| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 199997 = | 41 (0.840) | 7 (0.140) | 6/260 | NT | 14.7% | coding (5503/26049 nt) | PP_0168 | putative surface adhesion protein |
| ? | NC_002947 | 207936 = | NA (NA) | coding (13442/26049 nt) | PP_0168 | putative surface adhesion protein | |||||
CTGGTTTCGCCAGCCTTGATGGTGACCTGAGCATTGTTGCTCAGGGTCACGACCAGGTCGTGGGCCAGCGGCTGGTTGACGTGCACGGTGAAGGTCGGTTTGACGTTCTCGGCCACCGAAGTCTGGTCGGCCGTGATGGTGACCTTGAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/200145‑199997‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cCAGGTACGCCGGGCAACGAAGGCGACCTGGTCAAGGTCACCATCACAGCCGACCAGACTTCGGTGGCCGAGAACGTCAAACCGACCTTCACTGTTCACGTCAACCAGCCGCTGGCTCACGACCTGGTCGTGACCCTGAGCAACAATGC > NC_002947/207936‑208083 CTGGTTTCGCCAGCCTTGATGGTGACCTGAGCATTGTTGCTCAGGGTCACGACCAGGTCGTGGGCCAGCGGCTGGTTGACGTGCACGGTGAAGGTCGGTTTGACGTTCTCGGCCACCGAAGTCTGGTCGGCCGTGATGGTGACCTTGAC < 2:51693/149‑1 ggcgTTGTTGCTCAGGGTCACGACCAGGTCGTGAGCCAGCGGCTGGTTTACGTGCACGGTGAAGATCGGTTTGACGTTCTCGGCCACCGAAGTCTGGTCGGCTGTGATGGTGACCTTGACCAGGTACGCCGGGCAACGAAGGCGACCT < 8:246700/144‑1 gGCATTGTTGCTCAGGGTCACGACCAGGTCGTGAGCCAGCGGCTGGTTGACGTGAACAGTGAAGGTCGGTTTGACGTTCTCGGCCACCGAAGTCTGGTCGGCTGTGATGGTGACCTTGACCAGGTACGCCGGGCAACGAAGGCGACCTG < 4:105590/148‑1 gGCATTGTTGCTCAGGGTCACGACCAGGTCGTGAGCCAGCGGCTGGTTGACGTGAACAGTGAAGGTCGGTTTGACGTTCTCGGCCACCGAAGTCTGGTCGGCTGTGATGGTGACCTTGACCAGGTACGCCGGGCAACGAAGGCGACC < 1:15269/146‑1 gTTGTTGCTCAGGGTCACGACCAGGTCGTGGGCCAGCGGCTGGTTGACGTGCACGGTGAAGGTCGGCTTGACGTTCTCGGCCACCGAGGTCTGGTCGGCGGTGATGGTGACCTTGACCAGGTACGCCGGGCAACGAAGGCGACCTGGTC < 1:306/148‑1 GTTGCTCAGGGTCACGACCAGGTCGTGAGCCAGCGGCTGGTTGACGTGAACAGTGAAGGTCGGTTTGACGTTCTCGGCCACCGAAGTCTGGTCGGCTGTGATGGTGACCTTGACCAGGTACGCCGGGCAACGAAGGCGACCTGGTCAA < 7:188787/148‑1 TCACGACCAGGTCGTGAGCCAGCGGCTGGTTGACGTGAACAGTGAAGGTCGGTTTGACGTTCTCGGCCACCGAAGTCTGGTCGGCTGTGATGGTGACCTTGACCAGGTACGCCGGGCAACGAAGGCGACCTGGTC > 1:103616/1‑135 TCACGACCAGGTCGTGAGCCAGCGGCTGGTTGACGTGAACAGTGAAGGTCGGTTTGACGTTCTCGGCCACCGAAGTCTGGTCGGCTGTGATGGTGACCTTGACCAGGTACGCCGGGCAACGAAGGCGACCTGGTC < 2:103616/135‑1 CCAGGTACGCCGGGCAACGAAGGCGACCTGGTCAAGGTCACCATCACAGCCGACCAGACTTCGGTGGCCGAGAACGTCAAACCGACCTTCACTGTTCACGTCAACCAGCCGCTGGCTCACGACCTGGTCGTGACCCTGAGCAACAATGC > 7:254835/1‑149 CTGGTTTCGCCAGCCTTGATGGTGACCTGAGCATTGTTGCTCAGGGTCACGACCAGGTCGTGGGCCAGCGGCTGGTTGACGTGCACGGTGAAGGTCGGTTTGACGTTCTCGGCCACCGAAGTCTGGTCGGCCGTGATGGTGACCTTGAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/200145‑199997‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cCAGGTACGCCGGGCAACGAAGGCGACCTGGTCAAGGTCACCATCACAGCCGACCAGACTTCGGTGGCCGAGAACGTCAAACCGACCTTCACTGTTCACGTCAACCAGCCGCTGGCTCACGACCTGGTCGTGACCCTGAGCAACAATGC > NC_002947/207936‑208083 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |