New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4236304	47 (0.900)	4 (0.080)	4/256	NT	7.9%	coding (469/936 nt)	catA‑I	catechol 1,2‑dioxygenase
	?	NC_002947	= 4236329	48 (0.960)					coding (444/936 nt)	catA‑I	catechol 1,2‑dioxygenase

ATACCCGGACGGCACGATCGAGCGCGCGCGGTAGCGGCCCTCGGCATCGGTGATGATACGCCGACGCAGGTTGAACTCGGACTGGGTCGAATCGAAGTACGAATAGGTGCCCTGGGTATTGGCGTGCCACAGGTCGACGGTGGCACCGGCCAACGGCTTGCCGTCGGCATCGAACACCTGGCCCTGAAGGAACATCACCACGCCTGGGTCAGTGCCGTCGTCCATGCGCGCTTCGCCCTGGGCCAGCGGCGCCCCGGCAACGTACAACGGGCCTTCGATGGTGCGCGGGGTGCCG  >  NC_002947/4236182‑4236476                                                                                                                                                    |                                                                                                                                                    aTACCCGGACGGCACGATCGAGCGCGCGCGGTAGCGGCCCTCGGCATCGGTGATGATACGCCGACGCAGGTTGAACTCGGACTGGGTCGAATCGAAGTACGAATAGGTGCCCTGGGTATTGGCGTGCCACAGGTCGACGGTGGCACCGg                                                                                                                                                    <  1:145471‑M2/149‑2 (MQ=255)             cACGATCGAGCGCGCGCGGTAGCGGCCCTCGGCATCGGTGATGATACGCCGACGCAGGTTGAACTCGGACTGGGTCGAATCGAAGTACGAATAGGTGCCCTGGGTATTGGCGTGCCACAGGTCGACGGTGGCACCGGCCAACGGCTTGc                                                                                                                                        >  3:56560/1‑149 (MQ=255)             cACGATCGAGCGCGCGCGGTAGCGGCCCTCGGCATCGGTGATGATACGCCGACGCAGGTTGAACTCGGACTGGGTCGAATCGAAGTACGAATAGGTGCCCTGGGTATTGGCGTGCCACAGGTCGACGGTGGCACCGGCCAACGGCTTGc                                                                                                                                        >  2:47904/1‑149 (MQ=255)                gATCGAGCGCGCGCGGTAGCGGCCCTCGGCATCGGTGATGATACGCCGACGCAGGTTGAACTCGGACTGGGTCGAATCGAAGTACGAATAGGTGCCCTGGGTATTGGCGTGCCACAGGTCGACGGTGGCACCGGCCAACGGCTTGCCGt                                                                                                                                     >  8:90912/1‑149 (MQ=255)                gATCGAGCGCGCGCGGTAGCGGCCCTCGGCATCGGTGATGATACGCCGACGCAGGTTGAACTCGGACTGGGTCGAATCGAAGTACGAATAGGTGCCCTGGGTATTGGCGTGCCACAGGTCGACGGTGGCACCGGCCAACGGCTTGCCGt                                                                                                                                     <  4:123570/149‑1 (MQ=255)                gATCGAGCGCGCGCGGTAGCGGCCCTCGGCATCGGCGATGATACGCCGACGCAGGTTGAACTCGGACTGGGTCGAATCGAAGTACGAATAGGTGCCCTGGGTATTGGCGTGCCACAGGTCGACGGTGGCACCGGCCAACGGCTTGCCGt                                                                                                                                     >  5:87210/1‑149 (MQ=255)                    gAGCGCGCGCTGTAGCGGCCCTCGGCATCGATGATGATACGCCGACGCAGGTTGAACTCGGACTGGGTCGAATCGAAGTACGAATAGGTGCCCTGGGTATTGGCGTGCCACAGGTCGACGGTGGCACCGGCCAACGGCTTGCCGTCgg                                                                                                                                  <  8:66178/148‑1 (MQ=255)                    