| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 250227 = | 47 (0.960) | 3 (0.070) | 3/242 | NT | 6.6% | coding (976/1347 nt) | nfeD | membrane bound peptidase NefD |
| ? | NC_002947 | 250271 = | 42 (0.930) | coding (932/1347 nt) | nfeD | membrane bound peptidase NefD | |||||
GCCTGCTGCTGGCGCTGTATGCGCTGCAGCTGTTGCCGGTGAGTTTTGCCGGGGTGGCGCTGATCCTGCTTGGCATCACCTTCATGATCGCCGAAGCCTTCTTGCCCAGTTTCGGCGTGGTCGGCTTCGGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/250358‑250227‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcttcggcgATCATGAAGGTGATGCCAAGCAGGATCAGCGCCACCCCGGCAAAACTCACCGGCAACAGCTGCAGCGCATACAGCGCCAGCAGCAGGCAGATACCACCGACCACACCGCCCACCGCAGAACCTGGGTTCATGAATTCGAAC > NC_002947/250271‑250411 GCCTGCTGCTGGCGCTGTATGCGCTGCAGCTGTTGCCGGTGAGTTTTGCCGGGGTGGCGCTGATCCTGCTTGGCATCACCTTCATGATCGCCGAAGCCTTCTTGCCCAGTTTCGGCGTGGTCGGCTT < 1:300099/127‑1GCCTGCTGCTGGCGCTGTATGCGCTGCAGCTGTTGCCGGTGAGTTTTGCCGGGGTGGCGCTGATCCTGCTTGGCATCACCTTCATGATCGCCGAAGCCTTCTTGCCCAGTTTCGGCGTGGTCGGCTT > 2:300099/1‑127 CGCCGAAGCCTTCTTGCCCAGTTTCGGCGTGGTCGGCTTCGGCGATCATGAAGGTGATGCCAAGCAGGATCAGCGCCACCCCGGCAAAACTCACCGGCAACAGCTGCAGCGCATACAGCGCCAGCAGCAGGCAGATACCACCGACCACA > 6:132118/1‑149 CCGAAGCCTTCTTGCCCAGTTTCGGCGTGGTCGGCTTCGGCGATCATGAAGGTGATGCCAAGCAGGATCAGCGCCA > 7:146538/1‑76 CCGAAGCCTTCTTGCCCAGTTTCGGCGTGGTCGGCTTCGGCGATCATGAAGGTGATGCCAAGCAGGATCAGCGCCA < 8:146538/76‑1 GGCTTCGGCGATCATGAAGGTGATGCCAAGCAGGATCAGCGCCACCCCGGCAAAACTCACCGGCAACAGCTGCAGCGCATACAGCGCCAGCAGCAGGCAGATACCACCGACCACACCGCCCACCGCAGAACCTGGGTTCATGAATTCG > 3:925/1‑148 GGCTTAGGCGATCATGAAGGTGATGCCAAGCAGGATCAGCGCCACCCAGGCAAAACTCACCGGCAACAGCTGCAGCGCATACAGCGCCAGCTGCAGGCAGATACCACCGACCACACCGCCCACCTCAGAACCTGTGTTCATGAATTCGA < 3:209088/149‑1 CTTCGGCGATCATGAAGGTGATGCCAAGCAGGATCAGCGCCACCCCGGCAAAACTCACCGGCAACAGCTGCAGCGCATACAGCGCCAGCAGCAGGCAGATACCACCGACCACACCGCCCACCGCAGAACCTGGGTTCATGAATTCGAAC < 8:152394/149‑1 GCCTGCTGCTGGCGCTGTATGCGCTGCAGCTGTTGCCGGTGAGTTTTGCCGGGGTGGCGCTGATCCTGCTTGGCATCACCTTCATGATCGCCGAAGCCTTCTTGCCCAGTTTCGGCGTGGTCGGCTTCGGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/250358‑250227‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcttcggcgATCATGAAGGTGATGCCAAGCAGGATCAGCGCCACCCCGGCAAAACTCACCGGCAACAGCTGCAGCGCATACAGCGCCAGCAGCAGGCAGATACCACCGACCACACCGCCCACCGCAGAACCTGGGTTCATGAATTCGAAC > NC_002947/250271‑250411 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |