New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5388759	46 (0.880)	3 (0.060)	3/256	NT	6.4%	coding (2269/2811 nt)	dld2	D‑lactate dehydrogenase
	?	NC_002947	= 5388784	43 (0.860)					coding (2294/2811 nt)	dld2	D‑lactate dehydrogenase

CCGGCCTATGCCGACCGCGAGCAAAGCTCGCTGCTGGACAAAACCCGCGCCCTGCTGGAAAAGGCCGGTTACCAGGTGGTGTTCCCCGACAACGCCGACAGCCTGT‑GCTGCGGCCAACCGTTCGCCTCCAAGGGCTACCCCGAGCAGGCCGAACACAAACGCCAGGAGCTGATCACCGCCCTGCTGCACGCCAGCCGCGGCGGCCTCGACCCGATCTATTGCGACACAAGCCCCTGCACCCTGCGCCTGGTGCAGGACCTGAGCGACACCCGGCTGGACCTGTACGACCCCGT  >  NC_002947/5388636‑5388928                                                                                                                                                      |                                                                                                                                                 cgcgaagaTGCCGTCCGCGAGCACAGCGCGCTGCTGGACAAACCCCGCGCCCTGCTGGAAAAGGCCGGTTACCAGGTGGTGTTCCCCGACAACGCCGACAGCCTGT‑GCTGCGGCCAACCGTTCGCCTCCAAGGGCTACCCCGAGCAGGc                                                                                                                                                  <  6:261323/142‑1 (MQ=255)   ggCCTATGCCGACCGCGAGCAAAGCTCGCTGCTGGACAAAACCCGCGCCCTGCTGGAAAAGGCCGGTTACCAGGTGGTGTTCCCCGACAACGCCGACAGCCTGT‑GCTGCGGCCAACCGTTCGCCTCCAAGGGCTACCCCGAGCAGGCcg                                                                                                                                                >  5:69520‑M2/1‑147 (MQ=255)    gCCTATGCCGACCGCGAGCAAAGCTCGCTGCTGGACAAAACCCGCGCCCTGCTGGAAAAGGCCGGTTACCAGGTGGTGTTCCCCGACAACGCCGACAGCCTGT‑GCTGCGGCCAACCGTTCGCCTCCAAGGGCTACCCCGAGCAGGCcga                                                                                                                                               >  5:319969‑M2/1‑146 (MQ=255)      cTATGCCGACCGCGAGCAAAGCTCGCTGCTGGACAAAACCCGCGCCCTGCTGGAAAAGGCCGGTTACCAGGTGGTGTTCCCCGACAACGCCGACAGCCTGT‑GCTGCGGCCAACCGTTCGCCTCCAAGGGCTCCCCCGAGCAGGCcgaa                                                                                                                                              <  3:13981‑M2/148‑5 (MQ=255)        aTGCCGACCGCGAGCAAAGCTCGCTGCTGGACAAAACCCGCGCCCTGCTGGAAAAGGCCGGTTACCAGGTGGTGTTCCCCGACAACGCCGACAGCCTGT‑GCTGCGGCCAACCGTTCGCCTCCAAGGGCTACCCCGAGCAGGCCGAaca                                                                                                                                            >  1:324568/1‑148 (MQ=255)            cGACCGCGAGCAAAGCTCGCTGCTGGACAAAACCCGCGCCCTGCTGGAAAAGGCCGGTTACCAGGTGGTGTTCCCCGACAACGCCGACAGCCTGT‑GCTGCGGCCAACCGTTCGCCTCCAAGGGCTACCCCGAGCAGGCCGAACACAAAc                                                                                                                                       >  7:11346/1‑149 (MQ=255)              aCCGCGAGCAAAGCTCGCTGCTGGACAAAACCCGCGCCCTGCTGGAAAAGGCCGGTTACCAGGTGGTGTTCCCCGACAACGCCGACAGCCTGT‑GCTGCGGCCAACCGTTCGCCTCCAAGGGCTACCCCGAGCAGGCCGAACACAAACGc                                                                                                                                     <  2:252964/149‑1 (MQ=255)                cgcgAGCAAAGCTCGCTGCTGGACAAAACCCGCGCCCTGCTGGAAAAGGCCGGTTACCAGGTGGTGTTCCCCGACAACGCCGACAGCCTGT‑GCTGCGGCCAACCGTTCGCCTCCAAGGGCTACCCCGAGCAGGCCGAACACAAACGc                                                                                                                                     >  2:250515/1‑147 (MQ=255)                   gAGCAAAGCTCGCTGCTGGACAAAACCCGCGCCCTGCTGGAAAAGGCCGGTTACCAGGTGGTGTTCCCCGACAACGCCGACAGCCTGT‑GCTGCGGCCAACCGTTCGCCTCCAAGGGCTACCCCGAGCAGGCCGAACACAAACGCCAGGa                                                                                                                                >  8:227487/1‑149 (MQ=255)                      cAAAGCTCGCTGCTGGACAAAACCCGCGCCCTGCTGGAAAAGGCCGGTTACCAGGTGGTGTTCCCCGACAACGCCGACAGCCTGTCGCTGCGGCCAACCGTTCGCCTCCAAGGGCTACCCCGAGCAGGCCGAACACAAACGCCAGGAGc                                                                                                                              <  1:97876/149‑1 (MQ=255)                       aaaGCTCGCTGCTGGACAAAACCCGCGCCCTGCTGGAAAAGGCCGGTTACCAGGTGGTGTTCCCCGACAACGCCGACAGCCTGT‑GCTGCGGCCAACCGTTCGCCTCCAAGGGCTACCCCGAGCAGGCCGAACACAAACGCCAGGAGCt                                                                                                                             >  5:140480/1‑148 (MQ=255)                           cTCGCTGCTGGACAAAACCCGCGCCCTGCTGGAAAAGGCCGGTTACCAGGTGGTGTTCCCCGACAACGCCGACAGCCTGT‑GCTGCGGCCAACCGTTCGCCTCCAAGGGCTACCCCGAGCAGGCCGAACACAAACGCCAGGAGCTGATCa                                                                                                                        >  4:144890/1‑149 (MQ=255)                                     gACAAAACCCGCGCCCTGCTGGAAAAGGCCGGTTACCAGGTGGTGTTCCCCGACAACGCCGACAGCCTGT‑GCTGCGGCCAACCGTTCGCCTCCAAGGGCTACCCCGAGCAGGCCGAACACAAACGCCAGGAGCTGATCACCGCCctgct                                                                                                              <  4:115216/149‑1 (MQ=255)                                     gACAAAACCCGCGCCCTGCTGGAAAAGGCCGGTTACCAGGTGGTGTTCCCCGACAACGCCGACAGCCTGT‑GCTGCGGCCAACCGTTCGCCTCCAAGGGCTACCCCGAGCAGGCCGAACACAAACGCCAGGAGCTGATCACCGCCctgct                                                                                                              >  7:168541/1‑149 (MQ=255)                                        aaaaCCCGCGCCCTGTTGGAAAAGGCCGGTTACCAGGTGGTGTTCCCCGACAACGCCGACAGCCTGT‑GCTGCGGCCAACCGTTCGCCTCCAAGGGCTACCCCGAGCAGGCCGAACACAAACGCCAGGAGCTGATCACCGCCCTGCTGCa                                                                                                           <  4:89490/149‑1 (MQ=255)                                                  cccTGCTGGAAAAGGCCGGTTACCAGGTGGTGTTCCCCGACAACGCCGACAGCCTGT‑GCTGCGGCCAACCGTTCGCCTCCAAGGGCTACCCCGAGCAGGCCGAACACAAACGCCAGGAGCTGATCACCGCCCTGCTGCACGCCAGCcgc                                                                                                 <  8:11346/149‑1 (MQ=255)                                                     tgctgGAAAAGGCCGGTTACCAGGTGGTGTTCCCCGACAACGCCGACAGCCTGT‑GCTGCGGCCAACCGTTCGCCTCCAAGGGCTACCCCGAGCAGGCCGAACACAAACGCCAGGAGCTGATCACCGCCCTGCTGCACGCCAGCCgcggc                                                                                              >  8:79648/1‑149 (MQ=255)                                                       ctgGAAAAGGCCGGTTACCAGGTGGTGTTCCCCGACAACGCCGACAGCCTGT‑GCTGCGGCCAACCGTTCGCCTCCAAGGGCTACCCCGAGCAGGCCGAACACAAACGCCAGGAGCTGATCACCGCCCTGCTGCACGCCAGCCGcggcgg                                                                                            <  3:270039/149‑1 (MQ=255)                                                                  cGGTTACCAGGTGGTGTTCCCCGACAACGCCGACAGCCTGT‑GCTGCGGCCAACCGTTCGCCTCCAAGGGCTACCCCGAGCAGGCCGAACACAAACGCCAGGAGCTGATCACCGCCctg                                                                                                                >  3:301996/1‑118 (MQ=255)                                                                  cGGTTACCAGGTGGTGTTCCCCGACAACGCCGACAGCCTGT‑GCTGCGGCCAACCGTTCGCCTCCAAGGGCTACCCCGAGCAGGCCGAACACAAACGCCAGGAGCTGATCACCGCCctg                                                                                                                <  4:301996/118‑1 (MQ=255)                                                                    gTTACCAGGTGGTGTTCCCCGACAACGCCGACAGCCTGT‑GCTGCGGCCAACCGTTCGCCTCCAAGGGCTACCCCGAGCAGGCCGAACACAAACGCCAGGAGCTGATCACCGCCCtgctgc                                                                                                            >  5:12797/1‑120 (MQ=255)                                                                    gTTACCAGGTGGTGTTCCCCGACAACGCCGACAGCCTGT‑GCTGCGGCCAACCGTTCGCCTCCAAGGGCTACCCCGAGCAGGCCGAACACAAACGCCAGGAGCTGATCACCGCCCtgctgc                                                                                                            <  6:12797/120‑1 (MQ=255)                                                                          aGGTGGTGTTCCCCGACAACGCCGACAGCCTGT‑GCTGCGGCCAACCGTTCGCCTCCAAGGGCTACCCCGAGCAGGCCGAACACAAACGCCAGGAGCTGATCACCGCCCTGCTGCACGCCAGCCGCGGCGGCCTCGACCCGATCTATTGc                                                                         <  6:106578/149‑1 (MQ=255)                                                                               gtgtTCCCCGACAACGCCGACAGCCTGT‑GCTGCGGCCAACCGTTCGCCTCCAAGGGCTACCCCGAGCAGGCCGAACACAAACGCCAGGAGc                                                                                                                              <  3:303828/91‑1 (MQ=255)                                                                                      ccGACAACGCCGACAGCCTGT‑GCTGCGGCCAACCGTTCGCCTCCAAGGGCTACCCCGAGCAGGCCGAACACAAACGCCAGGAGCTGATCACCGCCCTGCTGCACGCCAGCCGCGGCGGCCTCGACCCGATCTATTGCGACACAAGcccc                                                             >  3:92959/1‑149 (MQ=255)                                                                                       cGACAACGCCGACAGCCTGT‑GCTGCGGCCAACCGTTCGCCTCCAAGGGCTACCCCGAGCAGGCCGAACACAAACGCCAGGAGCTGATCACCGCCCTGCTGCACGCCAGCCGCGGCGGCCTCGACCCGATCTATTGCGACACAAGCCCCt                                                            <  3:144890/149‑1 (MQ=255)                                                                                           aaCGCCGACAGCCTGT‑GCTGCGGCCAACCGTTCGCCTCCAAGGGCTACCCCGAGCAGGCCGAACACAAACGCCAGGAGCTGATCACCGCCCTGCTGCACGCCAGCCGCGGCGGCCTCGACCCGATCTATTGCGACACAAGCCCCTGCAc                                                        >  2:323783/1‑149 (MQ=255)                                                                                             cGCCGACAGCCTGT‑GCTGCTGCCAACCGTTCGCCTCCAAGGGCTACCCCGAGCAGGCCGAACACAAACGCCAGGAGCTGATCACCGCCCTGCTGCTCGCCAGCCGCGGCGGCCTCGACCCGATCTATTGCGACACAAGCCCCTGCAccc                                                      <  7:227487/149‑1 (MQ=255)                                                                                                  aCAGCCTGT‑GCTGCGGCCAACCGTTCGCCTCCAAGGGCTACCCCGAGCAGGCCGAACACAAACGCCAGGAGCTGATCACCGCCCTGCTGCACGCCAGCCGCGGCGGCCTCGACCCGATCTATTGCGACACAAGCCCCTGCACCCTgcgc                                                 <  3:110256/149‑1 (MQ=255)                                                                                                      ccTGT‑GCTGCGGCCAACCGTTCGCCTCCAAGGGCTACCCCGAGCAGGCCGAACACAAACGCCAGGAGCTGATCACCGCCCTGCTGCACGCCAGCCGCGGCGGCCTCGACCCGATCTATTGCGACACAAGCCCCTGCACCCTGCGCCTgg                                             >  7:157594/1‑149 (MQ=255)                                                                                                        tgt‑gCTGCGGCCAACCGTTCGCCTCCAAGGGCTACCCCGAGCAGGCCGAACACAAACGCCAGGAGCTGATCACCGCCCTGCTGCACGCCAGCCGCGGCGGCCTCGACCCGATCTATTGCGACACAAGCCCCTGCACCCTGCGCCTGGTg                                           >  5:201624/1‑149 (MQ=255)                                                                                                          t‑gctgcGGCCAACCGTTCGCCTCCAAGGGCTACCCCGAGCAGGCCGAACACAAACGCCAGGAGCTGATCACCGCCCTGCTGCACGCCAGCCGCGGCGGCCTCGACCCGATCTATTGCGACACAAGCCCCTGCACCCTGCGCCTGGTg                                           <  6:201624/147‑1 (MQ=255)                                                                                                               gcGGCCAACCGTTCGCCTCCAAGGGCTACCCCGAGCAGGCCGAACACAAACGCCAGGAGCTGATCACCGCCCTGCTGCACGCCAGCCGCGGCGGCCTCGACCCGATCTATTGCGACACAAGCCCCTGCACCCTGCGCCTGGTGCAGGAc                                     >  6:309354/1‑149 (MQ=255)                                                                                                                cGGCCAACCGTTCGCCTCCAAGGGCTACCCCGAGCAGGCCGAACACAAACGCCAGGAGCTGATCACCGCCCTGCTGCACGCCAGCCGCGGCGGCCTCGACCCGATCTATTGCGACACAAGCCCCTGCACCAGGCGCAGGGTGCAggggc                                    <  6:140480/149‑4 (MQ=255)                                                                                                                cGGCCAACCGTTCGCCTCCAAGGGCTACCCCGAGCAGGCCGAACACAAACGCCAGGAGCTGATCACCGCCCTGCTGCACGCCAGCCGCGGCGGCCTCGACCCGATCTATTGCGACACAAGCCCCTGCACCAGGCGCAGGGTGCAggg                                      <  7:79648/147‑2 (MQ=255)                                                                                                                  gCCAACCGTTCGCCTCCAAGGGCTACCCCGAGCAGGCCGAACACAAACGCCAGGAGCTGATCACCGCCCTGCTGCACGCCAGCCGCGGCGGCCTCGACCCGATCTATTGCGACACAAGCCCCTGCACCCTGCGCCTGGTg                                           >  8:21115/1‑140 (MQ=255)                                                                                                                  gCCAACCGTTCGCCTCCAAGGGCTACCCCGAGCAGGCCGAACACAAACGCCAGGAGCTGATCACCGCCCTGCTGCACGCCAGCCGCGGCGGCCTCGACCCGATCTATTGCGACACAAGCCCCTGCACCCTGCGCCTGGTg                                           <  7:21115/140‑1 (MQ=255)                                                                                                                     aaCCGTTCGCCTCCAAGGGCTACCCCGAGCAGGCCGAACACAAACGCCAGGAGCTGATCACCGCCCTGCTGCACGCCAGCCGCGGCGGCCTCGACCCGATCTATTGCGACACAAGCCCCTGCACCCTGCGCCTGGTg                                           <  2:152958/137‑1 (MQ=255)                                                                                                                     aaCCGTTCGCCTCCAAGGGCTACCCCGAGCAGGCCGAACACAAACGCCAGGAGCTGATCACCGCCCTGCTGCACGCCAGCCGCGGCGGCCTCGACCCGATCTATTGCGACACAAGCCCCTGCACCCTGCGCCTGGTg                                           >  1:152958/1‑137 (MQ=255)                                                                                                                       ccGTTCGCCTCCAAGGGCTACCCCGAGCAGGCcgaacggttggccgcagcacaggctgtcggcgttgtcggggaacaccacctggtaaccggccttttccagcagggcgcgggttttgtccagcagcgagctttgctcgcggtcggca                              <  3:278646‑M2/148‑117 (MQ=255)                                                                                                                         gTTCGCCTCCGAGGGCTACCCCGAGCAGGCcgaacggttggccgcagcacaggctgtcggcgttgtcggggaacaccacctggtaaccggccttttccagcagggcgcgggttttgtccagcagcgagct                                              <  4:66440‑M2/130‑101 (MQ=255)                                                                                                                         gTTCGCCTCCGAGGGCTACCCCGAGCAGGCcgaacggttggccgcagcacaggctgtcggcgttgtcggggaacaccacctggtaaccggccttttccagcagggcgcgggttttgtccagcagcgagct                                              >  3:66440‑M2/1‑30 (MQ=255)                                                                                                                         gTTCGCCTCCAAGGGCTACCCCGAGCAGGCCGAACACAAACGCCAGGAGCTGATCACCGCCCTGCTGCACGCCAGCCGCGGCGGCCTCGACCCGATCTATTGCGACACAAGCCCCTGCACCCTGCGCCTGGTGCAGGACCTGCGCGaca                           >  6:34496/1‑149 (MQ=255)                                                                                                                          ttCGCCTCCAAGGGCTACCCCGAGCAGGCCGAACACAAACGCCAGGAGCTGATCACCGCCCTGCTGCACGCCAGCCGCGGCGGCCTCGACCCGATCTATTGCGACACAAGCCCCTGCACCCTGCGCCTGGTGCAGGACCTGAGCGacac                          <  4:92959/149‑1 (MQ=255)                                                                                                                             gCCTCCAAGGGCTACCCCGAGCAGGCCGAACACAAACGCCAGGAGCTGATCACCGCCCTGCTGCACGCCAGCCGCGGCGGCCTCGACCCGATCTATTGCGACACAAGCCCCTGCACCCTGCGCCTGGTGCAGGACCTGAGCGACACCCg                       >  5:37001/1‑149 (MQ=255)                                                                                                                             gCCTCCAAGGGCTACCCCGAGCAGGCCGAACACAAACACCAGGAGCTGATCACCGCCCTGCTGCACGCCAGCCGCGGCGGCCTCGACCCGATCTATTGCGACACAAGCCCCTGCACCCTGCGCCTGGTGCAGGACCTGAGCGACACCCg                       >  1:58925/1‑149 (MQ=255)                                                                                                                                      ggCTACCCCGAGCAGGCCGAACACAAACGCCAGGAGCTGATCACCGCCCTGCTGCACGCCAGCCGCGGCGGCCTCGACCCGATCTATTGCGACACAAGCCCCTGCACCCTGCGCCTGGTGCAGGACCTGAGCGACACCCGGCTGGACCt              >  1:154494/1‑149 (MQ=255)                                                                                                                                          aCCCCGAGCAGGCCGAACACAAACGCCAGGAGCTGATCACCGCCCTGCTGCACGCCAGCCGCGGCGGCCTCGACCCGATCTATTGCGACACAAGCCCCTGCACCCTGCGCCTGGTGCAGGACCTGAGCGACACCCGGCTGGACCt              >  7:50582/1‑145 (MQ=255)                                                                                                                                          aCCCCGAGCAGGCCGAACACAAACGCCAGGAGCTGATCACCGCCCTGCTGCACGCCAGCCGCGGCGGCCTCGACCCGATCTATTGCGACACAAGCCCCTGCACCCTGCGCCTGGTGCAGGACCTGAGCGACACCCGGCTGGACCt              <  8:50582/145‑1 (MQ=255)                                                                                                                                              cGAGCAGGCCGAACACAAACGCCAGGAGCTGATCACCGCCCTGCTGCACGCCAGCCGCGGCGGCCTCGACCCGATCTATTGCGACACAAGc                                                                <  6:20086/91‑1 (MQ=255)                                                                                                                                              cGAGCAGGCCGAACACAAACGCCAGGAGCTGATCACCGCCCTGCTGCACGCCAGCCGCGGCGGCCTCGACCCGATCTATTGCGACACAAGc                                                                >  5:20086/1‑91 (MQ=255)                                                                                                                                                  cAGGCCGAACACAAACGCCAGGAGCTGATCACCGCCCTGCTGCACGCCAGCCGCGGCGGCCTCGACCCGATCTATTGCGACACAAGCCCCTGCACCCTGCGCCTGGTGCAGGACCTGAGCGACACCCGGCTGGACCTGTACGACCCCGt  <  2:154494/149‑1 (MQ=255)                                                                                                                                                      ccGAACACAAACGCCAGGAGCTGATCACCGCCCTGCTGCACGCCAGCCGCGGCGGCCTCGACCCGATCTATTGCGACACAAGCCCCTGCACCCTGCGCCTGGTGCAGGACCTGAGc                               <  7:161963/116‑1 (MQ=255)                                                                                                                                                      ccGAACACAAACGCCAGGAGCTGATCACCGCCCTGCTGCACGCCAGCCGCGGCGGCCTCGACCCGATCTATTGCGACACAAGCCCCTGCACCCTGCGCCTGGTGCAGGACCTGAGc                               >  8:161963/1‑116 (MQ=255)                                                                                                                                                      |                                                                                                                                                 CCGGCCTATGCCGACCGCGAGCAAAGCTCGCTGCTGGACAAAACCCGCGCCCTGCTGGAAAAGGCCGGTTACCAGGTGGTGTTCCCCGACAACGCCGACAGCCTGT‑GCTGCGGCCAACCGTTCGCCTCCAAGGGCTACCCCGAGCAGGCCGAACACAAACGCCAGGAGCTGATCACCGCCCTGCTGCACGCCAGCCGCGGCGGCCTCGACCCGATCTATTGCGACACAAGCCCCTGCACCCTGCGCCTGGTGCAGGACCTGAGCGACACCCGGCTGGACCTGTACGACCCCGT  >  NC_002947/5388636‑5388928

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.