gAGCGCGCGCGGTAGCGGCCCTCGGCATCGGTGATGATACGCCGACGCAGGTTGAACTCGGACTGGGTCGAATCGAAGTACGAATAGGTGCCCTGGGTATTGGCGTGCCACAGGTCGACGGTGGCACCGGCCAACGGCAAGCCGTTGGc                                                                                                                                 <  4:284904/149‑1 (MQ=255)                      gcgcgcgcGGTAGCGGCCCTCGGCATCGGTGATGATACGCCGACGCAGGTTGAACTCGGACTGGGTCGAATCGAAGTACGAATAGGTGCCCTGGGTATTGGCGTGCCACAGGTCGACGGTGGCACCGGCCAACGGCTTGCCGTCGGCAt                                                                                                                               >  3:134329/1‑149 (MQ=255)                                           ggCATCGGTGATGATACGCCGACGCAGGTTGAACTCGGACTGGGTCGAATCGAAGTACGAATAGGTGCCCTGGGTATTGGCGTGCCACAGGTCGACGGTGGCACCGGCCAACGGCTTGCCGTCGGCATCGAACACCTGGCCCTGAAgg                                                                                                           <  4:56560/148‑1 (MQ=255)                                               tCGGTGATGATACGCCGACGCAGGTTGAACTCGGACTGGGTCGAATCGAAGTACGAATAGGTGCCCTGGGTATTGGCGTGCCACAGGTCGACGGTGGCACCGGCCAACGGCTTGCCGTCGGCATCGAACACCTGGCCCTGAAGGAACAt                                                                                                      <  7:90912/149‑1 (MQ=255)                                                  gTGATGATACGCCGACGCAGGTTGAACTCGGACTGGGTCGAATCGAAGTACGAATAGGTGCCCTGGGTATTGGCGTGCCACAGGTCGACGGTGGCACCGGCCAACGGCTTGCCGTCGGCATCGAACACCTGGCCCTGAAGGAACATcac                                                                                                   <  2:145471/149‑1 (MQ=255)                                                        atACGCCGACGCAGGTTGAACTCGGACTGGGTCGAATCGAAGTACGAATAGGTGCCCTGGGTATTGGCGTGCCACAGGTCGACGGTGGCACCGGCCAACGGCTTGCCGTCGGCATCGAACACCTGGCCCTGAAGGAACATCACCACGc                                                                                              <  1:47904/148‑1 (MQ=255)                                                        atACGCCGACGCAGGTTGAACTCGGACTGGGTCGAATCGAAGTACGAATAGGTGCCCTGGGTATTGGCGTGCCACAGGTCGACGGTGGCACCGGCCAACGGCTTGCCGTCGGCATCGAACACCTGGCCCTGAAGGAACATCACCACGc                                                                                              <  6:87210/148‑1 (MQ=255)                                                         tACGCCGACGCAGGTTGAACTCGGACTGGGTCGAATCGAAGTACGAATAGGTGCCCTGGGTATTGGCGTGCCACAGGTCGACGGTGGCACCGGCCAACGGCTTGCCGTCGGCATCGAACACCTGGCCCTGAAGGAACATCACCACGCCt                                                                                            >  1:323254/1‑149 (MQ=255)                                                           cGCCGACGCAGGTTGAACTCGGACTGGGTCGAATCGAAGTACGAATAGGTGCCCTGGGTATTGGCGTGCCACAGGTCGACGGTGGCACCGGCCAACGGCTTGCCGTCGGCATCGAACACCTGGCCCTGAAGGAACATCACCACGCCTgg                                                                                          >  6:177024/1‑149 (MQ=255)                                                             ccGACGCAGGTTGAACTCGGACTGGGTCGAAGCGAAGTACGAATCGGTGCCCTGGGTCTTGGCGTGCCACAGGTCGACGGGGGCACCGGCCAACGGCTTGCCGTCGGCATCGAACACCTGGCCCTGAAGGAACATCACCACGCCTGGGt                                                                                        <  4:165241/149‑1 (MQ=255)                                                               gACGCAGGTTGAACTCGGACTGGGTCGAATCGAAGTACGAATAGGTGCCCTGGGTATTGGCGTGCCACAGGTCGACGGTGGCACCGGCCAACGGCTTGCCGTCGGCATCGAACACCTGGCCCTGAAGGAACATCACCACGCCTGGGTCa                                                                                      <  2:274688/149‑1 (MQ=255)                                                                 cGCAGGTTGAACTCGGACTGGGTCGAATCGAAGTACGAATAGGTGCCCTGGGTATTGGCGTGCCACAGGTCGACGGTGGCACCGGCCAACGGCTTGCCGTCGGCATCGAACACCTGGCCCTGAAGGAACATCACCACGCCTGGGTCAGt                                                                                    <  1:240171/149‑1 (MQ=255)                                                                  gCAGGTTGAACTCGGACTGGGTCGAATCGAAGTACGAATAGGTGCCCTGGGTATTGGCGTGCCACAGGTCGACGGTGGCACCGGCCAACGGCTTGCCGTCGGCATCGAACACCTGGCCCTGAAGGAACATCACCACGCCTGGGTCAGTg                                                                                   >  5:274612/1‑149 (MQ=255)                                                                    aGGTTGAACTCGGACTGGGTCGAATCGAAGTACGAATAGGTGCCCTGGGTATTGGCGTGCCACAGGTCGACGGTGGCACCGGCCAACGGCTTGCCGTCGGCATCGAACACCTGGcc                                                                                                                  <  8:290636/116‑1 (MQ=255)                                                                    aGGTTGAACTCGGACTGGGTCGAATCGAAGTACGAATAGGTGCCCTGGGTATTGGCGTGCCACAGGTCGACGGTGGCACCGGCCAACGGCTTGCCGTCGGCATCGAACACCTGGcc                                                                                                                  >  7:290636/1‑116 (MQ=255)                                                                    aGGTTGAACTCGGACTGGGTCGAATCGAAGTACGAATAGGTGCCCTGGGTATTGGCGTGCCACAGGTCGACGGTGGCACCGGCCAACGGCTTGCCGTCGGCATCGAACACCTGGCCCTGAAGGAACATCACCACGCCTGGGTCAGTGcc                                                                                 >  5:320210/1‑149 (MQ=255)                                                                        tGAACTCGGACTGGGTCGAATCGAAGTACGAATAGGTGCCCTGGGTATTGGCGTGCCACAGGTCGACGGTGGCACCGGCCAACGGCTTGCCGTCGGCATCGAACACCTGGCCCTGAAGGAACATCACCACGCCTGGGTCAGTGCcgtcg                                                                             >  6:287888/1‑149 (MQ=255)                                                                                     ggTCGAATCGAAGTACGAATAGGTGCCCTGGGTATTGGCGTGCCACAGGTCGACGGTGGCACCGGCCAACGGCTTGCCGTCGGCATCGAACACCTGGCCCTGAAGGAACATCACCACGCCTGGGTCAGTGCCGTCGTCCATGCGCGCtt                                                                >  4:16985/1‑149 (MQ=255)                                                                                     ggTCGAATCGAAGTACGAATAGGTGCCCTGGGTATTGGCGTGCCACAGGTCGACGGTGGCACCGGCCAACGGCTTGCCGTCGGCATCGAACACCTGGCCCTGAAGGAACATCACCACGCCTGGGTCAGTGCCGTCGTCCATGCGCGCtt                                                                <  3:16985/149‑1 (MQ=255)                                                                                       tcgaatcgaaGTACGAATAGGTGCCCTGGGTATTGGCGTGCCACAGGTCGACGGTGGCACCGGCCAACGGCTTGCCGTCGGCATCGAACACCTGGCCCTGAAGGAACATCACCACGCCTGGGTCAGTGCCGTCGTCCATGCGCGCTTCg                                                              >  5:268244/1‑149 (MQ=255)                                                                                         