| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 526669 | 7 (0.140) | 6 (0.130) | 5/256 | NT | 13.1% | intergenic (+199/‑94) | PP_16SC/PP_23SC | 16S ribosomal RNA/23S ribosomal RNA |
| ? | NC_002947 | = 699718 | 73 (1.530) | intergenic (+111/‑133) | PP_t06/PP_23SD | tRNA‑Ala/23S ribosomal RNA | |||||
TCGAAGACGTTTTTCCTGGTCAGAATCTGGAAATGAGCATTCGCATCGAATGTTGATTTCTGGCTTTTGTCAGATCGTTCTTTAAAAATTCGGATATGTGATAGATATAGACTGAACACCAGTTTCACTGCTGGTGGATCAGGCTAAGGTAAAATTTGTGAGTTCTGCTCGAAAGAGCAACGTACGAATTTTCGGCGAATGTCGTCTTCACAGTATAACCAGATTGCTTGGGGTTATATGGTCAAGTGAAGAAGCGCATACGGTGGATGCCTTGGCAGTCAGAGGCGATGAAA > NC_002947/526524‑526816 | tCGAAGACGTTTTTCCTGGTCATAATCTTGAAATGATCATTCGCATCGAATGTTGATTTCTGGCTTTTGTCAGATCTTTCTTTAAAAATTCGGATATGTGATAGATATAGACTGAACACCAGTTTCACTGCTGGTTGATCAGGCTAAgg < 2:234703/149‑1 (MQ=11)tCGAAGACGTTTTTCCTGGTCAGAATCTGGAAATGAGCATTCGCATCGAATGTTGATTTCTGGCTTTTGTCAGATCGTTCTTTAAAAATTCGGATATGTGATAGATATAGACTGAACACCAGTTTCACTGCTGGTGGATCAGGCTAAgg > 3:216326/1‑149 (MQ=32) tttCCTGGTCAGAATCTGGAAATGAGCATTCGCATCGAATGTTGATTTCTGGCTTTTGTCAGATCGTTCTTTAAAAATTCGGATATGTGATAGATATAGACTGAACACCAGTTTCACTGCTGGTGGATCAGGCTAAGGTAAAATTtgt < 6:238165/148‑1 (MQ=32) tttCCTGGTCAGAATCTGGAAATGAGCATTCGCATCGAATGTTGATTTCTGGCTTTTGTCAGATCGTTCTTTAAAAATTCGGATATGTGATAGATATAGACTGAACACCAGTTTCACTGCTGGTGGATCAGGCTAAGGTAAAATTtgt < 6:142962/148‑1 (MQ=32) tGGTCAGAATCTGGAAATGAGCATTCGCATCGAATGTTGATTTCTGGCTTTTGTCAGATCGTTCTTTAAAAATTCGGATATGTGATAGATATAGACTGAACACCAGTTTCACTGCTGGTGGATCAGGCTAAGGTAAAATTTGTGAGTTc > 6:76443/1‑149 (MQ=32) gTCAGAATCTGGAAATGAGCATTCGCATCGAATGTTGATTTCTGGCTTTTGTCAGATCGTTCTTTAAAAATTCGGATATGTGATAGATATAGACTGAACACCAGTTTCACTGCTGGTGGATCAGGCTAAGGTAAAATTTGTGAGTTc < 1:129112/147‑1 (MQ=32) gTCAGAATCTGGAAATGAGCATTCGCATCGAATGTTGATTTCTGGCTTTTGTCAGATCGTTCTTTAAAAATTCGGATATGTGATAGATATAGACTGAACACCAGTTTCACTGCTGGTGGATCAGGCTAAGGTAAAATTTGTGAGTTCt < 7:151739/148‑1 (MQ=32) aGAATCTGGAAATGAGCATTCGCATCGAATGTTGATTTCTGGCTTTTGTCAGATCGTTCTTTAAAAATTCGGATATGTGATAGATATAGACTGAACACCAGTTTCACTGCTGGTGGATCAGGCTAAGGTAAAATTTGTGAGTTc < 8:280945/144‑1 (MQ=32) aGAATCTGGAAATGAGCATTCGCATCGAATGTTGATTTCTGGCTTTTGTCAGATCGTTCTTTAAAAATTCGGATATGTGATAGATATAGACTGAACACCAGTTTCACTGCTGGTGGATCAGGCTAAGGTAAAATTTGTGAGTTCtagat > 7:280945/1‑145 (MQ=17) tagataTAGGCTGAACACCAGTTTCACTGCTGGTGGATCAGGCTAtatctatcacatatccgaatttttaaagaacgatctgacaaaagccagaaatcaacattcgagctgaatgttcatttctaagttctgacaagtaactgcgtacg > 3:42450‑M1/1‑45 (MQ=255) ataGACTGAACACCAGTTTCACTGCTGGTGGATCAGGCTAtatctatcacatatccgaatttttaaagaacgatctgacaaaagccagaaatcaacattcgagctgaatgttcatttctaagttctgacaagtaactgcgtacggcga > 3:269017‑M1/1‑40 (MQ=255) taGACTGAACACCAGTTTCACTGCTGGTGGATCAGGCTAtatctatcacatatccgaatttttaaagaacgatctgacaaaagccagaaatcaacatt > 5:310775‑M1/1‑39 (MQ=255) taGACTGAACACCAGTTTCACTGCTGGTGGATCAGGCTAtatctatcacatatccgaattattaaagaacgatctgacaaaagccagaaatcaacatt < 6:310775‑M1/98‑60 (MQ=255) aggctgaACACCAGTTTCACTGCTGGTGGATCAGGCTAtatctatcacatatccgaatttttaaagaacgatctgacaaaagccagaaatcaacattcgagctgaatgttcatttctaagttctgacaa > 7:100767‑M1/4‑38 (MQ=255) aggctgaACACCAGTTTCACTGCTGGTGGATCAGGCTAtatctatcacatatccgaatttttaaagaacgatctgacaaaagccagaaatcaacattcgagctgaatgttcatttctaagttctgacaa < 8:100767‑M1/126‑92 (MQ=255) gcctatatctatcacatatccgaatttttaaagaacgatctgacaaaagccagaaatcaacattcgagctgaatgttcatttctaagttctgacaagtaactgcgtacggcgaaagtg > 6:175158‑M1/3‑5 (MQ=255) gcctatatctatcacatatccgaatttttaaagaacgatctgacaaaagccagaaatcaacattcgagctgaatgttcatttctaagttctgacaagtaactgcgtacggcgaaagtg < 5:175158‑M1/116‑114 (MQ=255) tatatctatcacatatccgaatttttaaagaacgatctgacaaaagccagaaatcaacattcgagctgaatgttcatttctaagttctgacaagtaactgcgtacggcgaaagtggtggagccaagcgggatcgaaccgctgacctcct > 6:166260‑M1/1‑2 (MQ=255) atatctatcacatatccgaatttttaaagaacgatctgacaaaagccagaaatcaacattcgagctgaatgttcatttctaagttctgacaagtaactgcgtacggcgaaagtggtggagccaagcgggatcgaaccgctgacctcc < 6:157071‑M1/147‑147 (MQ=255) atatctatcacatatccgaatttttaaagaacgatctgacaaaagccagaaatcaacattcgagctgaatgttcatttctaagttctgacaagtaactgcgtacggcgaaagtggtggagccaagcgggatcgaaccgctgacctcc > 5:157071‑M1/1‑1 (MQ=255) | TCGAAGACGTTTTTCCTGGTCAGAATCTGGAAATGAGCATTCGCATCGAATGTTGATTTCTGGCTTTTGTCAGATCGTTCTTTAAAAATTCGGATATGTGATAGATATAGACTGAACACCAGTTTCACTGCTGGTGGATCAGGCTAAGGTAAAATTTGTGAGTTCTGCTCGAAAGAGCAACGTACGAATTTTCGGCGAATGTCGTCTTCACAGTATAACCAGATTGCTTGGGGTTATATGGTCAAGTGAAGAAGCGCATACGGTGGATGCCTTGGCAGTCAGAGGCGATGAAA > NC_002947/526524‑526816 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |