New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | 4144914 = | 53 (1.020) | 4 (0.080) | 4/250 | NT | 7.6% | coding (467/753 nt) | PP_3649 | GntR family transcriptional regulator |
? | NC_002947 | 4144974 = | 48 (0.980) | coding (527/753 nt) | PP_3649 | GntR family transcriptional regulator |
CGCGAAGCACTGGAAGAAGGCGAGTTGCAACAGGTGCTGGACTCGGTACAAGGTTTCTACGATGTGCTGCTGGAAGGCTCTGGCAACCAGGTGGCGGCCCAGCAGCTGCGCCAGTTGCAAGCACGCATCAGCTACCTGCGCGCCACCTCGGTATCGCAGGAAAACCGCCGCGGCGCCAGC‑AACCGCGAAATGGAAAAGATCGTCGAGGCCATC‑AAGGGCGGCGACCCGCTGGTGGCCCACCAGGCCTCGGTCGACCACGTCCGCGCCGCCGCCAAGGTGGCCC > NC_002947/4144826‑4145108 | gccaccagcgggtcgccgcccttgatggcctcgacgatcttttccatttcgcggttgctggcgccgcggcggttttcctgcgataccgAGGTGGCGGCCCAGCAGCTGCGCCAGTTGCAAGCACGCAACAGCTACCTGCGCGCCACCTc > 8:237073‑M1/89‑149 (MQ=255) ccaccagcgggtcgccgcccttgatggcctcgacgatcttttccatttcgcggttgctggcgccgcggcggttttcctgcgataccgAGGTGGCGGCCCAGCAGCTGCGCCAGTTGCAAGCACGCATCAGCTACCTGCGCGCCACCTCg > 6:113885‑M1/88‑149 (MQ=255) cACTGGAAGAAGGCGAGTTGCAACAGGTGCTGGACTCGGTACAAGGTTTCTACGATGTGCTGCTGGAAGGCTCTGGCAACCAGGTGGCGGCCCAGCAGCTGCGCCAGTTGCAAGCACGCATCAGCTACCTGCGCGCCACCTCGGTATCg < 5:46959/149‑1 (MQ=255) tGGAAGAAGGCGAGTTGCAACAGGTGCTGGACTCGGTACAAGGTTTCTACGATGTGCTGCTGGAAGGCTCTGGCAACCAGGTGGCGGCCCAGCAGCTGCGCCAGTTGCAAGCACGCATCAGCTACCTGCGCGCCACCTCGGTATCGCAg > 4:48623/1‑149 (MQ=255) gaagaaGGCGAGTTGCAACAGGTGCTGGACTCGGTACAAGGTTTCTACGATGTGCTGCTGGAAGGCTCTGGCAACCAGGTGGCGGCCCAGCAGCTGCGCCAGTTGCAAGCACGCATCAGCTACCTGCGCGCCACCTCGGTATCGCAgg > 5:280630/1‑148 (MQ=255) gaagaaGGCGAGTTGCAACAGGTGCTGGACTCGGTACAAGGTTTCTACGATGTGCTGCTGGAAGGCTCTGGCAACCAGGTGGCGGCCCAGCAGCTGCGCCAGTTGCAAGCACGCATCAGCTACCTGCGCGCCACCTCGGTATCGCAg < 8:247373/147‑1 (MQ=255) cAACAGGTGCTGGACTCGGTACAAGGTTTCTACGATGTGCTGCTGGAAGGCTCTGGCAACCAGGTGGCGGCCCAGCAGCTGCGCCAGTTGCAAGCACGCATCAGCTACCTGCGCGCCACCTCGGTATCg < 7:139866/129‑1 (MQ=255) cAACAGGTGCTGGACTCGGTACAAGGTTTCTACGATGTGCTGCTGGAAGGCTCTGGCAACCAGGTGGCGGCCCAGCAGCTGCGCCAGTTGCAAGCACGCATCAGCTACCTGCGCGCCACCTCGGTATCg > 8:139866/1‑129 (MQ=255) cAACAGGTGCTGGACTCGGTACAAGGTTTCTACGATGTGCTGCTGGAAGGCTCTGGCAACCAGGTGGCGGCCCAGCAGCTGCGCCAGTTGCAAGCACGCATCAGCTACCTGCGCGCCACCTCGGTATCGCAGGAAAACCGCCGCGgcgc > 1:148973/1‑149 (MQ=255) aaCAGGTGCTGGACTCGGTACAAGGTTTCTACGATGTGCTGCTGGAAGGCTCTGGCAACCAGGTGGCGGCCCAGCAGCTGCGCCAGTTGCAAGCACGCATCAGCTACCTGCGCGCCACCTCGGTATCGCAGGAAAACCGCCGCGgcgc > 1:236019/1‑148 (MQ=255) aCAGGTGCTGGACTCGGTACAAGGTTTCTACGATGTGCTGCTGGAAGGCTCTGGCAACCAGGTGGCGGCCCAGCAGCTGCGCCAGTTGCAAGCACGCATCAGCTACCTGCGCGCCACCTCGGTATCGCAGGAAAACCGCCGCGGCGCCa < 8:76622/149‑1 (MQ=255) gTGCTGGACTCGGTACAAGGTTTCTACGATGTGCTGCTGGAAGGCTCTGGCAACCAGGTGGCGGCCCAGCAGCTGCGCCAGTTGCAAGCACGCATCAGCTACCTGCGCGCCACCTCGGTATCGCAGGAAAACCGCCGCGGCGCCAGC‑a < 6:237280/148‑1 (MQ=255) gTGCTGGACTCGGTACAAGGTTTCTACGATGTGCTGCTGGAAGGCTCTGGCAACCAGGTGGCGGCCCAGCAGCTGCGCCAGTTGCAAGCACGCATCAGCTACCTGCGCGCCACCTCGGTATCGCAGGAAAACCGCCGCGGCGCCAGC‑a > 5:237280/1‑148 (MQ=255) cTGGACTCGGTACAAGGTTTCTACGATGTGCTGCTGGAAGGCTCTGGCAACCAGGTGGCGGCCCAGCAGCTGCGCCAGTTGCAAGCACGCATCAGCTACCTGCGCGCCACCTCGGTATCGCAGGAAAACCGCCGCGGCGCCAGC‑AAcc < 2:148973/148‑1 (MQ=255) gACTCGGTACAAGGTTTCTACGATGTGCTGCTGGAAGGCTCTGGCAACCAGGTGGCGGCCCAGCAGCTGCGCCAGTTGCAAGCACGCATCAGCTACCTGCGCGCCACCTCGGTATCGCAGGAAAACCGCCGCGGCGCCAGC‑AACcgcg > 8:11814/1‑148 (MQ=255) gACTCGGGACAAGTTTGCTACGATGTGCTGCTGGAAGGCTCTGGCAACCAGGTGGCGGCCCAGCAGCTGCGCCAGTTGCAAGCACGCATCAGCTACCTGCGCGCCACCTCGGTATCGCAGGAAAACCGCCGCGGCGCCAGC‑AACcgc < 6:224113/147‑1 (MQ=255) cTCGGTACAAGGTTTCTACGATGTGCTGCTGGAAGGCTCTGGCAACCAGGTGGCGGCCCAGCAGCTGCGCCAGTTGCAAGCACGCATCAGCTACCTGCGCGCCACCTCGGTATCGCAGGAAAACCGCCGCGGCGCCAGC‑AACCGCGaaa > 5:209458/1‑149 (MQ=255) cTCGGTACAAGGTTTCTACGATGTGCTGCTGGAAGGCTCTGGCAACCAGGTGGCGGCCCAGCAGCTGCGCCAGTTGCAAGCACGCATCAGCTACCTGCGCGCCACCTCGGTATCGCAGGAAAACCGCCGCGGCGCCAGC‑AACCGCGaaa < 5:170414/149‑1 (MQ=255) cAAGGTTTCTACGATGTGCTGCTGGAAGGCTCTGGCAACCAGGTGGCGGCCCAGCAGCTGCGCCAGTTGCAAGCACGCATCAGCTACCTGCGCGCCACCTCGGTATCGCAGGAAAACCGCCGCGGCGCCAGC‑AACCGCGAAATGGaa > 8:97310/1‑147 (MQ=255) cAAGGTTTCTACGATGTGCTGCTGGAAGGCCCTGGCAACCAGGTGGCGGCCCAGCAGCTGCGCCAGTTGCAAGCACGCATCAGCTACCTGCGCGCCACCTCGGTATCGCAGGAAAACCGCCGCGGCGCCAGC‑AACCGCGAAATGGaaa < 6:284996/148‑1 (MQ=255) ggTTTCTACGATGTGCTGCTGGAAGGCTCTGGCAACCAGGTGGCGGCCCAGCAGCTGCGCCAGTTGCAAGCACGCATCAGCTACCTGCGCGCCACCTCGGTATCGCAGGAAAACCGCCGCGGCGCCAGC‑AACCGCGAAATGGaa > 3:179185/1‑144 (MQ=255) cGATGTGCTGCTGGAAGGCTCTGGCAACCAGGTGGCGGCCCAGCAGCTGCGCCAGTTGCAAGCACGCATCAGCTACCTGCGCGCCACCTCGGTATCGCAGGAAAACCGCCGCGGCGCCAGC‑AACCGCGAAATGGAAAAGAtcgtcg < 2:298707/146‑1 (MQ=255) tgtgCTGCTGGAAGGCTCTGGCAACCAGGTGGCGGCCCAGCAGCTGCGCCAGTTGCAAGCACGCATCAGCTACCTGCGCGCCACCTCGGTAGCGCAGGAAAACCGCCGCGGCGCCAGC‑AACCGCGAAATGGAAAAGATCGTCGAGGCCa < 5:223501/149‑1 (MQ=255) tgctgcTGGAAGGCTCTGGCAACCAGGTGGCGGCCCAGCAGCTGCGCCAGTTGCAAGCACGCATCAGCTACCTGCGCGCCACCTCGGTATCGCAGGAAAACCGCCGCGGCGCCAGC‑AACCGCGAAATGGAAAAGATCGTCGAGGCCATc < 6:280630/149‑1 (MQ=255) tgctgcTGGAAGGCTCTGGCAACCAGGTGGCGGCCCAGCAGCTGCGCCAGTTGCAAGCACGCATCAGCTACCTGCGCGCCACCTCGGTATCGCAGGAAAACCGCCGCGGCGCCAGC‑AACCGCGAAATGGAAAAGATCGTCGAGGCCATc < 2:236019/149‑1 (MQ=255) gatgctgGAAGGCTCTGGCAACCAGGTGGCGGCCCAGCAGCTGCGCCAGTTGCAAGCACGCATCAGCTACCTGCGCGCCACCTCGGTATCGCAGGAAAACCGCCGCGGCGCCAGC‑AACCGCGAAATGGAAAAGATCGTCGAGGCCATc > 4:179057/3‑148 (MQ=255) ggAAGGCTCTGGCAACCAGGTGGCGGCCCAGCAGCTGCGCCAGTTGCAAGCACGCATCAGCTACCTGCGCGCCACCTCGGTATCGCAGGAAAACCGCCGCGGCGCCAGC‑AACCGCGAAATGGAAAAGa < 4:50926/128‑1 (MQ=255) ggAAGGCTCTGGCAACCAGGTGGCGGCCCAGCAGCTGCGCCAGTTGCAAGCACGCATCAGCTACCTGCGCGCCACCTCGGTATCGCAGGAAAACCGCCGCGGCGCCAGC‑AACCGCGAAATGGAAAAGa > 3:50926/1‑128 (MQ=255) gAAGGCTCTGGCAACCAGGTGGCGGCCCAGCAGCTGCGCCAGTTGCAAGCACGCATCAGCTACCTGCGCGCCACCTCGGTATCGCAGGAAAACCGCCGCGGCGCCAGC‑AACCGCGAAATGGAAAAGATCGTCGAGGCCATC‑a > 2:74471/1‑142 (MQ=255) gAAGGCTCTGGCAACCAGGTGGCGGCCCAGCAGCTGCGCCAGTTGCAAGCACGCATCAGCTACCTGCGCGCCACCTCGGTATCGCAGGAAAACCGCCGCGGCGCCAGC‑AACCGCGAAATGGAAAAGATCGTCGAGGCCATC‑a < 1:74471/142‑1 (MQ=255) gAAGGCTCTGGCAACCAGGTGGCGGCCCAGCAGCTGCGCCAGTTGCAAGCACGCATCAGCTACCTGCGCGCCACCTCGGTATCGCAGGAAAACCGCCGCGGCGCCAGC‑AACCGCGAAATGGAAAAGATCGTCGAGGCCATC‑AAGggcgg > 8:115360/1‑149 (MQ=255) aGGCTCTGGCAACCAGGTGGCGGCCCAGCAGCTTAGCCAGTTGCAAGCACGCATCAGCTACATGCGAGCCACCTCGGTATCGCAGGAAAACCGCCGCGGCGCCAGC‑AACCGCGAAATGGAAAAGATCGTCGAGGCCATC‑AAGggcggc > 2:97972/1‑148 (MQ=255) ggCTCTGGCAACGAGGTGGCGGCCCAGCAGCTGCGCCAGTTGCAAGCACGCATCAGCTACCTGCGCGCCACCTCGGTATCGCAGGAAAACCGCCGCGGCGCCAGC‑AACCGCGAAATGGAAAAGATCGTCGAGGCCATC‑AAGGGCGGCGa < 5:206456/149‑1 (MQ=255) gCTCTGGCAACCAGGTGGCGGCCCAGCAGCTGCGCCAGTTGCAAGCACGCATCAGCTACCTGCGCGCCACCTCGGTATCGCAGGAAAACCGCCGCGGCGCCAGC‑AACCGCGAAATGGAAAAGATCGTCGAGGCCATC‑AAGGGCGGCGAc < 6:260506/149‑1 (MQ=255) ctctGGCAACCAGGTGGCGGCCCAGCAGCTGCGCCAGTTGCAAGCACGCATCAGCTACCTGCGCGCCACCTCGGTATCGCAGGAAAACCGCCGCGGCGCCAGC‑AACCGCGAAATGGAAAAGATCGTCGAGGCCATC‑AAGGGCGGCGAcc < 2:182618/149‑1 (MQ=255) tctGGCAACCAGGTGGCGGCCCAGCAGCTGCGCCAGTTGCAAGCACGCATCAGCTACCTGCGCGCCACCTCGGTATCGCAGGAAAACCGCCGCGGCGCCAGC‑AACCGCGAAATGGAAAAGATCGTCGAGGCCATC‑AAGGGCGGCGAcc > 5:284455/1‑148 (MQ=255) tctGGCAACCAGGTGGCGGCCCAGCAGCTGCGCCAGTTGCAAGCACGCATCAGCTACCTGCGCGCCACCTCGGTATCGCAGGAAAACCGCCGCGGCGCCAGC‑AACCGCGAAATGGAAAAGATCGTCGAGGCCATC‑AAGGGCGGCGAc < 6:284455/147‑1 (MQ=255) gCAACCAGGTGGCGGCCCAGCAGCTGCGCCAGTTGCAAGCACGCATCAGCTACCTGCGCGCCACCTCGGTATCGCAGGAAAACCGCCGCGGCGCCAGC‑AACCGCGAAATGGAAAAGATCGTCGAGGCCATC‑AAGGGCGGCGACCCg < 3:179057/146‑1 (MQ=255) aCCAGGTGGCGGCCCAGCAGCTGCGCCAGTTGCAAGCACGCATCAGCTACCTGCGCGCCACCTCGGTATCGCAGGAAAACCGCCGCGGCGCCAGC‑AACCGCGAAATGGAAAAGATCGTCGAGGCCATC‑AAGGGCGGCGACCCGCtggtg > 6:297680/1‑149 (MQ=255) cgaggtggcgcgcaggtagctgatgcgtgcttgcaactggcgcagctgctgggccgccacctCGGTATCGCAGGAAAACCGCCGCGGCGCCAGC‑AACCGCGAAATGGAAAAGATCGTCGAGGCCATC‑AAGGGCGGCGACCCGCtggtgg > 6:113885‑M2/63‑149 (MQ=255) ccAGGTGGCGGCCCAGCAGCTGCGCCAGTTGCAAGCACGCATCAGCTACCTGCGCGCCACCTCGGTATCGCAGGAAAACCGCCGCGGCGCCAGC‑AACCGCGAAATGGAAAAGATCGTCGAGGCCATC‑AAGGGCGGCGACCCGCtggtgg < 5:222649/149‑1 (MQ=255) gaggtggcgcgcaggtagctgttgcgtgcttgcaactggcgcagctgctgggccgccacctCGGTATCGCAGGAAAACCGCCGCGGCGCCAGC‑AACCGCGAAATGGAAAAGATCGTCGAGGCCATC‑AAGGGCGGCGACCCGCTGGTGGc > 8:237073‑M2/62‑149 (MQ=255) gcccatCGGCCCAGCAGCTGCGCCAGTTGCAAGCACGCATCAGCTACCTGCGCGCCACCTCGGTATCGCAGGAAAACCGCCGCGGCGCCAGC‑AACCGCGAAATGGAAAAGATCGTCGAGGCCATC‑AAGGGCGGCGACCCGCTGGTGGcc > 6:287630‑M1/7‑149 (MQ=255) AGGTGGCGGCCCAGCAGCTGCGCCAGTTGCAAGCACGCATCAGCTACCTGCGCGCCACCTCGGTATCGCAGGAAAACCGCCGCGGCGCCAGC‑AACCGCGAAATGGAAAAGATCGTCGAGGCCATC‑AAGGGCGGCGACCCGCTGGTGGcc > 3:48623‑M1/1‑149 (MQ=255) CGGCCCAGCAGCTGCGCCAGTTGCAAGCACGCATCAGCTACCTGCGCGCCACCTCGGTATCGCAGGAAAACCGCCGCGGCGCCAGC‑AACCGCGAAATGGAAAAGATCGTCGAGGCCATC‑AAGGGCGGCGACCCGCTGGTGGCCCACCAg > 7:97310‑M1/1‑149 (MQ=255) ccAGCAGCTGCGCCAGTTGCAAGCACGCATCAGCTACCTGCGCGCCACCTCGGTATCGCAGGAAAACCGCCGCGGCGCCAGC‑AACCGCGAAATGGAAAAGATCGTCGAGGCCATC‑AAGGGCGGCGACCCGCTGGTGGCCCACCAg < 7:105207/145‑1 (MQ=255) ccAGCAGCTGCGCCAGTTGCAAGCACGCATCAGCTACCTGCGCGCCACCTCGGTATCGCAGGAAAACCGCCGCGGCGCCAGC‑AACCGCGAAATGGAAAAGATCGTCGAGGCCATC‑AAGGGCGGCGACCCGCTGGTGGCCCACCAg > 8:105207/1‑145 (MQ=255) ccAGCAGCTGCGCCAGTTGCAAGCACGCATCAGCTACCTGCGCGCCACCTCGGTATCGCAGGAAAACCGCCGCGGCGCCAGC‑AACCGCGAAATGGAAAAGATCGTCGAGGCCATC‑AAGGGCGGCGACCCGCTGGTGGCCCACCAGGCCt < 5:297680/149‑1 (MQ=255) cagcTGCGCCAGTTGCAAGCACGCATCAGCTACCTGCGCGCCACCTCGGTATCGCAGGAAAACCGCCGCGGCGCCAGC‑AACCGCGAAATGGAAAAGATCGTCGAGGCCATC‑AAGGGCGGCGACCCGCTGGTGGCCCACCAGGCCTCGGt > 4:196318/1‑149 (MQ=255) gctgttgcgtgcttgcaactggcgcagctgctgggccgccacctCGGTATCGCAGGAAAACCGCCGCGGCGCCAGC‑AACCGCGAAATGGAAAAGATCGTCGAGGCCATC‑AAGGGCGGCGACCCGCTGGTGGCCCACCAGGCCTCGGTc < 7:237073‑M2/104‑1 (MQ=255) gcTGCGCCAGTTGCAAGCACGCATCAGCTACCTGCGCGCCACCTCGGTATCGCAGGAAAACCGCCGCGGCGCCAGC‑AACCGCGAAATGGAAAAGATCGTCGAGGCCATC‑AAGGGCGGCGACCCGCTGGTGGCCCACCAGGCCTCg < 4:148235/145‑1 (MQ=255) gcTGCGCCAGTTGCAAGCACGCATCAGCTACCTGCGCGCCACCTCGGTATCGCAGGAAAACCGCCGCGGCGCCAGC‑AACCGCGAAATGGAAAAGATCGTCGAGGCCATC‑AAGGGCGGCGACCCGCTGGTGGCCCACCAGGCCTCg > 3:148235/1‑145 (MQ=255) cAAGCACGCATCAGCTACCTGCGCGCAACCTCGGTATCGCAGGAAAACCGCCGCGGCGCCAGC‑AACCGCGAAATGGAAAAGATCGTCGAGGCCATC‑AAGGGCGCCGCCCAGCTGGTGGCCCACAAGGCAACGGTCGACCACGTCCccgc > 8:133340/1‑149 (MQ=255) aaGCACGCATCAGCTACCTGCGCGCCACCTCGGTATCGCAGGAAAACCGCCGCGGCGCCAGC‑AACCGCGAAATGGAAAAGATCGTCGAGGCCATC‑AAGGGCGGCGACCCGCTGGTGGCCCACCAGGCCTCGGTCGACCACGTCCGcgcc > 6:30150/1‑149 (MQ=255) aGCTACCTGCGCGCCACCTCGGTATCGCAGGAAAACCGCCGCGGCGCCAGC‑AACCGCGAAATGGAAAAGATCGTCGAGGCCATC‑AAGGGCGGCGACCCGCTGGTGGCCCACCAGGCCTCGGTCGACCACGTCCGCGCCGCCGCCAAgg < 7:11814/148‑1 (MQ=255) gCTACCTGCGCGCCACCTCGTTATCGCAGGAAAACCGCCGCGGCGCCAGC‑AACCGCGAAATGGAAAAGATCGTCGAGGCCATCAAATGGCGGCGACCCGCTGGTGGCCCACCAGTCCTCGGGCGACCACGTCCGCGCCGCCGCCAAGGt < 1:97972/149‑1 (MQ=255) ctgctgggccgccacctCGGTATCGCAGGAAAACCGCCGCGGCGCCAGC‑AACCGCGAAATGGAAAAGATCGTCGAGGCCATC‑AAGGGCGGCGACCCGCTGGTGGCCCACCAGGCCTCGGTCGACCACGTCCGCGCCGCCGCCAAGGTgg < 5:113885‑M2/132‑1 (MQ=255) cTGCGCGCCACCTCGGTATCGCAGGAAAACCGCCGCGGCGCCAGCGAACCGCGAAATGGAAAAGATCGTCGAGGCCATC‑AAGGGCGGCGACCCGCTGGTGGCCCACCAGGCCTCGGTCGACCACGTCCGCGCCGCCGCCAAGGTGGccc > 1:67129/1‑149 (MQ=255) | CGCGAAGCACTGGAAGAAGGCGAGTTGCAACAGGTGCTGGACTCGGTACAAGGTTTCTACGATGTGCTGCTGGAAGGCTCTGGCAACCAGGTGGCGGCCCAGCAGCTGCGCCAGTTGCAAGCACGCATCAGCTACCTGCGCGCCACCTCGGTATCGCAGGAAAACCGCCGCGGCGCCAGC‑AACCGCGAAATGGAAAAGATCGTCGAGGCCATC‑AAGGGCGGCGACCCGCTGGTGGCCCACCAGGCCTCGGTCGACCACGTCCGCGCCGCCGCCAAGGTGGCCC > NC_002947/4144826‑4145108 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |