New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 526669	7 (0.140)	6 (0.130)	5/256	NT	13.1%	intergenic (+199/‑94)	PP_16SC/PP_23SC	16S ribosomal RNA/23S ribosomal RNA
	?	NC_002947	= 699718	73 (1.530)					intergenic (+111/‑133)	PP_t06/PP_23SD	tRNA‑Ala/23S ribosomal RNA

CATTGTCGAAGACGTTTTTCCTGGTCAGAATCTGGAAATGAGCATTCGCATCGAATGTTGATTTCTGGCTTTTGTCAGATCGTTCTTTAAAAATTCGGATATGTGATAGATATAGACTGAACACCAGTTTCACTGCTGGTGGATCAGGCTA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/526519‑526669 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctaTATCTATCACATATCCGAATTTTTAAAGAACGATCTGACAAAAGCCAGAAATCAACATTCGAGCTGAATGTTCATTTCTAAGTTCTGACAAGTAACTGCGTACGGCGAAAGTGGTGGAGCCAAGCGGGATCGAACCGCTGACCTCCT  <  NC_002947/699718‑699572                                                                                                                                                                                                                                                                                                            CATTGTCGAAGACGTTTTTCCTGGTCAGAATCTGGAAATGAGCATTCGCATCGAATGTTGATTTCTGGCTTTTGTCAGATCGTTCTTTAAAAATTCGGATATGTGATAGATATAGACTGAACACCAGTTTCAATGCTGGTGGATCAGGC                                                                                                                                                       >  4:45269/1‑149  ATTGTCGAAGACGTTTTTCCTGGTCAGAATCTGGAAATGAGCATTCGCATCGAATGTTGATTTCTGGCTTTTGTCAGATCGTTCTTTAAAAATTCGGATATGTGATAGATATAGACTGAACACCAGTTTCACTGCTGGTGGATCAGGCT                                                                                                                                                      <  2:204680/149‑1  ATTGTCGAAGACGTTTTTCCTGGTCAGAATCTGGAAATGAGCATTCGCATCGAATGTTGATTTCTGGCTTTTGTCAGATCGTTCTTTAAAAATTCGGATATGTGATAGATATAGACTGAACACCAGTTTCACTGCTGGTGGATCAGGC                                                                                                                                                       >  5:285541/1‑148   TTGTCGAAGACGTTTTTCCTGGTCAGAATCTGGAAATGAGCATTCGCATCGAATGTTGATTTCTGGCTTTTGTCAGATCGTTCTTTAAAAATTCGGATATGTGATAGATATAGACTGAACACCAGTTTCACTGCTGGTGGATCAGGCT                                                                                                                                                      >  7:31472/1‑148                                                                                                           TAGATATAGGCTGAACACCAGTTTCACTGCTGGTGGATCAGGCTATATCTATCACATATCCGAATTTTTAAAGAACGATCTGACAAAAGCCAGAAATCAACATTCGAGCTGAATGTTCATTTCTAAGTTCTGACAAGTAACTGCGTACG                                             >  3:42450/1‑149                                                                                                                ATAGACTGAACACCAGTTTCACTGCTGGTGGATCAGGCTATATCTATCACATATCCGAATTTTTAAAGAACGATCTGACAAAAGCCAGAAATCAACATTCGAGCTGAATGTTCATTTCTAAGTTCTGACAAGTAACTGCGTACGGCGA                                         >  3:269017/1‑148                                                                                                                 TAGACTGAACACCAGTTTCACTGCTGGTGGATCAGGCTATATCTATCACATATCCGAATTTTTAAAGAACGATCTGACAAAAGCCAGAAATCAACATT                                                                                          >  5:310775/1‑98                                                                                                                 TAGACTGAACACCAGTTTCACTGCTGGTGGATCAGGCTATATCTATCACATATCCGAATTATTAAAGAACGATCTGACAAAAGCCAGAAATCAACATT                                                                                          <  6:310775/98‑1                                                                                                                  aggCTGAACACCAGTTTCACTGCTGGTGGATCAGGCTATATCTATCACATATCCGAATTTTTAAAGAACGATCTGACAAAAGCCAGAAATCAACATTCGAGCTGAATGTTCATTTCTAAGTTCTGACAA                                                          >  7:100767/4‑129                                                                                                                  aggCTGAACACCAGTTTCACTGCTGGTGGATCAGGCTATATCTATCACATATCCGAATTTTTAAAGAACGATCTGACAAAAGCCAGAAATCAACATTCGAGCTGAATGTTCATTTCTAAGTTCTGACAA                                                          <  8:100767/126‑1                                                                                                                                                   gcCTATATCTATCACATATCCGAATTTTTAAAGAACGATCTGACAAAAGCCAGAAATCAACATTCGAGCTGAATGTTCATTTCTAAGTTCTGACAAGTAACTGCGTACGGCGAAAGTG                                    <  5:175158/116‑1                                                                                                                                                   gcCTATATCTATCACATATCCGAATTTTTAAAGAACGATCTGACAAAAGCCAGAAATCAACATTCGAGCTGAATGTTCATTTCTAAGTTCTGACAAGTAACTGCGTACGGCGAAAGTG                                    >  6:175158/3‑118                                                                                                                                                      TATATCTATCACATATCCGAATTTTTAAAGAACGATCTGACAAAAGCCAGAAATCAACATTCGAGCTGAATGTTCATTTCTAAGTTCTGACAAGTAACTGCGTACGGCGAAAGTGGTGGAGCCAAGCGGGATCGAACCGCTGACCTCCT  >  6:166260/1‑149                                                                                                                                                       ATATCTATCACATATCCGAATTTTTAAAGAACGATCTGACAAAAGCCAGAAATCAACATTCGAGCTGAATGTTCATTTCTAAGTTCTGACAAGTAACTGCGTACGGCGAAAGTGGTGGAGCCAAGCGGGATCGAACCGCTGACCTCC   >  5:157071/1‑147                                                                                                                                                       ATATCTATCACATATCCGAATTTTTAAAGAACGATCTGACAAAAGCCAGAAATCAACATTCGAGCTGAATGTTCATTTCTAAGTTCTGACAAGTAACTGCGTACGGCGAAAGTGGTGGAGCCAAGCGGGATCGAACCGCTGACCTCC   <  6:157071/147‑1                                                                                                                                                                                                                                                                                                            CATTGTCGAAGACGTTTTTCCTGGTCAGAATCTGGAAATGAGCATTCGCATCGAATGTTGATTTCTGGCTTTTGTCAGATCGTTCTTTAAAAATTCGGATATGTGATAGATATAGACTGAACACCAGTTTCACTGCTGGTGGATCAGGCTA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/526519‑526669 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctaTATCTATCACATATCCGAATTTTTAAAGAACGATCTGACAAAAGCCAGAAATCAACATTCGAGCTGAATGTTCATTTCTAAGTTCTGACAAGTAACTGCGTACGGCGAAAGTGGTGGAGCCAAGCGGGATCGAACCGCTGACCTCCT  <  NC_002947/699718‑699572

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.