New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	199997 =	41 (0.840)	7 (0.140)	6/260	NT	14.7%	coding (5503/26049 nt)	PP_0168	putative surface adhesion protein
	?	NC_002947	207936 =	NA (NA)					coding (13442/26049 nt)	PP_0168	putative surface adhesion protein

TGTCGGCACCAACGCGCCGGTGATCAATGCCATCGACGCGGTCAGCGGCGCAGATGCGTGGAAGTTTGAAAACCTGAACCTGGACAAGACCCCGGTCAGCACCGAGGTCACCGACGAGCCAGGCACTCCAGGCAACGAAGGCGACATCGTCAAGGTCACCATCACGGCCGACCAGACTTCGGTGGCCGAGAACGTCAAACCGACCTTCACCGTGCACGTCAACCAGCCGCTGGCCCACGACCTGGTCGTGACCCTGAGCAACAATGCTCAGGTCACCATCAAGGCTGGCGAAACCAG  >  NC_002947/199849‑200145                                                                                                                                                     |                                                                                                                                                     gcattgttgctcagggtcacgaccaggtcgtgagccagcggctggttgacgtgaacagtgaaggtcggtttgacgttctcggccaccgaagtctggtcggctgtgatggtgaccttgaccaggtcgccttcgttgcccggcgtacctgg                                                                                                                                                      >  7:254835‑M1/149‑149 (MQ=255)   tCGGCACCAACGCGCCGGTGATCAATGCCATCGACGCGGTCAGCGGCGCAGATGCGTGGAAGTTTGAAAACCTGAACCTGGACAAGACCCCGGTCAGCACCGAGGTCACCGACGAGCCAGGCACTCCAGGCAACGAAGGCGACATCGt                                                                                                                                                     >  8:165/1‑148 (MQ=255)      gCACCAACGCGCCGGTGATCAATGCCATCGACGCGGTCAGCGGCGCAGATGCGTGGAAGTTTGAAAACCTGAACCTGGACAAGACCCCGGTCAGCACCGAGGTCACCGACGAGCCAGGCACTCCAGGCAACGAAGGCGACATCGTCAAg                                                                                                                                                 <  4:18578/149‑1 (MQ=255)      gCACCAACGCGCCGGTGATCAATGCCATCGACGCGGTCAGCGGCGCAGATGCGTGGAAGTTTGAAAACCTGAACCTGGACAAGACCCCGGTCAGCACCGAGGTCACCGACGAGCCAGGCACTCCAGGCAACGAAGGCGACATCGTCAAg                                                                                                                                                 <  5:181547/149‑1 (MQ=255)        aCCAACGCGCCGGTGATCAATGCCATCGACGCGGTCAGCGGCGCAGATGCGTGGAAGTTTGAAAACCTGAACCTGGACAAGACCCCGGTCAGCACCGAGGTCACCGACGAGCCAGGCACTCCAGGCAACGAAGGCGACATCGTCAAGGt                                                                                                                                               >  3:98290/1‑149 (MQ=255)           aaCGCGCCGGTGATCAATGCCATCGACGCGGTCAGCGGCGCAGATGCGTGGAAGTTTGAAAACCTGAACCTGGACAAGACCCCGGTCAGCACCGAGGTCACCGACGAGCCAGGCACTCCAGGCAACGAAGGCGACATCGTCAAGGTCAc                                                                                                                                            >  1:128513/1‑149 (MQ=40)           aaCGCGCCGGTGATCAATGCCATCGACGCGGTCAGCGGCGCAGATGCGTGGAAGTTTGAAAACCTGAACCTGGACAAGACCCCGGTCAGCACCGAGGTCACCGACGAGCCAGGCACTCCAGGCAACGAAGGCGACATCGTCAAGGTCAc                                                                                                                                            <  7:80386/149‑1 (MQ=40)             cgcgCCGGTGATCAATGCCATCGACGGGGTCAGCGGCGCAGATGCGTGGAAGTTTGAAAACCTGAACCTGGACAAGACCCCGGTCAGCACCGAGGTCACCGACGAGCCAGGCACTCCAGGCAACGAAGGCGACATCGTCAAGGTCACCa                                                                                                                                          >  1:3583/1‑149 (MQ=255)                gcCGGTGATCAATGCCATCGACGCGGTCAGCGGCGCAGATGCGTGGAAGTTTGAAAACCTGAACCTGGACAAGACCCCGGTCAGCACCGAGGTCACCGACGAGCCAGGCACTCCAGGCAACGAAGGCGACATCGTCAAGGTCACCATCa                                                                                                                                       <  2:35432/149‑1 (MQ=37)                  cGGTGATCAATGCCATCGACGCGGTCAGCGGCGCAGATGCGTGGAAGTTTGAAAACCTGAACCTGGACAAGACCCCGGTCAGCACCGAGGTCACCGACGAGCCAGGCACTCCAGGCAACGAAGGCGACATCGTCAAGGTCACCATCACg                                                                                                                                     >  3:170114/1‑149 (MQ=37)                    gTGATCAATGCCATCGACGCGGTCAGCGGCGCAGATGCGTGGAAGTTTGAAAACCTGAACCTGGACAAGACCCCGGTCAGCACCGAGGTCACCGACGAGCCAGGCACTCCAGGCAACGAAGGCGACATCGTCAAGGTCACCATCACGGc                                                                                                                                   <  8:38477/149‑1 (MQ=37)                           aTGCCATCGACGCGGTCAGCGGCGCAGATGCGTGGAAGTTTGAAAACCTGAACCTGGCCCAGACCCCGGGCCGCACCGAGGTCACCGCCGCGCCAGGCACTCCCGGCAACGAAGGCGACATCGTCAAGGTCACCATCACGGCCGcccc                                                                                                                             >  5:142925/1‑147 (MQ=11)                            tGCCATCGACGCGGTCAGCGGCGCAGATGCGTGGAAGTTTGAAAACCTGAACCTGGACAAGACCCCGGTCAGCACCGAGGTCACCGACGAGCCAGGCACTCCAGGCAACGAAGGCGACATCGTCAAGGTCACCATCACGGCCGACCAGa                                                                                                                           <  2:3583/149‑1 (MQ=37)                                aTCGACGCGGTCAGCGGCGCAGATGCGTGGAAGTTTGAAAACCTGAACCTGGCCAAGACCCCGGTCAGCACCGAGGTCACCGACGAGCCAGGCACTCCGGGCAACGAAGGCGACATCGTCAAGGTCACAATCACGGCCGACCAGACTTc                                                                                                                       >  1:297664/1‑149 (MQ=255)                                aTCGACGCGGTCAGCGGCGCAGATGCGTGGAAGTTTGAAAACCTGAACCTGGACAAGACCCCGGTCAGCACCGAGGTCACCGACGAGCCAGGCACTCCAGGCAACGAAGGCGACATCGTCAAGGTCACCATCACGGCCGACCAGACTTc                                                                                                                       >  8:123002/1‑149 (MQ=37)                                 tCGACGCGGTCAGCGGCGCAGATGCGTGGAAGTTTGAAAACCTGAACCTGGACAAGACCCCGGTCAGCACCGAGGTCACCGACGAGCCAGGCACTCCAGGCAACGAAGGCGACATCGTCAAGGTCACCATCACGGCCGACCAGACTTCg                                                                                                                      <  2:128513/149‑1 (MQ=37)                                    aCGCGGTCAGCGGCGCAGATGCGTGGAAGTTTGAAAACCTGAACCTGGACAAGACCCCGGTCAGCACCGAGGTCACCGACGAGCCAGGCACTCCAGGCAACGAAGGCGACATCGTCAAGGTCACCATCACGGCCGACCAGACTTCGGTg                                                                                                                   <  4:175017/149‑1 (MQ=38)                                       cgGTCAGCGGCGCAGATGCGTGGAAGTTTGAAAACCTGAACCTGGACAAGACCCCGGTCAGCACCGAGGTCACCGACGAGCCAGGCACTCCAGGCAACGAAGGCGACATCGTCAAGGTCACCATCACGGCCGACCAGACTTCGGTGGcc                                                                                                                <  4:98290/149‑1 (MQ=39)                                             gcggcgCAGATGCGTGGAAGTTTGAAAACCTGAACCTGGACAAGACCCCGGTCAGCACCGAGGTCACCGACGAGCCAGGCACTCCAGGCAACGAAGGCGACATCGTCAAGGTCACCATCACGGCCGACCAGACTTCGGTGGCCGAGAAc                                                                                                          <  2:126158/149‑1 (MQ=39)                                             gcggcgCAGATGCGGGGAAGGTTGAAAACCTGAACCTGGACAAGCCCCCGGTCAGCACCGAGGTCACCGACGAGCCAGGCACTCCAGGCAACGAAGGCGACATCGTCAAGGTCACCATCACGGCCGACCAGACTTCGGTGGCCGAGAAc                                                                                                          <  6:142925/149‑1 (MQ=255)                                                       tGCGTGGAAGTTTGAAAACCTGAACCTGGACAAGACCCCGGTCAGCACCGAGGTCACCGACGAGCCAGGCACTCCAGGCAACGAAGGCGACATCGTCAAGGTCACCATCACGGCCGACCAGACTTCGGTGGCCGAGAACGTCAAACCGa                                                                                                >  4:300590/1‑149 (MQ=255)                                                           tGGAAGTTTGAAAACCTGAACCTGGACAAGACCCCGGTCAGCACCGAGGTCACCGACGAGCCAGGCACTCCAGGCAACGAAGGCGACATCGTCAAGGTCACCATCACGGCCGACCAGACTTCGGTGGCCGAGAACGTCAAACCGACCtt                                                                                            <  3:142421/149‑1 (MQ=39)                                                             gAAGTTTGAAAACCTGAACCTGGACAAGACCCCGGTCAGCACCGAGGTCACCGACGAGCCAGGCACTCCAGGCAACGAAGGCGACATCGTCAAGGTCACCATCACGGCCGACCAGACTTCGGTGGCCGAGAACGTCAAACCGACCTTCa                                                                                          <  7:123002/149‑1 (MQ=39)                                                               aGTTTGAAAACCTGAACCTGGACAAGACCCCGGTCAGCACCGAGGTCACCGACGAGCCAGGCACTCCAGGCAACGAAGGCGACATCGTCAAGGTCACCATCACGGCCGACCAGACTTCGGTGGCCGAGAACGTCAAACCGACCTTCAcc                                                                                        <  3:35020/149‑1 (MQ=39)                                                                                  ggACAAGACCCCGGTCAGCACCGAGGTCACCGACGAGCCAGGCACTCCAGGCAACGAAGGCGACATCGTCAAGGTCACCATCACGGCCGCCCAGACTTCGGTGGCCGAGAACGTCAAACCGACCTTCACCGTGc                                                                                    >  6:240926/1‑134 (MQ=37)                                                                                   gACAAGACCCCGGTCAGCACCGAGGTCACCGACGAGCCAGGCACTCCAGGCAACGAAGGCGACATCGTCAAGGTCACCATCACGGCCGACCAGACTTCGGTGGCCGAGAACGTCAAACCGACCTTCACCGTGCACGTCAACCAGCCg                                                                      <  1:92820/147‑1 (MQ=37)                                                                                        gACCCCGGTCAGCACCGAGGTCACCGACGAGCCAGGCACTCCAGGCAACGAAGGCGACATCGTCAAGGTCACCATCACGGCCGACCAGACTTCGGTGGCCGAGAACGTCAAAc                                                                                                   <  7:172123/113‑1 (MQ=38)                                                                                        gACCCCGGTCAGCACCGAGGTCACCGACGAGCCAGGCACTCCAGGCAACGAAGGCGACATCGTCAAGGTCACCATCACGGCCGACCAGACTTCGGTGGCCGAGAACGTCAAAc                                                                                                   >  8:172123/1‑113 (MQ=38)                                                                                         aCCCCGGTCAGCACCGAGGTCACCGACGAGCCAGGCACTCCAGGCAACGAAGGCGACATCGTCAAGGTCACCATCACGGCCGACCAGACTTCGGTGGCCGAGAACGTCAAACCGACCTTCACCGTGCACGTCAACCAGCCGCTGGCCCa                                                              >  6:259939/1‑149 (MQ=37)                                                                                          ccccGGTCAGCACCGAGGTCACCGACGAGCCAGGCACTCCAGGCAACGAAGGCGACATCGTCAAGGTCACCATCACGGCCGACCAGACTTCGGTGGCCGAGAACGTCAAACCGACCTTCACCGTGCACGTCAACCAGCCGCTGGCCCAc                                                             >  8:101480/1‑149 (MQ=37)                                                                                                   gCACCGAGGTCACCGACGAGCCAGGCACTCCAGGCAACGAAGGCGACATCGTCAAGGTCACCATCACGGCCGACCAGACTTCGGTGGCCGAGAACGTCAAACCGACCTTCACCGTGCACGTCAACCAGCCGCTGGCCCACGACCTGGTc                                                    <  3:300590/149‑1 (MQ=37)                                                                                                     aCCGAGGTCACCGACGAGCCAGGCACTCCAGGCAACGAAGGCGACATCGTCAAGGTCACCATCACGGCCGACCAGCCTTCGGTGCCCGAGAACGTCAAACCGACCTTCACCGTGCACGTCACCCAGCCGCTGGCCCACGAGCTGGTCGt                                                  >  5:57074/1‑149 (MQ=255)                                                                                                      ccGAGGTCACCGACGAGCCAGGCACTCCAGGCAACGAAGGCGACATCGTCAAGGTCACCATCACGGCCGACCAGACTTCGGTGGCCGAGAACGTCAAACCGACCTTCACCGTGCACGTCAACCAGCCGCTGGCCCACGACCTGGTCGt                                                  >  7:94010/1‑148 (MQ=37)                                                                                                         aGGTCACCGACGAGCCAGGCACTCCAGGCAACGAAGGCGACATCGTCAAGGTCACCATCACGGCCGACCAGACTTCGGTGGCCGAGAACGTCAAACCGACCTTCACCGTGCACGTCAACCAGCCGCTGGCCCACGACCTGGTCGTGAcc                                              <  8:94010/149‑1 (MQ=37)                                                                                                                cgacgaGCCAGGCACTCCAGGCAACGAACGCGACATCCTCAAGCTCACCATCACGAACGACCAGACTACGGAGCCCGAGAACGTCAAACCGACCATCACCGTCCACGTCAACAAGACGCTGGCCCACGACCTGGTCGTGACCCTGAGc                                        >  8:58121/1‑148 (MQ=11)                                                                                                                   ttgaccaggtcgccttcgttgcccggcgtacctgGTCAAGGTCACCATCACAGCCGACCAGACTTCGGTGGCCGAGAACGTCAAACCGACCTTCACTGTTCACGTCAACCAGCCGCTGGCTCACGACCTGGTCGTGACCCTGAGcaac                                     <  7:188787‑M1/114‑1 (MQ=255)                                                                                                                     gaccaggtcgccttcgttgcccggcgtacctgGTCAAGGTCACCATCACCGCCGACCAGACCTCGGTGGCCGAGAACGTCAAGCCGACCTTCACCGTGCACGTCAACCAGCCGCTGGCCCACGACCTGGTCGTGACCCTGAgcaacaac                                  <  1:306‑M1/117‑2 (MQ=255)                                                                                                                     gaccaggtcgccttcgttgcccggcgtacctgGTCAAGGTCACCATCACAGCCGACCAGACTTCGGTGGCCGAGAACGTCAAACCGACCTTCACTGTTCACGTCAACCAGCCGCTGGCTCACGACCTGGTCGTGa                                                >  1:103616‑M1/33‑135 (MQ=255)                                                                                                                     gaccaggtcgccttcgttgcccggcgtacctgGTCAAGGTCACCATCACAGCCGACCAGACTTCGGTGGCCGAGAACGTCAAACCGACCTTCACTGTTCACGTCAACCAGCCGCTGGCTCACGACCTGGTCGTGa                                                <  2:103616‑M1/103‑1 (MQ=255)                                                                                                                        caggtcgccttcgttgcccggcgtacctgGTCAAGGTCACCATCACAGCCGACCAGACTTCGGTGGCCGAGAACGTCAAACCGACCTTCACTGTTCACGTCAACCAGCCGCTGGCTCACGACCTGGTCGTGACCCTGAGCAACAATgcc                               <  4:105590‑M1/120‑2 (MQ=255)                                                                                                                         aggtcgccttcgttgcccggcgtacctgGTCAAGGTCACCATCACAGCCGACCAGACTTCGGTGGCCGAGAACGTCAAACCGATCTTCACCGTGCACGTAAACCAGCCGCTGGCTCACGACCTGGTCGTGACCCtgagcaacaacgcc                               <  8:246700‑M1/120‑5 (MQ=255)                                                                                                                          ggtcgccttcgttgcccggcgtacctgGTCAAGGTCACCATCACAGCCGACCAGACTTCGGTGGCCGAGAACGTCAAACCGACCTTCACTGTTCACGTCAACCAGCCGCTGGCTCACGACCTGGTCGTGACCCTGAGCAACAATgcc                               <  1:15269‑M1/120‑2 (MQ=255)                                                                                                                           gCACTCCAGGCAACGAAGGCGACATCGTCAAGGTCACCATCACGGCCGACCAGACTTCGGTGGCCGAGAACGTCAAACCGACCTTCACCGTGCACGTCAACCAGCCGCTGGCCCACGACCTGGTCGTGACCCTGAGCAACAATGCTCAg                            <  4:170114/149‑1 (MQ=255)                                                                                                                                      aaCGAAGGCGACATCGTCAAGGTCACCATCACGGCCGACCAGACTTCGGTGGCCGAGAACGTCAAACCGACCTTCACCGTGCACGTCAACCAGCCGCTGGCCCACGACCTGGTCGTGACCCTGAGCAACAATGCTCAGGTCACCATc                   >  2:11596/1‑147 (MQ=39)                                                                                                                                      aaCGAAGGCGACATCGTCAAGGTCACCATCACGGCCGACCAGACTTCGGTGGCCGAGAACGTCAAACCGACCTTCACCGTGCACGTCAACCAGCCGCTGGCCCACGACCTGGTCGTGACCCTGAGCAACAATGCTCAGGTCACCATCaa                 <  7:165/149‑1 (MQ=39)                                                                                                                                       aCGAAGGCGACATCGTCAAGGTCACCATCACGGCCGACCAGACTTCGGTGGCCGAGAACGTCAAACCGACCTTCACCGTGCACGTCAACCAGCCGCTGGCCCACGACCTGGTCGTGACCCTGAGCAACAATGCTCAGGTCACCATCAAg                >  6:21541/1‑149 (MQ=39)                                                                                                                                         gAAGGCGACATCGTCAAGGTCACCATCACGGCCGACCAGACTTCGGTGGCCGAGAACGTCAAACCGACCTTCACCGTGCACGTCAACCAGCCGCTGGCCCACGACCTGGTCGTGACCCTGAGCAACAATCCTCAGGTCACCATCAAGGc              >  7:218663/1‑149 (MQ=255)                                                                                                                                             gCGACATCGTCATGGTCACCATCAGGGCCGACCAGACTTCGGTGGCCGAGAACGTCAAACCGACCTTCAGCGTGCACGTCAACCAGCCGCTGGCCCACGACCTGGTCGTGACCCTGAGCAACAATGCTCAGGTCACCATCAAGGCTGGc          <  7:58121/149‑1 (MQ=255)                                                                                                                                              cGACATCGTCAAGGTCACCATCACGGCCGACCAGACTTCGGTGGCCGAGAACGTCAAACCGACCTTCACCGTGCACGTCAACCAGCCGCTGGCCCACGACCTGGTc                                                    >  3:79079/1‑106 (MQ=40)                                                                                                                                              cGACATCGTCAAGGTCACCATCACGGCCGACCAGACTTCGGTGGCCGAGAACGTCAAACCGACCTTCACCGTGCACGTCAACCAGCCGCTGGCCCACGACCTGGTc                                                    <  4:79079/106‑1 (MQ=40)                                                                                                                                                     GTCAAGGTCACCATCACGGCCGACCAGACTTCGGTGGCCGAGAACGTCAAACCGACCTTCACCGTGCACGTCAACCAGCCGCTGGCCCACGACCTGGTCGTGACCCTGAGCAACAATGCTCAGGTCACCATCAAGGCTGGCGAAACCAg  <  2:51693‑M1/149‑1 (MQ=255)                                                                                                                                                     |                                                                                                                                                     TGTCGGCACCAACGCGCCGGTGATCAATGCCATCGACGCGGTCAGCGGCGCAGATGCGTGGAAGTTTGAAAACCTGAACCTGGACAAGACCCCGGTCAGCACCGAGGTCACCGACGAGCCAGGCACTCCAGGCAACGAAGGCGACATCGTCAAGGTCACCATCACGGCCGACCAGACTTCGGTGGCCGAGAACGTCAAACCGACCTTCACCGTGCACGTCAACCAGCCGCTGGCCCACGACCTGGTCGTGACCCTGAGCAACAATGCTCAGGTCACCATCAAGGCTGGCGAAACCAG  >  NC_002947/199849‑200145

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.