| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 250227 = | 47 (0.960) | 3 (0.070) | 3/242 | NT | 6.6% | coding (976/1347 nt) | nfeD | membrane bound peptidase NefD |
| ? | NC_002947 | 250271 = | 42 (0.930) | coding (932/1347 nt) | nfeD | membrane bound peptidase NefD | |||||
GGGCCTTGAGAGCCATGCCCAGCACGCCACCGATCAGGAGTGCCGAGAGCAGCGCCAAGGTGCCGATCAAGGCCAGGGGGATGCCGAAACCGGGAGCGTCGGTGTCGATCAGGATCAATGCGCCGACCACAAAGGCAACGATGCCGCCGAAGCCGACCAC‑‑GCCGAAACTGGGCAAGAAGGCTTCGGCGATCATGAAGGTGATGCCAAGCAGGATCAGCGCCACCCCGGCAAAACTCACCGGCAACAGCTGCAGCGCATACAGCGCCAGCAGCAGGCAGATACCACCGACCA > NC_002947/250083‑250373 | gggCCTTGAGAGCCATGCCCAGCACGCCACCGATCAGGAGTGCCGAGAGCAGCGCCAAGGTGCCGATCAAGGCCAGGGGGATGCCGAAACCGGGAGCGTCGGTGTCGATCAGGATCAATGCGCCGACCACAAAGGCAACGATGccgccg < 2:91043/149‑1 (MQ=255)gggCATTGAGAGCCATTCCAAGCACGCCACCGATAAGGAGTGCCGAGAGCAGCGCCAAGGTGCCGATCAAGGCCAGGGGGATGCCGAAACCGGGAGCGTCGGTGTCGATCAGGATCAAAGCGCCGACCACAAAGGCAACGAGgcagcc > 8:235378/1‑148 (MQ=255) ggCCTTGAGAGCCATGCCCAGCACGCCACCGATCAGGAGTGCCGAGAGCAGCGCCAAGGTGCCGATCAAGGCCAGGGGGATGCCGAAACCGGGAGCGTCGGTGTCGATCAGGATCAATGCGCCGACCACAAAGGCAACGATGccgccg > 6:26279/1‑148 (MQ=255) gttcgaattcatgaacccaggttctgcggtgggcggtgtggtcggtggtatctgcctgctgctggcgctgtatgcgctgcagctgttgccggtgagttttgccggggtggcgctgatcctgcttggcatcaccttcatgatCGCCGAAg < 8:152394‑M1/8‑1 (MQ=255) tcgaattcatgaacacaggttctgaggtgggcggtgtggtcggtggtatctgcctgcagctggcgctgtatgcgctgcagctgttgccggtgagttttgcctgggtggcgctgatcctgcttggcatcaccttcatgatCGCCTAAGcc < 3:209088‑M1/10‑1 (MQ=255) cgaattcatgaacccaggttctgcggtgggcggtgtggtcggtggtatctgcctgctgctggcgctgtatgcgctgcagctgttgccggtgagttttgccggggtggcgctgatcctgcttggcatcaccttcatgatCGCCGAAGcc > 3:925‑M1/139‑148 (MQ=255) agagCCATGCCCAGCACGCCACCGATCAGGAGTGCCGAGAGCAGCGCCAAGGTGCCGATCAAGGCCAGGGGGATGCCGAAACCGGGAGCGTCGGTGTCGATCAGGATCAATGCGCCGACCACAAAGGCAACGATGCCGCCGAAGCCGAc < 7:32604/149‑1 (MQ=255) ccATGCCCAGCACGCCACCGATCAGGAGTGCCGAGAGCAGCGCCAAGGTGCCGATCAAGGCCAGGGGGATGCCGAAACCGGGAGCGTCGGTGTCGATCAGGATCAATGCGCCGACCACAAAGGCAACGATGCCGCCGAAg > 5:48494/1‑140 (MQ=255) ccATGCCCAGCACGCCACCGATCAGGAGTGCCGAGAGCAGCGCCAAGGTGCCGATCAAGGCCAGGGGGATGCCGAAACCGGGAGCGTCGGTGTCGATCAGGATCAATGCGCCGACCACAAAGGCAACGATGCCGCCGAAg < 6:48494/140‑1 (MQ=255) ccATGCCCAGCACGCCACCGATCAGGAGTGCCGAGAGCAGCGCCAAGGTGCCGATCAAGGCCAGGGGGATGCCGAAACCGGGAGCGTCGGTGTCGATCAGGATCAATGCGCCGACCACAAAGGCAACGATGCCGCCGAAGCCGACCAC‑‑g > 8:228888/1‑149 (MQ=255) ccATGCCCAGCACGCCACCGATCAGGAGTGCCGAGAGCAGCGCCAAGGTGCCGATCAAGGCCAGGGGGATGCCGAAACCGGGAGCGTCGGTGTCGATCAGGATCAATGCGCCGACCACAAAGGCAACGATGCCGCCGAAGCCGACCAC‑‑g < 5:277303/149‑1 (MQ=255) cccAGCACGCCACCGATCAGGAGTGCCGAGAGCAGCGCCAAGGTGCCGATCAAGGCCAGGGGGATGCCGAAACCGGGAGCGTCGGTGTCGATCAGGATCAATGCGCCGACCACAAAGGCAACGATGCCGCCGAAGCCGACCAC‑‑GCCGa > 4:247657/1‑148 (MQ=255) aCGCCACCGATCAGGAGTGCCGAGAGCAGCGCCAAGGTGCCGATCAAGGCCAGGGGGATGCCGAAACCGGGAGCGTCGGTGTCGATCAGGATCAATGCGCCGACCACAAAGGCAACGATGCCGCCGAAGCCGACCAC‑‑GCCGAAACTggg < 5:26279/149‑1 (MQ=255) gCCACCGATCAGGAGTGCCGAGAGCAGCGCCAAGGTGCCGATCAAGGCCAGGGGGATGCCGAAACCGGGAGCGTCGGTGTCGATCAGGATCAATGCGCCGACCACAAAGGCAACGATGCCGCCGAAGCCGACCAC‑‑GCCGAAACTggg > 8:49185/1‑147 (MQ=255) gCCACCGATCAGGAGTGCCGAGAGCAGCGCCAAGGTGCCGATCAAGGCCAGGGGGATGCCGAAACCGGGAGCGTCGGTGTCGATCAGGATCAATGCGCCGACCACAAAGGCAACGATGCCGCCGAAGCCGACCAC‑‑GCCGAAACTggg < 7:49185/147‑1 (MQ=255) cACCGATCAGGAGTGCCGAGAGCAGCGCCAAGGTGCCGATCAAGGCCAGGGGGATGCCGAAACCGGGAGCGTCGGTGTCGATCAGGATCAATGCGCCGACCACAAAGGCAACGATGCCGCCGAAGCCGACCAC‑‑GCCGAAACTGGGc > 3:172581/1‑146 (MQ=255) acctttgaGGAGTGCCGAGAGCAGCGCCAAGGTGCCGATCTAGGGCAGGGGTATGCCTAAACCGGTATCGTCGGTGTCGATCAGGATCAATGCTCCGACCAGAAAGGCAACGATGCCGCCGAAGCCGACCAC‑‑GCCGAAACTGGGCaaga < 7:272756/142‑1 (MQ=255) ccGATCAGGAGTGCCGAGAGCAGCGCCAAGGTGCCGATCAAGGCCAGGGGGATGCCGAAACCGGGAGCGTCGGTGTCGATCAGGATCAATGCGCCGACCACAAAGGCAACGATGCCGCCGAAGCCGACCAC‑‑GCCGAAACTGGGCaagaa < 4:254622/149‑1 (MQ=255) tCAGGAGTGCCGAGAGCAGCGCCAAGGTGCCGATCAAGGCCAGGGGGATGCCGAAACCGGGAGCGTCGGTGTCGATCAGGATCAATGCGCCGACCACAAAGGCAACGATGCCGCCGAAGCCGACCAC‑‑GCCGAAACTGGGCAAGAAGGCt < 3:141603/149‑1 (MQ=255) gAGTGCCGAGAGCAGCGCCAAGGTGCCGATCAAGGCCAGGGGGATGCCGAAACCGGGAGCGTCGGTGTCGATCAGGATCAATGCGCCGACCACAAAGGCAACGATGCCGCCGAAGCCGACCAC‑‑GCCGAAACTGGGCAAGAAGGCTTCgg > 5:195830/1‑149 (MQ=255) aGTGCCGAGAGCAGCGCCAAGGTGCCGATCAAGGCCAGGGGGATGTCGAAACCGGGAGCGTCGGTGTCGATCAGGATCAATGCGCCGACCACAAAGGCAACGATGCCGCCGAAGCCGACCAC‑‑GCCGAAACTGGGCAAGAAGGCTTCGGc < 1:46127/149‑1 (MQ=255) tgtggtcggtggtatctgcctgctgctggcgctgtatgcgctgcagctgttgccggtgagttttgccggggtggcgctgatcctgcttggcatcaccttcatgatCGCCGAAGCCGACCAC‑‑GCCGAAACTGGGCAAGAAGGCTTCGGCg > 6:132118‑M1/106‑149 (MQ=255) ccGAGAGCAGCTCCAAGGTGCCGATCTAGGCCAGGGGGATGCCGAAACCGGGAGCGTCGGTGTCGATCAGGATCAATGCGCCGACCACAAAGGAAACGATGCCGCCGAAGCCGACCAC‑‑GCCGAAACTGGGCAAGAAGGCTTCGGCGAt < 4:8976/148‑1 (MQ=255) ccGAGAGCAGCGCCAAGGTGCCGATCAAGGCCAGGGGGATGCCGAAACCGGGAGCGTCGGTGTCGATCAGGATCAATGCGCCGACCACAAAGGCAACGATGCCGCCGAAGCCGACCAC‑‑GCCGAAACTGGGCAAGAAGGCTTCGGCGAt > 2:233770/1‑148 (MQ=255) ccGAGAGCAGCGCCAAGGTGCCGATCAAGGCCAGGGGGATGCCGAAACCGGGAGCGTCGGTGTCGATCAGGATCAATGCGCCGACCACAAAGGCAACGATGCCGCCGAAGCCGACCAC‑‑GCCGAAACTGGGCAAGAAGGCTTCGGCGAt > 2:229835/1‑148 (MQ=255) ccGAGAGCAGCGCCAAGGTGCCGATCAAGGCCAGGGGGATGCCGAAAACGGGAGCGTCGGTGTCGATCAGGATCAATGCGCCGACCACAAAGGCAACGATGCCTCCGAAGCCGACCAC‑‑GCCGAAACTGGGCAAGAAGGCTGCGGCGAt > 3:8976/1‑148 (MQ=255) gagCAGCGCCAAGGTGCCGATCAAGGCCAGGGGGATGCCGAAACCGGGAGCGTCGGTGTCGATCAGGATCAATGCGCCGACCACAAAGGCAACGATGCCGCCGAAGCCGACCAC‑‑GCCGAAACTGGGCAAGAAGGCTTCGGCGATCATGa < 3:247657/149‑1 (MQ=255) cagcGCCAAGGTGCCGATCAAGGCCAGGGGGATGCCGAAACCGGGAGCGTCGGTGTCGATCAGGATCAATGCGCCGACCACAAAGGCAACGATGCCGCCGAAGCCGACCAC‑‑GCCGAAACTGGGCAAGAAGGCTTCGGCGATCATGAAgg < 7:276015/149‑1 (MQ=255) gcCAAGGTGCCGATCAAGGCCAGGGGGATGCCGAAACCGGGAGCGTCGGTGTCGATCAGGATCAATGCGCCGACCACAAAGGCAACGATGCCGCCGAAGCCGACCAC‑‑GCCGAAACTGGGCAAGAAGGCTTCGGCGATCATGAAGGTGAt < 1:229835/149‑1 (MQ=255) gcCAAGGTGCCGATCAAGGCCAGGGGGATGCCGAAACCGGGAGCGTCGGTGTCGATCAGGATCAATGCGCCGACCACAAAGGCAACGATGCCGCCGAAGCCGACCAC‑‑GCCGAAACTGGGCAAGAAGGCTTCGGCGATCATGAAGGTGAt < 1:233770/149‑1 (MQ=255) cAAGGTGCCGATCAAGGCCAGGGGGATGCCGAAACCGGGAGCGTCGGTGTCGATCAGGATCAATGCGCCGCCCACAAAGGCAACGATGCCGCCGAAGCCGACCAC‑‑GCCGAAACTGGGCAAGAAGGCTTCGGCGATCATGAAGGTGATGc > 2:94963/1‑149 (MQ=255) aGGTGCCGATCAAGGCCAGGGGGATGCCGAAACCGGGAGCGTCGGTGTCGATCAGGATCAATGCGCCGACCACAAAGGCAACGATGCCGCCGAAGCCGACCAC‑‑GCCGAAACTGGGCAAGAAGGCTTCGGCGATCATGAAGGTGATGcc > 4:11606/1‑148 (MQ=255) tgTGCCCATCAAGGCCATGGGGATGCCGAAACCGGGAGACTCGTTGTCGATCATGATCAATGCGCCGACCACAAAGGAAACTATGCCGCCGAACCCGACCAC‑‑GCCGAAACTGGGCAAGAAGGCTTCGGCGATCATGAAGTTGATGCCa < 6:76707/147‑1 (MQ=255) ggTGCCGATCAAGGCCAGGGGGATGCCGAAACCGGGAGCGTCGGTGTCGATGAGGATCAATGCGCCGACGACTAAGGCAACGATGCCGCCGATGCCGACCAC‑‑GCCGAAACTGGGCAAGAAGGGTTCGGCGATCATGAAGGTGATGCGaa > 5:76707/1‑149 (MQ=255) tGCCGATCAAGGCCAGGGGGATGCCGAAACCGGGAGCGTCGGTGTCGATCAGGATCAATGCGCCGACCACAAAGGCAACGATGCCGCCGAAGCCGACCAC‑‑GCCGAAACTGGGCAAGAAGGCTTCGGCGATCATGAAGGTGATGCCAAGc < 4:178883/149‑1 (MQ=255) tGCCGATCAAGGCCAGGGGGATGCCGAAACCGGGAGCGTCGGTGTCGATCAGGATCAATGCGCCGACCACAAAGGCAACGATGCCGCCGAAGCCGACCAC‑‑GCCGAAACTGGGCAAGAAGGCTTCGGCGATCATGAAGGTGATGCCAAGc < 5:98972/149‑1 (MQ=255) aGGCCAGGGGGATGCCGAAACCGGGAGCGTCGGTGTCGATCAGGATCAATGCGCCGACCACAAAGGCAACGATGCCGCCGAAGCCGACCAC‑‑GCCGAAACTGGGCAAGAAGGCTTCGGCGATCATGAAGGTGATGCCAAGCAGGATCAgc > 4:37727/1‑149 (MQ=255) aTGCCGAAACCGGGAGCGTCGGTGTCGATCAGGATCAATGCGCCGACCACAAAGGCAACGATGCCGCCGAAGCCGACCAC‑‑GCCGAAACTGGGCAAGAAGGCTTCGGCGATCATGAAGGTGATGCCAAGCAGGATCAGCGCCACCCCgg > 7:59221/1‑148 (MQ=255) gCCGAAACCGGGAGCGTCGGTGTCGATCAGTAGCAATGCGCCGACCACAAAGGCAACTATGCCGCCGAATCCGCCCACCTCCCGAAACTGGGCAAGAAGGCTTCGGCGATCATGAAGGTGATGCCAAGCAGGATCAGCGCCACCCCgg < 1:94963/148‑1 (MQ=255) cGAAACCGGGAGCGTCGGTGTCGATCAGGATCAATGCGCCGACCACAAAGGCAACGATGCCGCCGAAGCCGACCAC‑‑GCCGAAACTGGGCAAGAAGGCTTCGGCGATCATGAAGGTGATGCCAAGCAGGATCAGCGCCACCCCGGCaaaa > 1:200956/1‑149 (MQ=255) aaaCCGGGAGCGTCGGTGTCGATCAGGATCAATGCGCCGACCACAAAGGCAACGATGCCGCCGAAGCCGACCAC‑‑GCCGAAACTGGGCAAGAAGGCTTCGGCGATCATGAAGGTGATGCCAAGCAGGATCAGCGCCACCCCGGCAAAACt > 8:74710/1‑149 (MQ=255) ccGGGAGCGTCGGTGTCGATCAGGATCAATGCGCCGACCACAAAGGCAACGATGCCGCCGAAGCCGACCAC‑‑GCCGAAACTGGGCAAGAAGGCTTCGGCGATCATGAAGGTGATGCCAAGCAGGATCAGCGCCACCCCGGCAAAACTCAc < 8:59221/149‑1 (MQ=255) cGGGAGCGTCGGTGTCGATCAGGATCAATGCGCCGACCACAAAGGCAACGATGCCGCCGACGCCGACCAC‑‑GCCGAAACTGGGCAAGAAGGCTTCGGCGATCATGAAGGTGATGCCAAGCAGGATCAGCGCCACCCCg > 4:247152/1‑137 (MQ=255) gggAGCGTCGGTGTCGATCAGGATCAATGCGCCGACCACAAAGGCAACGATGCCGCCGAAGCCGACCAC‑‑GCCGAAACTGGGCAAGAAGGCTTCGGCGATCATGAAGGTGATGCCAAGCAGGATCAGCGCCACCCCGGCAAAACTCACCg < 2:200956/149‑1 (MQ=255) gCGTCGGTGTCGATCAGGATCAATGCGCCGACCACAAAGGCAACGATGCCGCCGAAGCCGACCAC‑‑GCCGAAACTGGGCAAGAAGGCTTCGGCGATCATGAAGGTGATGCCAAGCAGGATCAGCGCCACCCCGGCAAAACTCACCGGCaa < 3:11606/149‑1 (MQ=255) tCAGGATCAATGCGCCGACCACAAAGGCAACGATGCCGCCGAAGCCGACCAC‑‑GCCGAAACTGGGCAAGAAGGCTTCGGCGATCATGAAGGTGATGCCAAGCAGGATCAGCGCCACCCCGGCAAAACTCACCGGCAACAGCTGCAGCGCa < 7:228888/149‑1 (MQ=255) tggcgctgatcctgcttggcatcaccttcatgatCGCCGAAGCCGACCAC‑‑GCCGAAACTGGGCAAGAAGGCTTCgg > 7:146538‑M1/35‑76 (MQ=255) tggcgctgatcctgcttggcatcaccttcatgatCGCCGAAGCCGACCAC‑‑GCCGAAACTGGGCAAGAAGGCTTCgg < 8:146538‑M1/42‑1 (MQ=255) aGGATCAATGCGCCGACCACAAAGGCAACGATGCCGCCGAAGCCGACCAC‑‑GCCGAAACTGGGCAAGAAGGCTTCGGCGATCATGAAGGTGATGCCAAGCAGGATCAGCGCCACCCCGGCAAAACTCACCGGCAACAGCTGCAGCGCATa < 6:195830/149‑1 (MQ=255) gATCAATGCGCCGACCACAAAGGCAACGATGCCGCCGAAGCCGACCAC‑‑GCCGAAACTGGGCAAGAAGGCTTCGGCGATCATGAAGGTGATGCCAAGCAGGATCAGCGCCACCCCGGCAAAACTCACCGGCAACAGCTGCAGCGCATa > 6:239584/1‑147 (MQ=255) atccgcCGACCACAAAGGCAACGATGCCGCCGAAGCCGCCCAC‑‑GCCGAAACTGGGCAAGAAGGCTTCGGACAACAAGAAGGTGATGCCAAGCAGGATCAGCGCCACCCCGGCAAGACGCACCGGCAACAGCAGCAGCGCATACAgcgc > 4:64453/4‑148 (MQ=255) caAAGGCAACGATGACGCAGAAAACCAACAC‑‑CCCGAAACAGGGCAAGAAGGCATAGGCCATCATGAAGGTGATGCCAAGCATGATAACCCCCAACCCGGCAAAACTCACCGGAAACAGCTGCAGCGCAAACAACCCcacccgcaac > 4:119326/1‑144 (MQ=255) aaaGGCAACGATGCCGCCGAAGCCGACCAC‑‑GCCGAAACTGGGCAAGAAGGCTTCGGCGATCATGAAGGTGATGCCAAGCAGGATCAGCGCCACCCCGGCAAAACTCACCGGCAACAGCTGCAGCGCATACAGCGCCAGCAgcagg > 3:232111/1‑145 (MQ=255) ggCAACGATGCCGCCGAAGCCGACCAC‑‑GCCGAAACTGGGCAAGAAGGCTTCGGCGATCATGAAGGTGATGCCAAGCAGGATCAGCGCCACCCCGGCAAAACTCACCGGCAACAGCTGCAGCGCATACAGCGCCAGCAGCAGGCAGATac < 7:74710/149‑1 (MQ=255) aCGATGCCGCCGAAGCCGACCAC‑‑GCCGAAACTGGGCAAGAAGGCTTCGGCGATCATGAAGGTGATGCCAAGCAGGATCAGCGCCACCCCGGCAAAACTCACCGGCAACAGCTGCAGCGCATACAGCGCCAGCAGCAGGCAGATaccacc < 3:37727/149‑1 (MQ=255) cGATGCCGCCGAAGCCGACCAC‑‑GCCGAAACTGGGCAAGAAGGCTTCGGCGATCATGAAGGTGATGCCAAGCAGGATCAGCGCCACCCCGGCAAAACTCACCGGCAACAGCTGCAGCGCATACAGCGCCAGCAGCAGGCAGATACCACCg > 7:152394/1‑149 (MQ=255) aTGCCGCCGAAGCCGACCAC‑‑GCCGAAACTGGGCAAGAAGGCTTCGGCGATCATGAAGGTGATGCCAAGCAGGATCAGCGCCACCCCGGCAAAACTCACCGGCAACAGCTGCAGCGCATACAGCGCCAGCAGCAGGCAGATACCACCGAc < 4:172581/149‑1 (MQ=255) gccgccGAAGCCGACCAC‑‑GCCGAAACTGGGCAAGAAGGCTTCGGCGATCATGAAGGTGATGCCAAGCAGGATCAGCGCCACCCCGGCAAAACTCACCGGCAACAGCTGCAGCGCATACAGCGCCAGCAGCAGGCAGATACCACCGACca > 3:253397/1‑149 (MQ=255) | GGGCCTTGAGAGCCATGCCCAGCACGCCACCGATCAGGAGTGCCGAGAGCAGCGCCAAGGTGCCGATCAAGGCCAGGGGGATGCCGAAACCGGGAGCGTCGGTGTCGATCAGGATCAATGCGCCGACCACAAAGGCAACGATGCCGCCGAAGCCGACCAC‑‑GCCGAAACTGGGCAAGAAGGCTTCGGCGATCATGAAGGTGATGCCAAGCAGGATCAGCGCCACCCCGGCAAAACTCACCGGCAACAGCTGCAGCGCATACAGCGCCAGCAGCAGGCAGATACCACCGACCA > NC_002947/250083‑250373 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |