New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | = 4433959 | 46 (0.880) | 3 (0.060) | 3/248 | NT | 6.2% | intergenic (+107/‑56) | PP_3928/PP_3929 | hypothetical protein/hypothetical protein |
? | NC_002947 | = 4433985 | 48 (0.990) | intergenic (+133/‑30) | PP_3928/PP_3929 | hypothetical protein/hypothetical protein |
TCAACCAGCATCCTGATTCGACACGCCCCGGCCAAGGCGACCCATTGCACAGCACTTCGCCGCCGGCCAAGCATGGCCAGAACGTGTTGATACGCTTGGAACGATCAATGCCGGTCAGCGCCACAGCCCGTTCTTTCAGACGGACGC‑CTTGGCGCTGATCACTTGAAGCATAATTTTTTTGCCCGCCCGGGAAACCAAATCGATCGGTCCCAGTCTTAAAAGGTGCCCCGTAAACCTATGCGGATCAAGGACCTATATCGTGCTCACGCGTCTTGCAAGCCTTTC > NC_002947/4433837‑4434121 | tCAACCAGCATCCTGATTCGACACGCCCCGGCCAAGGCGACCCATTGCACAGCACTTCGCCGCCGGCCAAGCATGGCCAGAACGTGTTGATACGCTTGGAACGATCAATGCCGGTCAGCGCCACAGCCCGTTCTTTCAGACGGACGC‑Ct > 8:236159/1‑149 (MQ=255) aaCCAGCATCCTGATTCGACACGCCCCGGCCAAGGCGACCCATTGCACAGCACTTCGCCGCCGGCCAAGCATGGCCAGAACGTGTTGATACGCTTGGAACGATCAATGCCGGTCAGCGCCACAGCCCGTTCTTTCAGACGGACGC‑CTtg < 1:243103‑M2/149‑3 (MQ=255) aaCCAGCATCCTGATTCGACACGCCCCGGCCAAGGCGACCCATTGCACAGCACTTCGCCGCCGGCCAAGCATGGCCAGAACGTGTTGATACGCTTGGAACGATCAATGCCGGTCAGCGCCACAGCCCGTTCTTTCAGACGGACGC‑CTtg < 5:102286‑M2/149‑3 (MQ=255) aCCAGCATCCTGATTCGACACGCCCCGGCCAAGGCGACCCATTGCACAGCACTTCGCCGCCGGCCAAGCATGGCCAGAACGTGTTGATACGCTTGGAACGATCAATGCCGGTCAGCGCCACAGCCCGTTCTTTCAGACGGACGC‑CTtgg > 4:144316‑M2/1‑146 (MQ=255) aCCAGCATCCTGATTCGACACGCCCCGGCCAAGGCGACCCATTGCACAGCACTTCGCCGCCGGCCAAGCATGGCCAGAACGTGTTGATACGCTTGGAACGATCAATGCCGGTCAGCGCCACAGCCCGTTCTTTCAGACGGACGC‑CTtgg < 5:156206‑M2/149‑4 (MQ=255) gCATCCTGATTCGACACGCCCCGGCCAAGGCGACCCATTGCACAGCACTTCGCCGCCGGCCAAGCATGGCCAGAACGTGTTGATACGCTTGGAACGATCAATGCCGGTCAGCGCCACAGCCCGTTCTTTCAGACGGACGC‑CTtggcgct > 7:51047‑M2/1‑142 (MQ=255) tCCTGATTCGACACGCCCCGGCCAAGGCGACCCATTGCACAGCACTTCGCCGCCGGCCAAGCATGGCCAGAACGTGTTGATACGCTTGGAACGATCAATGCCGGTCAGCGCCACAGCCCGTTCTTTCAGACGGACGC‑CTTGGCGCTGAt < 4:104922/149‑1 (MQ=255) gATTCGACACGCCCCGGCCAAGGCGACCCATTGCACAGCACTTCGCCGCCGGCCAAGCATGGCCAGAACGTGTTGATACGCTTGGAACGATCAATGCCGGTCAGCGCCACAGCCCGTTCTTTCAGACGGACGC‑CTTGGCGCTGATCACt > 1:293926/1‑149 (MQ=255) acGCCCCGGCCAAGGCGACCCATTGCACAGCACTTCGCCGCCGGCCAAGCATGGCCAGAACGTGTTGATACGCTTGGAACGATCAATGCCGGTCAGCGCCACAGCCCGTTCTTTCAGACGGACGC‑CTTGGCGCTGATCACTTGAAGCa > 6:12921/1‑148 (MQ=255) cccGGCCAAGGCGACCCATTGCACAGCACTTCGCCGCCGGCCAAGCATGGCCAGAACGTGTTGATACGCTTGGAACGATCAATGCCGGTCAGCGCCACAGCCCGTTCTTTCAGACGGACGC‑CTTGGCGCTGATCACTTGAAGCATAAtt > 1:29907/1‑149 (MQ=255) cAAGGCGACCCATTGCACAGCACTTCGCCGCCGGCCAAGCATGGCCAGAACGTGTTGATACGCTTGGAACGATCAATGCCGGTCAGCGCCACAGCCCGTTCTTTCAGACGGACGC‑CTTGGCGCTGATCACTTGAAGCATAATTTTTTTg < 2:293926/149‑1 (MQ=255) aaGGCGACCCATTGCACAGCACTTCGCCGCCGGCCAAGCATGGCCAGAACGTGTTGATACGCTTGGAACGATCAATGCCGGTCAGCGCCACAGCCCGTTCTTTCAGACGGACGC‑CTTGGCGCTGATCACTTGAAGCATAATTTTTTTgc > 8:209728/1‑149 (MQ=255) ggCGACCCATTGCACAGCACTTCGCCGCCGGCCAAGCATGGCCAGAACGTGTTGATACGCTTGGAACGATCAATGCCGGTCAGCGCCACAGCCCGTTCTTTCAGACGGACGC‑CTTGGCGCTGATCACTTGAAGCATAATTTTTTTgccc < 2:243103/149‑1 (MQ=255) cccATTGCACAGCACTTCGCCGCCGGCCAAGCATGGCCAGAACGTGTTGATACGCTTGGAACGATCAATGCCGGTCAGCGCCACAGCCCGTTCTTTCAGACGGACGC‑CTTGGCGCTGATCACTTGAAGCATAATTTTTTTGcccgcccg < 5:12921/149‑1 (MQ=255) ccATTGCACAGCACTTCGCCGCCGGCCAAGCATGGCCAGAACGTGTTGATACGCTTGGAACGATCAATGCCGGTCAGCGCCACAGCCCGTTCTTTCAGACGGACGC‑CTTGGCGCTGATCACTTGAAGCATAATTTTTTTGCCCGCCCgg > 8:141084/1‑149 (MQ=255) cATTGCACAGCACTTCGCCGCCGGCCAAGCATGGCCAGAACGTGTTGATACGCTTGGAACGATCAATGTCGGTCAGCGCCACAGCCCGTTCTTTCAGACGGACGC‑CTTGGCGCTGATCACTTGAAGCATAATTTTTTTGCCCGCCCgg > 2:232317/1‑148 (MQ=255) gCACAGCACTTCGCCGCCGGCCAAGCATGGCCAGAACGTGTTGATACGCTTGGAACGATCAATGCCGGTCAGCGCCACAGCCCGTTCTTTCAGACGGACGC‑CTTGGCGCTGATCACTTGAAGCATAATTTTTTTGCCCGCCCGGGAAAc > 5:50261/1‑149 (MQ=255) acaGCACTTCGCCGCCGGCCAAGCATGGCCAGAACGTGTTGATACGCTTGGAACGATCAATGCCGGTCAGCGCCACAGCCCGTTCTTTCAGACGGACGC‑CTTGGCGCTGATCACTTGAAGCATAAttttt < 3:20586/130‑1 (MQ=255) acaGCACTTCGCCGCCGGCCAAGCATGGCCAGAACGTGTTGATACGCTTGGAACGATCAATGCCGGTCAGCGCCACAGCCCGTTCTTTCAGACGGACGC‑CTTGGCGCTGATCACTTGAAGCATAAttttt > 4:20586/1‑130 (MQ=255) acaGCACTTCGCCGCCGGCCAAGCATGGCCAGAACGTGTTGATACGCTTGGAACGATCAATGCCGGTCAGCGCCACAGCCCGTTCTTTCAGACGGACGC‑CTTGGCGCTGATCACTTGAAGCATAATTTTTTTGCCCGCCCGGGAAAcc > 6:120219/1‑148 (MQ=255) acaGCACTTCGCCGCCGGCCAAGCATGGCCAGAACGTGTTGATACGCTTGGAACGATCAATGCCGGTCAGCGCCACAGCCCGTTCTTTCAGACGGACGC‑CTTGGCGCTGATCACTTGAAGCATAATTTTTTTGCCCGCCCGGGAAAcc > 5:214871/1‑148 (MQ=255) acaGCACTTCGCCGCCGGCCAAGCATGGCCAGAACGTGTTGATACGCTTGGAACGATCAATGCCGGTCAGCGCCACAGCCCGTTCTTTCAGACGGACGC‑CTTGGCGCTGATCACTTGAAGCATAATTTTTTTGCCCGCCCGGGAAAcc > 2:168609/1‑148 (MQ=255) cTTCGCCGCCGGCCAAGCATGGCCAGAACGTGTTGATACGCTTGGAACGATCAATGCCGGTCAGCGCCACAGCCCGTTCTTTCAGACGGACGC‑CTtg > 7:264849‑M2/1‑95 (MQ=255) cTTCGCCGCCGGCCAAGCATGGCCAGAACGTGTTGATACGCTTGGAACGATCAATGCCGGTCAGCGCCACAGCCCGTTCTTTCAGACGGACGC‑CTtg < 8:264849‑M2/97‑3 (MQ=255) ttCGCCGCCGGCCAAGCATGGCCAGAACGTGTTGATACGCTTGGAACGATCAATGCCGGTCAGCGCCACAGCCCGTTCTTTCAGACGGACGC‑CTTGGCGCTGATCACTTGAAGCATAATTTTTTTGCCCGCCCGGGAAACCAAatcgat < 7:236159/149‑1 (MQ=255) cgccgcCGGCCAAGCATGGCCAGAACGTGTTGATACGCTTGGAACGATCAATGCCGGTCAGCGCCACAGCCCGTTCTTTCAGACGGACGC‑CTTGGCGCTGATCACTTGAAGCATAATTTTTTTGCCCGCCCGGGAAACCAAatcgatc < 6:50261/148‑1 (MQ=255) gccgGCCAAGCATGGCCAGAACGTGTTGATACGCTTGGAACGATCAATGTCGGTCAGCGCCACAGCCCGTTCTTTCAGACGGACGC‑CTTGGCGCTGATCACTTGAAGCATAATTTTTTTGCCCGCCCGGGAAACCAAATCGATCGGTcc < 1:232317/149‑1 (MQ=255) gccgGCCAAGCATGGCCAGAACGTGTTGATACGCTTGGAACGATCAATGCCGGTCAGCGCCACAGCCCGTTCTTTCAGACGGACGC‑CTTGGCGCTGATCACTTGAAGCATAATTTTTTTGCCCGCCCGGGAAACCAAATCGATCGGTcc < 7:28324/149‑1 (MQ=255) ccAAGCATGGCCAGAACGTGTTGATACGCTTGGAACGATCAATGCCGGTCAGCGCCACAGCCCGTTCTTTCAGACGGACGC‑CTTGGCGCTGATCACTTGAAGCATAATTTTTTTGCCCGCCCGGGAAACCAAATCGATCGGTCCCAggc < 7:209728/149‑3 (MQ=255) gCATGGCCAGAACGTGTTGATACGCTTGGAACGATCAATGCCGGTCAGCGCCACAGCCCGTTCTTTCAGACGGACGC‑CTTGGCGCTGATCACTTGaa > 3:245198/1‑97 (MQ=255) gCATGGCCAGAACGTGTTGATACGCTTGGAACGATCAATGCCGGTCAGCGCCACAGCCCGTTCTTTCAGACGGACGC‑CTTGGCGCTGATCACTTGaa < 4:245198/97‑1 (MQ=255) aTGGCCAGAACGTGTTGATACGCTTGGAACGATCAATGCCGGTCAGCGCCACAGCCCGTTCTTTCAGACGGACGC‑CTTGGCGCTGATCACTTGAAGCATAATTTTTTTGCCCGCCCGGGAAACCAAATCGATCGGTCCCAGTCTTaa > 3:217674/1‑147 (MQ=255) tgtTGATACGCTTGGAACGATCAATGCCGGTCAGCGCCACAGCCCGTTCTTTCAGACGGACGC‑CTTGGCGCTGATCACTTGAAGCATAATTTTTTTGCCCGCCCGGGAAACCAAATCGATCGGTCCCAGTCTTAAAAGGTGCCCCGTaa < 1:168609/149‑1 (MQ=255) aTACGCTTGGAACGATCAATGCCGGTCAGCGCCACAGCCCGTTCTTTCAGACGGACGC‑CTTGGCGCTGATCACTTGAAGCATAATTTTTTTGCCCGCCCGGGAAACCAAATCGATCGGTCCCAGTCTTAAAAGGTGCCCCGTAAACCTa > 6:17757/1‑149 (MQ=255) cGCTTGGAACGATCAATGCCGGTCAGCGCCACAGCCCGTTCTTTCAGACGGACGC‑CTTGGCGCTGATCACTTGAAGCATAATTTTTTTGCCCGCCCGGGAAACCAAATCGATCGGTCCCAGTCTTAAAAGGTGCCCCGTAAACCTATGc < 5:249481/149‑1 (MQ=255) gCTTGGAACGATCAATGCCGGTCAGCGCCACAGCCCGTTCTTTCAGACGGACGC‑CTTGGCGCTGATCACTTGAAGCATAATTTTTTTGCCCGCCCGGGAAACCAAATCGATCGGTCCCAGTCTTAAAAGGTGCCCCGTAAACCTATGCg < 8:100492/149‑1 (MQ=255) gAACGATCAATGCCGGTCAGCGCCACAGCCCGTTCTTTCAGACGGACGC‑CTTGGCGCTGATCACTTGAAGCATAATTTTTTTGCCCGCCCGGGAAACCAAATCGATCGGTCCCAGTCTTAAAAGGTGCCCCGTAAACCTATGCGGATc < 6:156206/148‑1 (MQ=255) aCGATCAATGCCGGTCAGCGCCACAGCCCGTTCTTTCAGACCGACGC‑CTTGGCGCTGATCACTTGAAGCATAATTTTTTTGCCCGCCCGGGAAACCAAATCGATCGGTCCCAGTCTTAAAAGGTGCCCCGTAAACCTATGCGGATCAAg < 6:214871/149‑1 (MQ=255) gATCAATGCCGGTCAGCGCCACAGCCCGTTCTTTCAGACGGACGC‑CTTGGCGCTGATCACTTGAAGCATAATTTTTTTGCCCGCCCGGGAAACCAAATCGATCGGTCCCAGTCTTAAAAGGTGCCCCGTAAACCTATGCGGATCAAGGa > 6:144352/1‑149 (MQ=255) tCAATGCCGGTCAGCGCCACAGCCCGTTCTTTCAGACGGACGCTCTTGGCGCTGATCACTTGAAGCATAATTTTTTTGCCCGCCCGGGAAACCAAATCGATCGGTCCCAGTCTTAAAAGGTGCCCCGTAAACCTATGCGGATCAAg > 1:227086/1‑146 (MQ=255) tCAATGCCGGTCAGCGCCACAGCCCGTTCTTTCAGACGGACGC‑CTTGGCGCTGATCACTTGAAGCATAATTTTTTTGCCCGCCCGGGAAACCAAATCGATCGGTCCCAGTCTTAAAAGGTGCCCCGTAAACCTATGCGGATCAAg < 2:227086/145‑1 (MQ=255) aaTGCCGGTCAGCGCCACAGCCCGTTCTTTCAGACGGACGC‑CTTGGCGCTGATCACTTGAAGCATAATTTTTTTGCCCGCCCGGGAAACCAAATCGATCGGTCCCAGTCTTAAAAGGTGCCCCGTAAAc < 1:287311/129‑1 (MQ=255) aaTGCCGGTCAGCGCCACAGCCCGTTCTTTCAGACGGACGC‑CTTGGCGCTGATCACTTGAAGCATAATTTTTTTGCCCGCCCGGGAAACCAAATCGATCGGTCCCAGTCTTAAAAGGTGCCCCGTAAAc > 2:287311/1‑129 (MQ=255) aTGCCGGTCAGCGCCACAGCCCGTTCTTTCAGACGGACGC‑CTTGGCGCTGATCACTTGAAGCATAATTTTTTTGCCCGCCCGGGAAACCAAATCGATCGGTCCCAGTCTTAAAAGGTGCCCCGTAAACCTATGCGGATCAAGGACCtat < 6:102286/149‑1 (MQ=255) tGCCGGTCAGCGCCACAGCCCGTTCTTTCAGACGGACGC‑CTTGGCGCTGATCACTTGAAGCATAATTTTTTTGCCCGCCCGGGAAACCAAATCGATCGGTCCCAGTCTTAAAAGGTGCCCCGTAAACCTATGCGGATCAAGGACCtat > 5:178856/1‑148 (MQ=255) tGCCGGTCAGCGCCACAGCCCGTTCTTTCAGACGGACGC‑CTTGGCGCTGATCACTTGAAGCATAATTTTTTTGCCCGCCCGGGAAACCAAATCGATCGGTCCCAGTCTTAAAAGGTGCCCCGTAAACCTATGCGGATCAAGGACCtat < 6:178856/148‑1 (MQ=255) cGGTCAGCGCCACAGCCCGTACTTTCAGACGGACGC‑CTTGGCGCTGATCACTTGAAGCATAATTTTTTTGCCCGCAAGGGAAACCAAATCGATCCGTCCCAGTCTTAAAAGGTGCCCCGTAAAACTATGCGCATCAACTACCTATATCg > 6:324385/1‑149 (MQ=255) gTCAGCGCCACAGCCCGTTCTTTCAGACGGACGC‑CTTGGCGCTGATCACTTGAAGCATAATTTTTTTGCCCGCCCGGGAAACCAAATCGATCGGTCCCAGTCTTAAAAGGTGCCCCGTAAACCTATGCGGATCAAGGACCTATATCGTg < 5:144352/149‑1 (MQ=255) gTCAGAGACACAGCCCGTTCTTTCAGACTTACTC‑CTTTGAGATTATAACTTTAAGCATAATTTTTTTGCCCGGCTGGGACTCCAAATCTATCGGTCCCAGTCTTAAAAGGTGCCCCGTAAACCTATGATGATCAAGGACCTATATCGtt < 1:265556/149‑2 (MQ=255) tCAGCGCCACAGCCCGTTCTTTCAGACGGACGC‑CTtggcgctgaccggcattgatcgttccaagcgtatcaacacgttctggccatgcttggccggcggcgaagtgctgtgcaatgggtcgccttggccggggcgtgtcgaatcagga < 7:244343‑M2/148‑114 (MQ=255) tCAGCGCCACAGCCCGTTCTTTCAGACGGACGC‑CTtggcgctgaccggcattgatcgttccaagcgtatcaacacgttctggccatgcttggccggcggcgaagtgctgtgcaatgggtcgccttggccggggcgtgtcgaatcagga > 8:244343‑M2/1‑35 (MQ=255) gcgcCACAGCCCGTTCTTTCAGACGGACGC‑CTtggcgctgaccggcattgatcgttccaagcgtatcaacacgttctggccatgcttggccggcggcgaagtgctgtgcaatgggtcgccttggccggggcgtgtcgaatcaggatgct < 3:61149‑M2/149‑118 (MQ=255) ccACAGCCCGTTCTTTCAGACGGACGC‑CTTGGCGCTGATCACTTGAAGCATAATTTTTTTGCCCGCCCGGGAAACCAAATCGATCGGTCCCAGTCTTAAAAGGTGCCCCGTAAACCTATGCGGATCAAGGACCTATATCGTGCTCAcgc < 5:17757/149‑1 (MQ=255) cacaGCCCGTTCTTTCAGACGGACGC‑CTTGGCGCTGATCACTTGAAGCATAATTTTTTTGCCCGCCCGGGAAACCAAATCGATCGGTCCCAGTCTTAAAAGGTGCCCCGTAAACCTATGCGCATCAAGGACCTATATCGTGCTCAcgcg > 3:141918/1‑149 (MQ=255) acaGCCCGTTCTTTCAGACGGACGC‑CTTGGCGCTGATCACTTGAAGCATAATTTTTTTGCCCGCCCGGGAAACCAAATCGATCGGTCCCAGTCTTAAAAGGTGCCCCGTAAACCTATGCGGATCAAGGACCTATATCGTGCTCACGCGt > 6:132388/1‑149 (MQ=255) gCCCGTTCTTTCAGACGGACGC‑CTTGGCGCTGATCACTTGAAGCATAATTTTTTTGCCCGCCCGGGAAACCAAATCGATCGGTCCCAGTCTTAAAAGGTGCCCCGTAAACCTATGCGGATCAAGGACCTATATCGTGCTCACGCGTCtt < 7:141084/149‑1 (MQ=255) gcGTTGTTTCAGACGGACGC‑GTTGGCGCTGATCAGTTGAAGCTTAATTTTTTTGCGGGCCCTGGAAAGCTAATCGATCGGTGCCAGTCTTTATAGGTTCCGCGTAAACCTTTGGGGTTCAAGGTGCTATATCGTGCTCACGCGTCTTGc < 4:141918/148‑1 (MQ=255) cAGACGGACGC‑CTTGGCGCTGATCACTTGAAGCATAATTTTTTTGCCCGCCCGGGAAACCAAATCGATCGGTCCCAGTCTTAAAAGGTGCCCCGTAAACCTATGCGGATCAAGGACCTATATCGTGCTCACGCGTCTTGCAAGCCttt < 5:132388/148‑1 (MQ=255) aGACTGACGC‑CTTGGCGCTGATGACTTGAAGCATAATTTTTTTTCCCGCACGTGAAACAAAATCTATCGGTCCCAGTCTTAAAAGGTGCCCCGTAAACCTATGCGGATCATGGACCTATATCGTGCTGACGCGTATTGCAAGCCTTtc < 5:324385/148‑1 (MQ=255) acggacgC‑CTTGGCGCTGATCACTTGAAGCATAATTTTTTTGCCCGCCCGGGAAACCAAATCGATCGGTCCCAGTCTTAAAAGGTGCCCCGTAAACCTATGCGGATCAAGGACCTATATCGTGCTCACGCGTCt > 4:265472/1‑134 (MQ=255) acggacgC‑CTTGGCGCTGATCACTTGAAGCATAATTTTTTTGCCCGCCCGGGAAACCAAATCGATCGGTCCCAGTCTTAAAAGGTGCCCCGTAAACCTATGCGGATCAAGGACCTATATCGTGCTCACGCGTCt < 3:265472/134‑1 (MQ=255) | TCAACCAGCATCCTGATTCGACACGCCCCGGCCAAGGCGACCCATTGCACAGCACTTCGCCGCCGGCCAAGCATGGCCAGAACGTGTTGATACGCTTGGAACGATCAATGCCGGTCAGCGCCACAGCCCGTTCTTTCAGACGGACGC‑CTTGGCGCTGATCACTTGAAGCATAATTTTTTTGCCCGCCCGGGAAACCAAATCGATCGGTCCCAGTCTTAAAAGGTGCCCCGTAAACCTATGCGGATCAAGGACCTATATCGTGCTCACGCGTCTTGCAAGCCTTTC > NC_002947/4433837‑4434121 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |