| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 80495 = | 62 (1.270) | 3 (0.070) | 3/246 | NT | 5.4% | coding (110/558 nt) | tsaC | threonylcarbamoyl‑AMP synthase |
| ? | NC_002947 | 80536 = | 46 (1.000) | coding (151/558 nt) | tsaC | threonylcarbamoyl‑AMP synthase | |||||
TTCGGCCCCGGCCAGGTGCTGCTCATGCGGTCGATCCAGTCCTCGGGGAAGTCCTCGAACAGGAAGTCGAACTGACGGATATTGTCAGCGATCAGAATCAGCCCTTTATCCACAGGACGCGACTTCAGCGCCAACAGGCGATACACCGCGTCCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/80648‑80495‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgcgtcctGTGGATAAAGGGCTGATTCTGATCGCTGACAATATCCGTCAGTTCGACTTCCTGTTCGAGGACTTCCCCGAGGACTGGATCGACCGCATGAGCAGCACCTGGCCGGGGCCGAACACCTGGCTGGTGCCGCATCAGGACCTGTT > NC_002947/80536‑80678 TTCGGCCCCGGCCAGGTGCTGCTCATGCGGTCGATCCAGTCCTCTGGGAAGTCCTCTAACAGGAAGGCGAACTGACGGATATTGTCAGCGATCAGAATCAGCCCTTTATCCACAGGACGCGACTTCAGCGCCAACAGGCGATACACCGC < 7:188127/149‑1 CTCGAACAGGAAGTCGAACTGACGGATATTGTCAGCGATCAGAATCAGCCCTTTATCCACAGGACGCGACTTCAGCGCCAACAGGCGATACACCGC > 7:155120/1‑96 CTCGAACAGGAAGTCGAACTGACGGATATTGTCAGCGATCAGAATCAGCCCTTTATCCACAGGACGCGACTTCAGCGCCAACAGGCGATACACCGC < 8:155120/96‑1 TGACGGATATTGTCAGCGATCAGAATCAGCCCTTTATCCACAGGACGCGACTTCAGCGCCAACAGGCGATACACCGC < 8:73781/77‑1 ACAGGACGCGACTTCAGCGCCAACAGGCGATACACCGCGTCCTGTGGATAAAGGGCTGATTCTGATCGCTGACAATATCCGTCAGTTCGACTTCCTGTTCGAGGACTTCCCCGAGGACTGGATCGACCGCATGAGCAGCACCTGGCCGG > 2:304150/1‑149 AGGACGCGACTTCAGCGCCAACAGGCGATACACCGCGTCCTGTGGATAAAGGGCTGATTCTGATCGCTGACAATATCCGTCAGTTCGACTTCCTGTTCGAGGACTTCCCCGAGGACTGGATCGACCGCATGAGCAGCACCTGGCCGGG < 1:66298/148‑1 AGGACGCGACTTCAGCGCCAACAGGCGATACACCGCGTCCTGTGGATAAAGGGCTGATTCTGATCGCTGACAATATCCGTCAGTTCGACTTCCTGTTCGAGGACTTCCCCGAGGACTGGATCGACCGCATGAGCAGCACCTGGCCGGG > 2:66298/1‑148 CGTCCTGTGGATAAAGGGCTGATTCTGATCGCTGACAATATCCGTCAGTTCGACTTCCTGTTCGAGGACTTCCCCGAGGACTGGATCGACCGCATGAGCAGCACCTGGCCGGGGCCGAACACCTGGCTGGTGCCGCATCAGGACCTGTT > 8:262959/1‑149 TTCGGCCCCGGCCAGGTGCTGCTCATGCGGTCGATCCAGTCCTCGGGGAAGTCCTCGAACAGGAAGTCGAACTGACGGATATTGTCAGCGATCAGAATCAGCCCTTTATCCACAGGACGCGACTTCAGCGCCAACAGGCGATACACCGCGTCCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/80648‑80495‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgcgtcctGTGGATAAAGGGCTGATTCTGATCGCTGACAATATCCGTCAGTTCGACTTCCTGTTCGAGGACTTCCCCGAGGACTGGATCGACCGCATGAGCAGCACCTGGCCGGGGCCGAACACCTGGCTGGTGCCGCATCAGGACCTGTT > NC_002947/80536‑80678 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |