New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3641820	48 (0.920)	3 (0.060)	3/254	NT	6.1%	coding (1385/1431 nt)	PP_3209	isoxanthopterin deaminase
	?	NC_002947	= 3641851	47 (0.950)					coding (1354/1431 nt)	PP_3209	isoxanthopterin deaminase

CCACACCCAGCACGTCGTCGGCTTCAAGGCGCAGGGCCCGCACCTGCAGAGGCGTCCAGCTCATGCGCGTACCCCCGCGGCCTGTTGCAGGCGAAGTACAGCCTGGCGTGCCTGGCTGCCCAGTTCGGCGAGGTCCAAGCCAGGAATCGCATCGTTTTCCACGCTCAGGCGGCCGCCTACCAGCAATGCCCGCAGCGTCGGACGGCCACCGCCAACCACTGGGGCGATGCCCAGATCATGCAGACCGAAGTAGCGGGGTTGATCAAGGCGATAGATCGCCAGG  >  NC_002947/3641714‑3641996                                                                                                                                          |                                                                                                                                                  ccACACCCAGCACGTCGTCGGCTTCAAGGCGCAGGGCCCGCACCTGCAGAGGCGTCCAGCTCATGCGCGTACCCCCGCGGCCTGTTGCAGGCGAAGTACAGCCTGGCGTGCCTGGCTGCCCAGTTCGGCGAGGTCCAAGCCAGGAATc                                                                                                                                         <  2:18431/148‑1 (MQ=255)       ccAGCACGTCGTCGGCTTCAAGGCGCAGGGCCCGCACCTGCAGAGGCGTCCAGCTCATGCGCGTACCCCCGCGGCCTGTTGCAGGCGAAGTACAGCCTGGCGTGCCTGGCTGCCCAGTTCGGCGAGGTCCAAGCCAGGAATCGCATCGt                                                                                                                                  >  5:262196/1‑149 (MQ=255)       ccAGCACGTCGTCGGCTTCAAGGCGCAGGGCCCGCACCTGCAGAGGCGTCCAGCTCATGCGCGTACCCCCGCGGCCTGTTGCAGGCGAAGTACAGCCTGGCGTGCCTGGCTGCCCAGTTCGGCGAGGTCCAAGCCAGGAATCGCATCGt                                                                                                                                  >  5:117473/1‑149 (MQ=255)        cAGCACGTCGTCGGCTTCAAGGCGCAGGGCCCGCACCTGCAGAGGCGTCCAGCTCATGCGCGTACCCCCGCGGCCTGTTGCAGGCGAAGTACAGCCTGGCGTGCCTGGCTGCCCAGTTCGCCGAGGTCCAAGCCCGGAAACGCATCGtt                                                                                                                                 >  3:44897/1‑149 (MQ=255)           cACGTCGTCGGCTTCAAGGCGCAGGGCCCGCACCTGCAGAGGCGTCCAGCTCATTGGCGTACCCTTGCGGCCTGTTGCAGGCGAAGTACAGCCTGGCGTGCCTGGCTGCCCAGTTCGGCGAGGTCCAAGCCAGGAATCGCATCGTTTTc                                                                                                                              <  1:269252/149‑1 (MQ=255)            aCGTCGTCGGCTTCAAGGCGCAGGGCCCGCACCTGCAGAGGCGTCCAGCTCATGCGCGTACCCCCGCGGCCTGTTGCAGGCGAAGTACAGCCTGGCGTGCCTGGCTGCCCAGTTCGGCGAGGTCCAAGCCAGGAATCGCATCGTTTTcc                                                                                                                             <  2:191265/149‑1 (MQ=255)                  tcgGCTTCAAGGCGCAGGGCCCGCACCTGCAGAGGCGTCCAGCTCATGCGCGTACCCCCGCGGCCTGTTGCAGGCGAAGTACAGCCTGGCGTGCCTGGCTGCCCAGTTCGGCGAGGTCCAAGCCAGGAATCGCATCGTTTTCCACGCt                                                                                                                        >  4:233573/1‑148 (MQ=255)                     gCTTCAAGGCGCAGGGCCCGCACCTGCAGAGGCGTCCAGCTCATGCGCGTACCCCCGCGGCCTGTTGCAGGCGAAGTACAGCCTGGCGTGCCTGGCTGCCCAGTTCGGCGAGGTCCAAGCCAGGAATCGCATCGTTTTCCACGCTCAgg                                                                                                                    <  1:146334/149‑1 (MQ=255)                        tgcaGGTGCGGGCCCTGCGCCTGCAGAGGCGTCCAGCTCATGCGCGTACCCCCGCGGCCTGTTGCAGGCGAAGTACAGCCTGGCGTGCCTGGCTGCCCAGTTCGGCGAGGTCCAAGCCAGGAATCGCATCGTTTTCCACGCTCAggcgg                                                                                                                 >  3:284774/4‑149 (MQ=255)                          aaGGCGCAGGGCCCGCACCTGCAGAGGCGTCCAGCTCATGCGCGTACCCCCGCGGCCTGTTGCAGGCGAAGTACAGCCTGGCGTGCCTGGCTGCCCAGTTCGGCGAGGTCCAAGCCAGGAATCGCATCGttt                                                                                                                                >  4:151842/1‑132 (MQ=255)                          aaGGCGCAGGGCCCGCACCTGCAGAGGCGTCCAGCTCATGCGCGTACCCCCGCGGCCTGTTGCAGGCGAAGTACAGCCTGGCGTGCCTGGCTGCCCAGTTCGGCGAGGTCCAAGCCAGGAATCGCATCGttt                                                                                                                                <  3:151842/132‑1 (MQ=255)                          aaGGCGCAGGGCCCGCACCTGCAGAGGCGTCCAGCTCATGCGCGTACCCCCGCGGCCTGTTGCAGGCGAAGTACAGCCTGGCGTGCCTGGCTGCCCAGTTCGGCGAGGTCCAAGCCAGGAATCGCATCGTTTTCCACGCTCAGGCGgcc                                                                                                               <  6:77389/149‑1 (MQ=255)                           aGGTGCGGGCCCTGCGCCTGCAGAGGCGTCCAGCTCATGCGCGTACCCCCGCGGCCTGTTGCAGGCGAAGTACAGCCTGGCGTGCCTGGCTGCCCAGTTCGGCGAGGTCCAAGCCAGGAATCGCATCGTTTTCCACGCTCAGGCGgccg                                                                                                              <  4:284774/149‑1 (MQ=255)                           aGGCGCAGGGCCCGCACCTGCAGAGGCGTCCAGCTCATGCGCGTACCCACGCGGCCTGTTGAAGGCGAAGTACAGCCTGGCGTGCCTGGCTGCCCAGTTCGGCGAGGTCCAAGCCAGGAATCGCATCGTTTTCCACGCTCAGGAGgccg                                                                                                              >  7:3209/1‑149 (MQ=255)                                  gggCCCGCACCTGCAGAGGCGTCCAGCTCATGCGCGTACCCCCGCGGCCTGTTGCAGGCGAAGTACAGCCTGGCGTGCCTGGCTGCCCAGTTCGGCGAGGTCCAAGCCAGGAATCGCATCGTTTTCCACGCTCAGGCGGCCGCCTACCa                                                                                                       <  1:38856/149‑1 (MQ=255)                                              gCAGAGGCGTCCAGCTCATGCGCGTACCCCCGCGGCCTGTTGCAGGCGAAGTACAGCCTGGCGTGCCTGGCTGCCCAGTTCGGCGAGGTCCAAGCCAGGAATCGCATCGTTTTCCACGCTCAGGCGGCCGCCTACCAGCAATGCCCGCa                                                                                           >  6:87479/1‑149 (MQ=255)                                                         cAGCTCATGCGCGTACCCCCGCGGCCTGTTGCAGGCGAAGTACAGCCTGGCGTGCCTGGCTGCCCAGTTCGGCGAGGTCCAAGCCAGGAATCGCATCGTTTTCCACGCTCAGGCGGCCGCCTACCAGCAATGCCCGCAGCGTCGGACgg                                                                                >  8:13321/1‑149 (MQ=255)                                                         cAGCTCATGCGCGTACCCCCGCGGCCTGTTGCAGGCGAAGTACAGCCTGGCGTGCCTGGCTGCCCAGTTCGGCGAGGTCCAAGCCAGGAATCGCATCGTTTTCCACGCTCAGGCGGCCGCCTACCAGCAATGCCCGCAGCGTCGGACgg                                                                                <  8:118758/149‑1 (MQ=255)                                                         cAGCTCATGCGCGTACCCCCGCGGCCTGTTGCAGGCGAAGTACAGCCTGGCGTGCCTGGCTGCCCAGTTCGGCGAGGTCCAAGCCAGGAATCGCATCGTTTTCCACGCTCAGGCGGCCGCCTACCAGCAATGCCCGCAGCGTCGGACgg                                                                                >  8:280750/1‑149 (MQ=255)                                                               aTGCGCGTACCCCCGCGGCCTGTTGCAGGCGAAGTACAGGCTGGCGTGCCTGGCTGCCCAGTTCGGCGAGGTCCAAGCCAGGAATCGCATCGTTTTCCACGCTCAGGCGGCCGCCTACCAGCAATGCCCGCAGCGTCTGACGGCCa                                                                             <  6:262196/146‑1 (MQ=255)                                                                           ccGCGGCCTGTTGCAGGCGAAGTACAGCCTGGCGTGCCTGGCTGCCCAGTTCGGCGAGGTCCAAGCCAGGAATCGCATCGTTTTCCACGCTCAGGCGGCCGCCTACCAGCAATGCCCGCAGCGTCGGACGGCCACCGCCAACCACTggg                                                              <  1:58033/149‑1 (MQ=255)                                                                           ccGCGGCCTGTTGCAGGCGAAGTACAGCCTGGCGTGCCTGGCTGCCCAGTTCGGCGAGGTCCAAGCCAGGAATCGCATCGTTTTCCACGCTCAGGCGGCCGCCTACCAGCAATGCCCGCAGCGTCGGACGGCCACCGCCAACCACTggg                                                              >  8:176517/1‑149 (MQ=255)                                                                                gCCTGTTGCAGGCGAAGTACAGCCTGGCGTGCCTGGCTGCCCAGTTCGGCGAGGTCCAAGCCAGGAATCGCATCGTTTTCCACGCTCAGGCGGCCGCCTACCAGCAATGCCCGCAGCGTCGGACGGCCACCGCCAACCACTGGGGCGAt                                                         <  7:280750/149‑1 (MQ=255)                                                                                  cTGTTGCAGGCGAAGTACAGCCTGGCGTGCCTGGCTGCCCAGTTCGGCGAGGTCCAAGCCAGGAATCGCATCGTTTTCCACGCTCAGGCGGCCGCCTACCAGCAATGCCCGCAGCGTCGGACGGCCACCGCCAACCACTGGGGCGATGc                                                       >  1:185710/1‑149 (MQ=255)                                                                                     ttGCAGGCGAAGTACAGCCTGGCGTGCCTGGCTGCCCAGTTCGGCGAGGTCCAAGCCAGGAATCGCATCGTTTTCCACGCTCAGGCGGCCGCCTACCAGCAATGCCCGCAGCGTCGGACGGCCACCGCCAACCACTGGGGCGATGcc                                                      <  1:169240/147‑1 (MQ=255)                                                                                     ttGCAGGCGAAGTACAGCCTGGCGTGCCTGGCTGCCCAGTTCGGCGAGGTCCAAGCCAGGAATCGCATCGTTTTCCACGCTCAGGCGGCCGCCTACCAGCAATGCCCGCAGCGTCGGACGGCCACCGCCAACCACTGGGGCGATGCCCa                                                    <  8:126380/149‑1 (MQ=255)                                                                                         aGGCGAAGTACAGCCTGGCGTGCCTGGCTGCCCAGTTCGGCGAGGTCCAAGCCAGGAATCGCATCGTTTTCCACGCTCAGGCGGCCGCCTACCAGCAATGCCCGCAGCGTCGGACGGCCACCGCCAACCACTGGGGCGATGCCCAGAt                                                 >  4:27661/1‑148 (MQ=255)                                                                                            cGAAGTACAGCCTGGCGTGCCTGGCTGCCCAGTTCGGCGAGGTCCAAGCCAGGAATCGCATCGTTTTCCACGCTCAGGCGGCCGCCTACCAGCAATGCCCGCAGCGTCGGACGGCCACCGCCAACCACTGGGGCGATGCCCAGATCATg                                             <  2:185710/149‑1 (MQ=255)                                                                                            aactgggcAGCCAGGCACGCCAGGCTGCCCAGTTCGGCGAGGTCCAAGCCAGGAATCGCATCGTTTTCCACGCTCAGGCGGCCGCCTACCAGCAATGCCCGCAGCGTCGGACGGCCACCGCCAACCACTGGGGCGATGCCCAGATCATg                                             >  5:306145/8‑149 (MQ=255)                                                                                             gAAGTACAGCCTGGCGTGCCTGGCTGCCCAGTTCGGCGAGGTCCAAGCCAGGAATCGCATCGTTTTCCACTCTCAGGCGGCCGCCTACCAGCAATGCCCGCAGCGTCGGACGGCCACCGCCAACCACTGGGGCGATGCCCAGATCAttc                                            <  8:3209/149‑3 (MQ=255)                                                                                                 ggcAGCCAGGCACGCCAGGCTGCCCAGTTCGGCGAGGTCCAAGCCAGGAATCGCATCGTTTTCCACGCTCAGGCGGCCGCCTACCAGCAATGCCCGCAGCGTCGGACGGCCACCGCCAACCACTGGGGCGATGCCCAGATCATGCAGAc                                        >  3:304057/3‑149 (MQ=255)                                                                                                   cAGCCTGGCGTGCCTGGCTGCCCAGTTCGGCGAGGTCCAAgccaggctgtacttcgcctgcaacaggccgcgggggtacgcgcatgagctggacgcctctgcaggtgc                                                                               >  8:295463‑M2/1‑40 (MQ=255)                                                                                                   cAGCCTGGCGTGCCTGGCTGCCCAGTTCGGCGAGGTCCAAgccaggctgtacttcgcctgcaacaggccgcgggggtacgcgcatgagctggacgcctctgcaggtgc                                                                               <  7:295463‑M2/108‑69 (MQ=255)                                                                                                    aGCCTGGCGTGCCTGTCTGCCCAGTTCGGCGAGGTCCAAGCCAGGAATCGCATCGTTTTCCACGCTCAGGCGGCCGCCTACCAGCAATGCCCGCAGCGTCGGACGGCCACCGCCAACCACTGGGGCGATGCCCAGATCATGCAGACCg                                      >  1:56192/1‑148 (MQ=255)                                                                                                    aGCCTGGCGTGCCTGGCTGCCCAGTTCGGCGAGGTCCAAGCCAGGAATCGCATCGTTTTCCACGCTCAGGCGGCCGCCTACCAGCAATGCCCGCAGCGTCGGACGGCCACCGCCAACCACTGGGGCGATGCCCAGATCATGCAGACCg                                      >  1:258642/1‑148 (MQ=255)                                                                                                     gCCTGGCGTGCCTGGCTGCCCAGTTCGGCGAGGTCCAAGCCAGGAATCGCATCGTTTTCCACGCTCAGGCGGCCGCCTACCAGCAATGCCCGCAGCGTCGGACGGCCACCGCCaa                                                                      >  7:49559/1‑115 (MQ=255)                                                                                                     gCCTGGCGTGCCTGGCTGCCCAGTTCGGCGAGGTCCAAGCCAGGAATCGCATCGTTTTCCACGCTCAGGCGGCCGCCTACCAGCAATGCCCGCAGCGTCGGACGGCCACCGCCaa                                                                      <  8:49559/115‑1 (MQ=255)                                                                                                     gCCTGGCGTGCCTGGCTGCCCAGTTCGGCGAGGTCCAAGCCAGGAATCGCATCGTTTTCCACGCTCAGGCGGCCGCCTACCAGCAATGCCCGCAGCGTCGGACGGCCACCGCCAACCACTGGGACGATGCCCAGATCATGCAGACCGaa                                    <  6:117473/149‑1 (MQ=255)                                                                                                      ccTGGCGTGCCTGGCTGCCCAGTTCGGCGAGGTCCAAgccaggctgtacttcgcctgcaacaggccgcgggggtacgcgcatgagctggacgcctctgcaggtgcgggccctgcgccttgaagccgacgacgtgctgggtgtggaactg                                   <  1:306193‑M2/149‑113 (MQ=255)                                                                                                            gTGCCTGGCTGCCCAGTTCGGCGAGGTCCAAGCCAGGAATCGCATCGTTTTCCACGCTCAGGCAGCCGCCTACCAGCAATGCCCGCAGCGTCGGACGGCCACCGCCAACCACTGGGGCGATGCCCAGATCATGCAGACCGAAGTAGCgg                             >  1:94903/1‑149 (MQ=255)                                                                                                               ccTGGCTGCCCAGTTCGGCGAGGTCCAAGCCAGGAATCGCATCGTTTTCCACGCTCAGGCGGCCGCCTACCAGCAATGCCCGCAGCGTCGGACGGCCACCGc                                                                         >  2:326258/1‑102 (MQ=255)                                                                                                               ccTGGCTGCCCAGTTCGGCGAGGTCCAAGCCAGGAATCGCATCGTTTTCCACGCTCAGGCGGCCGCCTACCAGCAATGCCCGCAGCGTCGGACGGCCACCGc                                                                         <  1:326258/102‑1 (MQ=255)                                                                                                                cTGGCTGCCCAGTTCGGCGAGGTCCAAGCCAGGAATCGCATCGTTTTCCACGCTCAGGCGGCCGCCTACCAGCAATGCCCGCAGCGTCGGACGGCCACCGCCAACCACTGGGGCGATGCCCAGATCATGCAGACCGAAGTAGCGGGGtt                         <  5:87479/149‑1 (MQ=255)                                                                                                                   gCTGCCCAGTTCGGCGAGGTCCAAGCCAGGAATCGCATCGTTTTCCACGCTCAGGCGGCCGCCTACCAGCAATGCCCGCAGCGTCGGACGGCCACCGCCAACCACTGGGGCGATGCCCAGATCATGCAGACCGAAGTAGCGGGGTTg                        <  4:44897/147‑1 (MQ=255)                                                                                                                       cccAGTTCGGCGAGGTCCAAGCCAGGAATCGCATCGTTTTCCACGCTCAGGCGGCCGCCTACCAGCAATGCCCGCAGCGTCGGACGGCCACCGCCAACCACTGGGGCGATGCCCAGATCATGCAGACCGAAGTAGCGGGGTTGATCAAg                  >  4:40958/1‑149 (MQ=255)                                                                                                                         cAGTTCGGCGAGGTCCAAGCCAGGAATCGCATCGTTTTCCACGCTCAGGCGGCCGCCTACCAGCAATGCCCGCAGCGTCGGACGGCCACCGCCAACCACTGGGGCGATGCCCAGATCATGCAGACCGTAGTAGCGGGGTTGATCAAGGc                >  5:105600/1‑149 (MQ=255)                                                                                                                         cAGTTCGGCGAGGTCCAAGCCAGGAATCGCATCGTTTTCCACGCTCAGGCGGCCGCCTACCAGCAATGCCCGCAGCGTCGGACGGCCACCGCCAACCACTGGGGCGATGCCCAGATCATGCAGACCGAAGTAGCGGGGTTGATCAAGGc                >  7:212640/1‑149 (MQ=255)                                                                                                                           gTTCGGCGAGGTCCAAGCCAGGAATCGCATCGTTTTCCACGCTCAGGCGGCCGCCTACCAGCAATGCCCGCAGCGTCGGACGGCCACCGCCAACCACTGGGGCGATGCCCAGATCATGCAGACCGAAGTAGCGGGGTTGATCAAGGCGa              >  1:160277/1‑149 (MQ=255)                                                                                                                              cGGCGAGGTCCAAGCCAGGAATCGCATCGTTTTCCACGCTCAGGCGGCCGCCTACCAGCAATGCCCGCAGCGTCGGACGGCCACCGCCAACCACTGGGGCGATGCCCAGATCATGCAGACCGAAGTAGCGGGGTTGATCAAGGCGATa            <  6:306145/148‑1 (MQ=255)                                                                                                                                gCGAGGTCCAAGCCAGGAATCGCATCGTTTTCCACGCTCAGGCGGCCGCCTACCAGCAATGCCCGCAGCGTCGGACGGCCACCGCCAACCACTGGGGCGATGCCCAGATCATGCAGACCGAAGTAGCGGGGTTGATCAAGGCGa              >  3:182717/1‑144 (MQ=255)                                                                                                                                   aGGTCCAAGCCAGGAATCGCATCGTTTTCCACGCTCAGGCGGCCGCCTACCAGCAATGCCCGCAGCGTCGGACGGCCACCGCCAACCACTGGGGCGATGCCCAGATCATGCAGACCGAAGTAGCGGGGTTGATCAAGGCGATAGATCGc      <  7:176517/149‑1 (MQ=255)                                                                                                                                       ccAAGCCAGGAATCGCATCGTTTTCCACGCTCAGGCGGCCGCCTACCAGCAATGCCCGCAGCGTCGGACGGCCACCGCCAACCACTGGGGCGATGCCCAGATCATGCAGACCGAAGTAGCGGGGTTGATCAAGGCGATAGATCGCCAgg  >  5:124520/1‑149 (MQ=255)                                                                                                                                          |                                                                                                                                                  CCACACCCAGCACGTCGTCGGCTTCAAGGCGCAGGGCCCGCACCTGCAGAGGCGTCCAGCTCATGCGCGTACCCCCGCGGCCTGTTGCAGGCGAAGTACAGCCTGGCGTGCCTGGCTGCCCAGTTCGGCGAGGTCCAAGCCAGGAATCGCATCGTTTTCCACGCTCAGGCGGCCGCCTACCAGCAATGCCCGCAGCGTCGGACGGCCACCGCCAACCACTGGGGCGATGCCCAGATCATGCAGACCGAAGTAGCGGGGTTGATCAAGGCGATAGATCGCCAGG  >  NC_002947/3641714‑3641996

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.