New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 116151	51 (1.040)	3 (0.060)	3/250	NT	5.9%	coding (454/894 nt)	PP_0110	CyoE‑like protoheme IX farnesyltransferase
	?	NC_002947	= 116188	47 (1.010)					coding (491/894 nt)	PP_0110	CyoE‑like protoheme IX farnesyltransferase

GGCGCTGCTGGGCATGGTCCTGCTGCTGGTGTTCACCAACGCCCTCACCGCCTGGCTGACCCTGGCCTCATTACTCGGTTATGCGGTGCTCTACACCGGCTTTCTCAAGCGCGCCACGCCACAGAACATCGTCATCGGTGGCCTGGCCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/116003‑116151 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tggccgCTTACCGCCACCCAGCCGAGCAACGGCGGAGCGGCACCGGCCAGGCCACCGATGACGATGTTCTGTGGCGTGGCGCGCTTGAGAAAGCCGGTGTAGAGCACCGCATAACCGAGTAATGAGGCCAGGGTCAGCCAGGCGGTGAGGGC  <  NC_002947/116188‑116043                                                                                                                                                                                                                                                                                                         GGCGCTGCTGGGCATGGTCCTGCTGCTGGTGTTCACCAACGCCCTCACCGCCTGGCTGACCCTGGCCTCATTACTCGGTTATGCGGTGCTCTACACCGGCTTTCTCAAGCGCGCCACGCCACAGAACATCGTCATCGGTGGCCTGGCCG                                                                                                                                                    >  4:148930/1‑149  GCGCTGCTGGGCATGGTCCTGCTGCTGGTGTTCACCAACGCCCTCACCGCCTGGCTGACCCTGGCCTCATTACTCGGTTATGCGGTGCTCTACACCGGCTTTCTCAAGCGCGCCACGCCACAGAACATCGTCATCGGTGGCCTGGCCG                                                                                                                                                    <  4:24878/148‑1      TGCTGGGCATGGTCCTGCTGCTGGTGTTCACCAACGCCCTCACCGCCTGGCTGACCCTCGCCTGATTACTCGGTTATGCGGTGCTCTAAACCGGCTTTCTCAAGCTCGCCACGCCACTGAACTTCGTCAGCGGAGGCCTGGCCGCTgcc                                                                                                                                               >  5:301738/1‑146                   CCTGCTGCTGGTGTTCACCAACGCCCTCACCGCCTGGCTGACCCTGGCCTCATTACTCGGTTATGCGGTGCTCTACACCGGCTTTCTCAAGCGCGCCACGCCACTGAACATCGTCATCGGTGGCCTGGCCG                                                                                                                                                    <  5:79446/131‑1                   CCTGCTGCTGGTGTTCACCAACGCCCTCACCGCCTGGCTGACCCTGGCCTCATTACTCGGTTATGCGGTGCTCTACACCGGCTTTCTCAAGCGCGCCACGCCACTGAACATCGTCATCGGTGGCCTGGCCG                                                                                                                                                    >  6:79446/1‑131                                            CTCACCGCCTGGCTGACCCTGGCCTCATTACTCGGTTATGCGGTGCTCTACACCGGCTTTCTCAAGCGCGCCACGCCACAGAACATCGTCATCGGTGGCCTGGCCGCTTACCGCCACCCAGCCGAGCAACGGCAGAGCGGCACCGGC                                                                                                           >  3:221859/1‑147                                               ACCGCCTGGCTGACCCTGGCCTCATTACTCGGTTATGCGGTGCTCTACACCGGCTTTCTCAAGCGCGCCACGCCACAGAACATCGTCATCGGTGGCCTGGCCGCTTACCGCCACCCAGCCGAGCAACGGCGGAGCGGCACCGGCCAGG                                                                                                       <  8:263369/148‑1                                               ACCGCCTGGCTGACCCTGGCCTCATTACTCGGTTATGCGGTGCTCTACACCGGCTTTCTCAAGCGCGCCACGCCACAGAACATCGTCATCGGTGGCCTGGCCGCTTACCGCCACCCAGCCGAGCAACGGCAGAGCGGCACCGGCCAG                                                                                                        <  4:221859/147‑1                                                                                                                                                TGGCCGCTTACCGCCACCCAGCCGAGCAACGGCGGAGCGGCACCGGCCAGGCCACCGATGACGATGTTCTGTGGCGTGGCGCGCTTGAGAAAGCCGGTGTAGAGCACCGCATAACCGAGTAATGAGGCCAGGGTCAGCCAGGCGGTGAG     >  8:175825/1‑149                                                                                                                                                  GCCGCTTACCGCCACCCAGCCGAGCAACGGCGGAGCGGCACCGGCCAGGCCACCGATGACGATGTTCTGTGGCGTGGCGCGCTTGAGAAAGCCGGTGTAGAGCACCGCATAACCGAGTAATGAGGCCAGGGTCAGCCAGGCGGTGAGG    <  3:171731/148‑1                                                                                                                                                   CCGCTTACCGCCACCCAGCCGAGCAACGGCGGAGCGGCACCGGCCAGGCCACCGATGACGATGTTCTGTGGCGTGGCGCGCTTGAGAAAGCCGGTGTAGAGCACCGCATAACCGAGTAATGAGGCCAGGGTCAGCCAGGCGGTGAGGGC  <  3:96104/149‑1                                                                                                                                                   CCGCTTACCGCCACCCAGCCGAGCAACGGCGGAGCGGCACCGGCCAGGCCACCGATGACGATGTTCTGTGGCGTGGCGCGCTTGAGAAAGCCGGTGTAGAGCACCGCATAACCGAGTAATGAGGCCAGGGTCAGCCAGGCGGTGAGGGC  >  8:45535/1‑149                                                                                                                                                    CGCTTACCGCCACCCAGCCGAGCAACGGCGGAGCGGCACCGGCCAGGCCACCGATGACGATGTTCTGTGGCGTGGCGCGCTTGAGAAAGCCGGTGTAGAGCACCGCATAACCGAGTAATGAGGCCAGGGTCAGCCAGGCGGTGAGG    >  5:104053/1‑146                                                                                                                                                    CGCTTACCGCCACCCAGCCGAGCAACGGCGGAGCGGCACCGGCCAGGCCACCGATGACGATGTTCTGTGGCGTGGCGCGCTTGAGAAAGCCGGTGTAGAGCACCGCATAACCGAGTAATGAGGCCAGGGTCAGCCAGGCGGTGAGG    <  6:104053/146‑1                                                                                                                                                                                                                                                                                                         GGCGCTGCTGGGCATGGTCCTGCTGCTGGTGTTCACCAACGCCCTCACCGCCTGGCTGACCCTGGCCTCATTACTCGGTTATGCGGTGCTCTACACCGGCTTTCTCAAGCGCGCCACGCCACAGAACATCGTCATCGGTGGCCTGGCCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/116003‑116151 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tggccgCTTACCGCCACCCAGCCGAGCAACGGCGGAGCGGCACCGGCCAGGCCACCGATGACGATGTTCTGTGGCGTGGCGCGCTTGAGAAAGCCGGTGTAGAGCACCGCATAACCGAGTAATGAGGCCAGGGTCAGCCAGGCGGTGAGGGC  <  NC_002947/116188‑116043

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.