGCACCATGCGTTTGGCTGAGTCCGTGGTGATCCTCACCGGCGCCAGTGGGGGCATAGGCCTGGAATTGGCTGAACAGCTCTGCGCTGCCgg                                                                                                                  >  7:69569/1‑149 (MQ=255)                                tACCGCTTGTACACCGAGATGTTCCAGGGCTTGCCGCGTGCCGGGCAGCAAGAGGTGCACCATGCGTTTGGCTGAGTCCGTGGTGATCCTCACCGGCGCCAGTGGGGGCATAGGCCTGGAATTGGCTGAACCGCTCTGCGCTGCCGGTg                                                                                                                >  8:40707/1‑149 (MQ=255)                                  ccGCTTGTACACCGAGATGTTCCAGGGCTTGCCGCGTGCCGGGCAGCAAGAGGTGCACCATGCGTTTGGCTGAGTCCGTGGTGATCCTCACCGGCGCCAGTGGGGGCATAGGCCTGGAATTGGCTGAACAGCTCTGCGCTGCCGGTGcc                                                                                                              >  6:170421/1‑149 (MQ=255)                                  ccGCTTGTACACCGAGATGTTCCAGGGCTTGCCGCGTGCCGGGCAGCAAGAGGTGCACCATGCGTTTGGCTGAGTCCGTGGTGATCCTCACCGGCGCCAGTGGGGGCATAGGCCTGGAATTGGCTGAACAGCTCTGCGCTGCCGGTGcc                                                                                                              >  4:119196/1‑149 (MQ=255)                                         tACACCGAGATGTTCCAGGGCTTGCCGCGTGCCGGGCAGCAAGAGGTGCACCATGCGTTTGGCTGAGTCCGTGGTGATCCTCACCGGCGCCAGTGGGGGCATAGGCCTGGAATTGGCTGAACAGCTCTGCGCTGCCGGTGCCCAGgtgt                                                                                                       <  2:45599/149‑1 (MQ=255)                                             ccGAGATGTTCCAGGGCTTGCCGCGTGCCGGGCAGCAAGAGGTGCACCATGCGTTTGGCTGAGTCCGTGGTGCTCCTCACCGGCGCCAGTGGGGGCATAGGCCTGGATGTGGCTGAACAGCTCTGCGCTGCCGGTGCCCAGGTGTTGGc                                                                                                   >  6:323092/1‑149 (MQ=255)                                              cGAGATGTTCCAGGGCTTGCCGCGTGCCGGGCAGCAAGAGGTGCACCATGCGTTTGGCTGAGTCCGTGGTGATCCTCACCGGCGCCAGTGGGGGCATAGGCCTGGAATTGGCTGAAc                                                                                                                                  >  3:171609/1‑117 (MQ=255)                                              cGAGATGTTCCAGGGCTTGCCGCGTGCCGGGCAGCAAGAGGTGCACCATGCGTTTGGCTGAGTCCGTGGTGATCCTCACCGGCGCCAGTGGGGGCATAGGCCTGGAATTGGCTGAAc                                                                                                                                  <  4:171609/117‑1 (MQ=255)                                              cGAGATGTTCCAGGGCTTGCCGCGTGCCGGGCAGCAAGAGGTGCACCATGCGTTTGGCTGAGTCCGTGGTGATCCTCACCGGCGCCAGTGGGGGCATAGGCCTGGAATTGGCTGAACAGCTCTGCGCTGCCGGTGCCCAGGTGTTGGcc                                                                                                  >  6:15724/1‑149 (MQ=255)                                                agaTGTTCCAGGGCTTGCCGCGTGCCGGGCAGCAAGAGGTGCACCATGCGTTTGGCTGAGTCCGTGGTGATCCTCACCGGCGCCAGTGGGGGCATAGGCCTGGAATTGGCTGAACAGCTCTGCGCTGCCGGTGCCCAGGTGTTGGCCGt                                                                                                <  8:10717/149‑1 (MQ=255)                                                 gaTGTTCCAGGGCTTGCCGCGTGCCGGGCAGCAAGAGGTGCACCATGCGTTTGGCTGAGTCCGTGGTGATCCTCACCGGCGCCAGTGGGGGCATAGGcctggaacatctcggtgtacaagcggtagacgac                                                                                                                 >  2:309590‑M2/1‑97 (MQ=255)                                                 gaTGTTCCAGGGCTTGCCGCGTGCCGGGCAGCAAGAGGTGCACCATGCGTTTGGCTGAGTCCGTGGTGATCCTCACCGGCGCCAGTGGGGGCATAGGcctggaacatctcggtgtacaagcggtagacgac                                                                                                                 <  1:309590‑M2/131‑35 (MQ=255)                                                     ttCCAGGGCTTGCCGCGTGCCGGGCAGCAAGAGGTGCACCATGCGTTTGGCTGAGTCCGTGGTGATCCTCACCGGCGCCAGTGGGGGCATAGGCCTGGAATTGGCTGAACAGCTCTGCGCTGCCGGTGCCCAGGTGTTGGCCGTCAGTc                                                                                           >  2:133472/1‑149 (MQ=255)                                                     ttCCAGGGCTTGCCGCGTGCCGGGCAGCAAGAGGTGCACCATGCGTTTGGCTGAGTCCGTGGTGATCCTCACCGGCGCCAGTGGGGGCATAGGCCTGGAATTGGCTGAACAGCTCTGCGCTGCCGGTGCCCAGGTGTTGGCCGTCAGTc                                                                                           <  5:170421/149‑1 (MQ=255)                                                      tCCAGGGCTTGCCGCGTGCCGGGCAGCAAGAGGTGCACCATGCGTTTGGCTGAGTCCGTGGTGATCCTCACCGGCGCCAGTGGGGGCATAGGcctggaacatctcggtgtacaagcggtagacgaccttggccgcgtggaggacggcct                                                                                          <  8:190642‑M2/149‑58 (MQ=255)                                                      tCCAGGGCTTGCCGCGTGCCGGGCAGCAAGAGGTGCACCATGCGTTTGGCTGAGTCCGTGGTGATCCTCACCGGCGCCAGTGGGGGCATAGGCCTGGAATTGGCTGAACAGCTCTGCGCTGCCGGTGCCCAGGTGTTGGCCGTCAGTc                                                                                           <  3:119196/148‑1 (MQ=255)                                                                 ccGCGTGCCGGGCAGCAAGAGGTGCACCATGCGTTTGGCTGAGTCCGTGGTGATCCTCACCGGCGCCAGTGGGGGCATAGGCCTGGAATTGGCTGAACAGCTCTGCGCTGCCGGTGCCCAGGTGTTGGCCGTCAGTCGGCATATGGGc                                                                                <  1:133472/148‑1 (MQ=255)                                                                          gggCAGCAAGAGGTGCACCATGCGTTTGGCTGAGTCCGTGGTGATCCTCACCGGCGCCAGTGGGGGCATAGGCCTGGAATTGGCTGAACAGCTCTGCGCTGCCGGTGCCCAGGTGTTGGCCGTCAGTCGGCATATGGGCAAgctggctg                                                                      <  8:69569/149‑1 (MQ=255)                                                                          gggCAGCAAGAGGTGCACCATGCGGTTGGCTGAGTCCGTGGTGATCCTCACCGGCGCCAGTGGGGGCATAGGcctggaacatctcggtgtacaagcggtagacgaccttggccgcgtggaggacggcctgctggtcaccggcatcgtcg                                                                      >  7:190642‑M2/1‑72 (MQ=255)                                                                            gcagcaAGAGGTTCACCATGCGTTTGGCTGAGTCCGTGGTGATCCTCACCGGCGCCAGTGGGGGCATAGGCCTGGAATTGGCTGAACAGCTCTGCGCTGCCGGTGCCCAGGTGTTGGCCGTCAGTCGGCATATGGGCAAGCtggctggc                                                                    <  7:155595/149‑1 (MQ=255)                                                                                caAGAGGTGCACCATGCGTTTGGCTGAGTCCGTGGTGATCCTCACCGGCGCCAGTGGGGGCATAGGCCTGGAATTGGCTGAACAGCTCTGCGCTGCCGGTGCCCAGGTGTTGGCCGTCAGTCGGCATATGGGCAAGCTGGCTGGCCtga                                                                >  1:176522/1‑149 (MQ=255)                                                                                      gTGCACCATGCGTTTGGCTGAGTCCGTGGTGATCCTCACCGGCGCCAGTGGGGGCATAGGCCTGGAATTGGCTGAACAGCTCTGCGCTGCCGGTGCCCAGGTGTTg                                                                                                     <  2:287250/106‑1 (MQ=255)                                                                                      gTGCACCATGCGTTTGGCTGAGTCCGTGGTGATCCTCACCGGCGCCAGTGGGGGCATAGGCCTGGAATTGGCTGAACAGCTCTGCGCTGCCGGTGCCCAGGTGTTg                                                                                                     >  1:287250/1‑106 (MQ=255)                                                                                       tGCACCATGCGTTTGGCTGAGTCCGTGGTGATCCTCACCGGCGCCAGTGGGGGCATAGGCCTGGAATTGGCTGAACAGCTCTGCGCTGCCGGTGCCCAGGTGTTGGCCGTCAGTCGGCATATGGGCAAGCTGGCTGGCCTGATGAACCg                                                         <  2:153862/149‑1 (MQ=255)                                                                                         cACCATGCGTTTGGCTGAGTCCGTGGTGATCCTCACCGGCGCCAGTGGGGGCATAGGCCTGGAATTGGCTGAACAGCTCTGCGCTGCCGGTGCCCAGGTGTTGGCCGTCAGTCGGCATATGGGCAAGCTGGCTGGACTGATGAACCgg                                                        >  1:322610/1‑148 (MQ=255)                                                                                             aTGCGTTTGGCTGAGTCCGTGGTGATCCTCACCGGCGCCAGTGGGGGCATAGGCCTGGAATTGGCTGAACAGCTCTGCGCTGCCGGTGCCCAGGTGTTGGCCGTCAGTCGGCATATGGGCAAGCTGGCTGGCCTGATGAACCGGTAccc                                                   >  6:26624/1‑149 (MQ=255)                                                                                                  tttGGCTGAGTCCGTGGTGATCCTCACCGGCGCCAGTGGGGGCATAGGCCTGGAATTGGCTGAACAGCTCTGCGCTGCCGGTGCCCAGGTGTTGGCCGTCAGTCGGCATATGGGCAAGCTGGCTGGCCTGATGAACCGGTACCCTGATc                                              <  5:66124/149‑1 (MQ=255)                                                                                                     ggCTGAGTCCGTGGTGATCCTCACCGGCGCCAGTGGGGGCATAGGCCTGGAATTGGCTGAACAGCTCTGCGCTGCCGGTGCCCAGGTGTTGGCCGTCAGTAGGCATATGGGCAAGCTGGCTGGCCTGATGAACCGGTACCCTGATCGTc                                           >  5:195393/1‑149 (MQ=255)                                                                                                      gCTGAGTCCGTGGTGATCCTCACCGGCGCCAGTGGGGGCATAGGCCTGGAATTGGCTGAACAg                                                                                                                                >  4:90305/1‑63 (MQ=255)                                                                                                      gCTGAGTCCGTGGTGATCCTCACCGGCGCCAGTGGGGGCATAGGCCTGGAATTGGCTGAACAg                                                                                                                                <  3:90305/63‑1 (MQ=255)                                                                                                                    gATCCTCACCGGCGCCAGTGGGGGCATAGGCCTGGAATTGGCTGAACAGCTCTGCGCTGCCGGTGCCCAGGTGTTGGCCGTCAGTCGGCATATGAGCAAGCTGGCTGGCCTGATGAACCGGTACCCTGATCGTCTGCGCTGGCaggagg                            >  7:290346/1‑149 (MQ=255)                                                                                                                           aCCGGCGCCAGTGGGGGCATAGGCCTGGAATTGGCTGAACAGCTCTGCGCTGCCGGTGCCCAGGTGTTGGCCGTCAGTCGGCATATGGGCAAGCTGGCTGGCCTGATGAACCGGTACCCTGATCGTCTGCGCTGGCAGGAGGCCGAc                       <  5:15724/147‑1 (MQ=255)                                                                                                                           aCCGGCGCCAGGGGGGGCATAGGCCTGGAATTGGCTGACCAGCTCTGCGCTGCCGGTTCCCAGGTGTTGGCCGTCAGTCGGCATATGGGCAAGCTGGCTGGCCTGATGAACCGGTACCCTGATCGTCTGCGCTGGCAGGAGGCCGACCt                     <  5:323092/149‑1 (MQ=255)                                                                                                                                          ggCATAGGCCTGGAATTGGCTGAACAGCTCTGCGCTGCCGGTGCCCAGGTGTTGGCCGTCAGTCGGCATATGGGCAAGCTGGCTGGCCTGATGAACCGGTACCCTGATCGTCTGCGCTGGCAGGAGGCCGACCTGCGCAGCCCGTCAgg      >  5:41080/1‑149 (MQ=255)                                                                                                                                            cATAGGCCTGGAATTGGCTGAACAGCTCTGCGCTGCCGGTGCCCAGGTGTTGGCCGTCAGTCGGCATATGGGCAAGCTGGCTGGCCTGATGAACCGGTACCCTGATCGTCTGCGCTGGCAGGAGGCCGACCTGCGCAGCCCGTCAGGgc    >  5:165520/1‑149 (MQ=255)                                                                                                                                              tAGGCCTGGAATTGGCTGAACAGCTCTGCGCTGCCGGTGCCCAGGTGTTGGCCGTCAGTCGGCATATGGGCAAGCTGGCTGGCCTGATGAACCGGTACCCTGATCGTCTGCGCTGGCAGGAGGCCGACCTGCGCAGCCCGTCAGGgcgc  <  6:165520/149‑1 (MQ=255)                                                                                                                                              tAGGCCTGGAATTGGCTGAACAGCTCTGCGCTGCCGGTGCCCAGGTGTTGGCCGTCAGTCGGCATATGGGCAAGCTGGCTGGCCTGATGAACCGGTACCCTGATCGTCTGCGCTGGCAGGAGGCCGACCTGCGCAGCCCGTCAGGgcgc  <  2:176522/149‑1 (MQ=255)                                                                                                                                              tAGGCCTGGAATTGGCTGAACAGCTCTGCGCTGCCGGTGCCCAGGTGTTGGCCGTCAGTCGGCATATGAGCAAGCTGGCTGGCCTGATGAACCGGTACCCTGATCGTCTGCGCTGGCAGGAGGCCGACCTGCGCAGCCCGTCAGGgcgc  <  8:290346/149‑1 (MQ=255)                                                                                                                                                 |                                                                                                                                                  GCAGGCCGTCCTCCACGCGGCCAAGGTCGTCTACCGCTTGTACACCGAGATGTTCCAGGGCTTGCCGCGTGCCGGGCAGCAAGAGGTGCACCATGCGTTTGGCTGAGTCCGTGGTGATCCTCACCGGCGCCAGTGGGGGCATAGGCCTGGAATTGGCTGAACAGCTCTGCGCTGCCGGTGCCCAGGTGTTGGCCGTCAGTCGGCATATGGGCAAGCTGGCTGGCCTGATGAACCGGTACCCTGATCGTCTGCGCTGGCAGGAGGCCGACCTGCGCAGCCCGTCAGGGCGC  >  NC_002947/3101275‑3101564

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.