gaatcgaaGTACGAATAGGTGCCCTGGGTATTGGCGTGCCACAGGTCGACGGTGGCACCGGCCAACGGCTTGCCGTCGGCATCGAACACCTGGCCCTGAAGGAACATCACCACGCCTGGGTCAGTGCCGTCGTCCATGCGCGCTTCGcc                                                            >  7:252736/1‑149 (MQ=255)                                                                                              gaaGTACGAATAGGTGCCCTGGGTATTGGCGTGCCACAGGTCGACGGTGGCACCGGCCAACGGCTTGCCGTCGGCATCGAACACCTGGCCCTGAAGGAACATCACCACGCCTGGGTCAGTGCCGTCGTCCATGCGCGCTTCGCCCTggg                                                       >  3:218890/1‑149 (MQ=255)                                                                                                 gTACGAATAGGTGCCCTGGGTATTGGCGTGCCACAGGTCGACGGTGGCACCGGCCAACGGCTTGCCGTCGGCATCGAACACCTGGCCCTGAAGGAACATCACCACGCCTGGGTCAGTGCCGTCGTCCATGCGCGCTTCg                                                              >  8:255257/1‑139 (MQ=255)                                                                                                 gTACGAATAGGTGCCCTGGGTATTGGCGTGCCACAGGTCGACGGTGGCACCGGCCAACGGCTTGCCGTCGGCATCGAACACCTGGCCCTGAAGGAACATCACCACGCCTGGGTCAGTGCCGTCGTCCATGCGCGCTTCg                                                              <  7:255257/139‑1 (MQ=255)                                                                                                 gTACGAATAGGTGCCCTGGGTATTGGCGTGCCACAGGTCGACGGTGGCACCGGCCAACGGCTTGCCGTCGGCATCGAACACCTGGCCCTGAAGGAACATCACCACGCCTGGGTCAGTGCCGTCGTCCATGCGCGCTTCGCCCTGGGc                                                      >  2:285393/1‑147 (MQ=255)                                                                                                           gTGCCCTGGGTATTGGCGTGCCACAGGTCGACGGTGGCACCGGCCAACGGCTTGCCGTCGGCATCGAACACCTGGCCCTGAAGGAACATCACCACGCCTGGGTCAGTGCCGTCGTCCATGCGCGCTTCGCCCTGGGCCAGCGGCGcccc                                          >  5:272391/1‑149 (MQ=255)                                                                                                           gTGCCCTGGGTATTGGCGTGCCACAGGTCGACGGTGGCACCGGCCAACGGCTTGCCGTCGGCATCGAACACCTGGCCCTGAAGGAACATCACCACGCCTGGGTCAGTGCCGTCGTCCATGCGCGCTTCGCCCTGGGCCAGCGGCGcccc                                          <  6:320210/149‑1 (MQ=255)                                                                                                                cTGGGTATTGGCGTGCCACAGGTCGACGGTGGCACCGGCCAACGGCTTGCCGTCGGCATCGAACACCTGGCCCTGAAGGAACATCACCACGCCTGGGTCAGTGCCGTCGTCCATGCGCGCTTCGCCCTGGGCCAGCGGCGCCCCGGCaa                                     >  5:233190/1‑149 (MQ=255)                                                                                                                cTGGGTATTGGCGTGCCACAGGTCGACGGTGGCACCGGCCAACGGCTTGCCGTCGGCATCGAACACCTGGCCCTGAAGGAACATCACCACGCCTGGGTCAGTGCCGTCGTCCATGCGCGCTTCGCCCTGGGCCAGCGGCGCCCCGGCaa                                     >  3:158343/1‑149 (MQ=255)                                                                                                                 tGGGTATTGGCGTGCCACAGGTCGACGGTGGCACCGgccaatacccagggcacctattcgtacttcgattcgacccagtccgagttcaacctgcgtcggcgtatcatcac                                                                           >  3:187656‑M2/1‑36 (MQ=255)                                                                                                                 tGGGTATTGGCGTGCCACAGGTCGACGGTGGCACCGgccaatacccagggcacctattcgtacttccattcgacccagtccgagttcaacctgcgtcggcgtatcatcac                                                                           <  4:187656‑M2/110‑75 (MQ=255)                                                                                                                  gggTATTGGCGTGCCACAGGTCGACGGTGGCACCGGCCAACGGCTTGCCGTCGGCATCGAACACCTGGCCCTGAAGGAACATCACCACGCCTGGGTCAGTGCCGTCGTCCATGCGCGCTTCGCCCTGGGCCAGCGGCGCCCCGGCAACg                                   >  2:322558/1‑149 (MQ=255)                                                                                                                   ggTATTGGCGTGCCACAGGTCGACGGTGGCACCGGCCAACGGCTTGCCGTCGGCATCGAACACCTGGACCTGAAGGAACATCACCACGCCTGGGTCAGTGCCGTCGTCCATGCGCGCTTCGCCCTGGGCCAGCGGCGCCCCGGCAACGt                                  <  6:274612/149‑1 (MQ=255)                                                                                                                    gTATTGGCGTGCCACAGGTCGACGGTGGCACCGgccaatacccagggcacctattcgtacttcgattcgacccagtccgagttcaacctgcgtcggcgtatcatcaccgatgccgagggccgctaccgcgcgcgctcgatcgtgccgtc                                 <  7:286869‑M2/149‑117 (MQ=255)                                                                                                                    gTATTGGCGTGCCACAGGTCGACGGTGGCACCGGCCAACGGCTTGCCGTCGGCATCGAACACCTGGCCCTGAAGGAACATCACCACGCCTGGGTCAGTGCCGTCGTCCATGCGCGCTTCGCCCTGGGCCAGCGGCGCCCCGGCAACGTa                                 <  5:287888/149‑1 (MQ=255)                                                                                                                          gCGTGCCACAGGTCGACGGTGGCACCGGCCAACGGCTTGCCGTCGGCATCGAACACCTGGCCCTGAAGGAACATCACCACGCCTGGGTCAGTGCCGTCGTCCATGCGCGCTTCGCCCTGGGCCAGCGGCGCCCCGGCAACGTACAACgg                           <  1:285393/149‑1 (MQ=255)                                                                                                                            gTGCCACAGGTCGACGGTGGCACCGGCCAACGGCTTGCCGTCGGCATCGAACACCTGGCCCTGAAGGAACATCACCACGCCTGGGTCAGTGCCGTCGTCCATGCGCGCTTCGCCCTGGGCCAGCGGCGCCCCGGCAACGTACAACGGGc                         >  4:285647/1‑149 (MQ=255)                                                                                                                            gTGCCACAGGTCGACGGTGGCAC‑ccaatacccagggcacctattcgtacttcgattcgacccagtccgagttcaacctgcgtcggcgtatcatcaccgatgccgagggccgctaccgcgcgcgctcgatcgtgccgtccgggtatggc                         <  2:189397‑M2/149‑126 (MQ=255)                                                                                                                              gCCACAGGTCGACGGTGGCACCGGCCAACGGCTTGCCGTCGGCATCGAACACCTGGCCCTGAAGGAACATCACCACGCCTGGGTCAGTGCCGTCGTCCATGCGCGCTTCGCCCTGGGCCAGCGGCGCCCCGGCAACGTACAACGGGCCt                       >  6:108265/1‑149 (MQ=255)                                                                                                                              gCCACAGGTCGACGGTGGCACCGGCCAACGGCTTGCCGTCGGCATCGAACACCTGGCCCTGAAGGAACATCACCACGCCTGGGTCAGTGCCGTCGTCCATGCGCGCTTCGCCCTGGGCCAGCGGCGCCCCGGCAACGTACAACGGGCCt                       >  5:273465/1‑149 (MQ=255)                                                                                                                              gCCACAGGTCGACGGTGGCACCGGCCAACGGCTTGCCGTCGGCATCGAACACCTGGCCCTGAAGGAACATCACCACGCCTGGGTCAGCGCCGTCGTCCATGCGCGCTTCGCCCTGGGCCAGCGGCGCCCCGGCa                                      <  6:50285/134‑1 (MQ=255)                                                                                                                              gCCACAGGTCGACGGTGGCACCGGCCAACGGCTTGCCGTCGGCATCGAACACCTGGCCCTGAAGGAACATCACCACGCCTGGGTCAGCGCCGTCGTCCATGCGCGCTTCGCCCTGGGCCAGCGGCGCCCCGGCa                                      >  5:50285/1‑134 (MQ=255)                                                                                                                               ccACAGGTCGACGGTGGCACCGGCCAACGGCTTGCCGTCGGCATCGAACACCTGGCCCTGAAGGAACATCACCACGCCTGGGTCAGTGCCGTCGTCCATGCGCGCTTCGCCCTGGGCCAGCGGCGCCCCGGCAACGTACAACGGGCCtt                      <  6:268244/149‑1 (MQ=255)                                                                                                                                  caGGTCGACGGTGGCACCGGCCAACGGCTTGCCGTCGGCATCGAACACCTGGCCCTGAAGGAACATCACCACGCCTGGGTCAGTGCCGTCGTCCATGCGCGCTTCGCCCTGGGCCAGCGGCGCCCCGGCAACGTACAACGGGCCTTCGa                   <  8:252736/149‑1 (MQ=255)                                                                                                                                          cGGTGGCACCGGCCAACGGCTTGCCGTCGGCATCGAACACCTGGCCCTGAAGGAACATCACCACGCCTGGGt                                                                                        <  8:243701/72‑1 (MQ=255)                                                                                                                                               gCACCGGCCAACGGCTTGCCGTCGGCATCGAACACCTGGCCCTGAAGGAACATCACCACGCCTGGGTCAGTGCCGTCGTCCATGCGCGCTTCGCCCTGGGCCAGCGGCGCCCCGGCAACGTACAACGGGCCTTCGATGGTGCGCGGGGt      <  4:218890/149‑1 (MQ=255)                                                                                                                                                 aCCGGCCAACGGCTTGCCGTCGGCATCGAACACCTGGCCCTGAAGGAACATCACCACGCCTGGGTCAGTGCCGTCGTCCATGCGCGCTTCGCCCTGGGCCAgcg                                                 <  2:90350/104‑1 (MQ=255)                                                                                                                                                   cGGCCAACGGCTTGCCGTCGGCATCGAACACCTGGCCCTGAAGGAACATCACCACGCCTGGGTCAGTGCCGTCGTCCATGCGCGCTTCGCCCTGGGCCAGCGGCGCCCCGGCAACGTACAACGGGCCTTCGATGGTGCGCGGGGTgccg  >  3:227690/1‑149 (MQ=255)                                                                                                                                                    |                                                                                                                                                    ATACCCGGACGGCACGATCGAGCGCGCGCGGTAGCGGCCCTCGGCATCGGTGATGATACGCCGACGCAGGTTGAACTCGGACTGGGTCGAATCGAAGTACGAATAGGTGCCCTGGGTATTGGCGTGCCACAGGTCGACGGTGGCACCGGCCAACGGCTTGCCGTCGGCATCGAACACCTGGCCCTGAAGGAACATCACCACGCCTGGGTCAGTGCCGTCGTCCATGCGCGCTTCGCCCTGGGCCAGCGGCGCCCCGGCAACGTACAACGGGCCTTCGATGGTGCGCGGGGTGCCG  >  NC_002947/4236182‑4236476

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.