New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	1310927 =	51 (1.040)	3 (0.060)	3/250	NT	6.3%	coding (606/2265 nt)	PP_1144	membrane protein
	?	NC_002947	1310961 =	40 (0.860)					coding (572/2265 nt)	PP_1144	membrane protein

CCCGCCAGTACTACCAAACCGGCTTGCTACTTGCCTCTGCCGCCATTGCCCTGCTCACCGCCCTGACCGCGCTGTACCTGGCCCGCTACTTGCGCAATGGCAGCGGTACCCTGTACCAGGCCATGAAGTACGGCGCCAGCCTGCTGATGGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/1311078‑1310927 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atggccTGGTACAGGGTACCGCTGCCATTGCGCAAGTAGCGGGCCAGGTACAGCGCGGTCAGGGCGGTGAGCAGGGCAATGGCGGCAGAGGCAA‑GTAGCAAGCCGGTTTGGTAGTACTGGCGGGCACCCGTTTCCATCGCGGCCATGCC  >  NC_002947/1310961‑1311103                                                                                                                                                                                                                                                                                                          CCCGCCAGTACTACCAAACCGGCTTGCTACTTGCCTCTGCCGCCATTGCCCTGCTCACCGCCCTGACCGCGCTGTACCTGGCCCGCTACTTGCGCAATGGCAGCGGTACCCTGTACCAGGCCATGAAGTACGGCGCCAGCCTGCTGATG                                                                                                                                                     <  1:36044/149‑1  CCGCCAGTACTACCAAACCGGCTTGCTACTTGCCTCTGCCGCCATTGCCCTGCTCACCGCCCTGACCGCGCTGTACCTGGCCCGCTACTTGCGCAATGGCAGCGGTACCCTGTACCAGGCCATGAAGTACGGCGCCAGCCTGCTGATGG                                                                                                                                                    >  4:64348/1‑149                                                                                                                    CCAGGCCATGAAGTACGGCGCCAGCCTGCTGATGGCCTGGTACAGGGTACCGCTGCCATTGCGCAAGTAGCGGGCCAGGTACAGCGCGGTCAGGGCGGTGAGCAGGGCAATGGCGGCAGAGGCAA‑GTAGCAAGCCGGTTTGGTAGTACT                                 >  4:129876/1‑149                                                                                                                      AGGCCATGAAGTACGGCGCCAGCCTGCTGATGGCCTGGTACAGGGTACCGCTGCCATTGCGCAAGTAGCGGGCCAGGTACAGCGCGGTCAGGGCGGTGAGCAGGGCAATGGCGGCAGAGGCAA‑GTAGCAAGCCGGTTTG                                         >  3:87627/1‑139                                                                                                                      AGGCCATGAAGTACGGCGCCAGCCTGCTGATGGCCTGGTACAGGGTACCGCTGCCATTGCGCAAGTAGCGGGCCAGGTACAGCGCGGTCAGGGCGGTGAGCAGGGCAATGGCGGCAGAGGCAA‑GTAGCAAGCCGGTTTG                                         <  4:87627/139‑1                                                                                                                                                   cTGGCCTGGTACAGGGTACCGCTGGCATTGCGCTAGTAGCGGGCCAGGTACAGCGCGGTGAGGGCGGTGAGCAGGGCAATGGCGGCAGAGGCAA‑GTAGCAAGCCGGTTTGGTCGTAGTGGCGGGCACGCGTTTCCATCGCGGCCATGCC  <  4:235520/148‑1                                                                                                                                                   ATGGCCTGGTACAGGGTACCGCTGCCATTGCGCAACTATCGGGGCATGTACACCGCGGTCAGGGCGGTGAGGATGGCAATGGCGGCAGAGGCAATCAAGCAAGCCGGGTTGGTAGTACTGGCGGGCACCCGTTTCCATCGCGGCCATGC   <  1:234946/149‑1                                                                                                                                                        CTGGTACAGGGTACCGCTGCCATTGCGCAAGTAGCGGGCCAGGTACAGCGCGGTCAGGGCGGTGAGCAGGGCAATGGCGGCAGAGGCAA‑GTAGCAAGCCGGTTTGGTAGTACTGGCGGGCACCC                      <  3:3140/124‑1                                                                                                                                                        CTGGTACAGGGTACCGCTGCCATTGCGCAAGTAGCGGGCCAGGTACAGCGCGGTCAGGGCGGTGAGCAGGGCAATGGCGGCAGAGGCAA‑GTAGCAAGCCGGTTTGGTAGTACTGGCGGGCACCC                      >  4:3140/1‑124                                                                                                                                                                                                                                                                                                          CCCGCCAGTACTACCAAACCGGCTTGCTACTTGCCTCTGCCGCCATTGCCCTGCTCACCGCCCTGACCGCGCTGTACCTGGCCCGCTACTTGCGCAATGGCAGCGGTACCCTGTACCAGGCCATGAAGTACGGCGCCAGCCTGCTGATGGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/1311078‑1310927 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atggccTGGTACAGGGTACCGCTGCCATTGCGCAAGTAGCGGGCCAGGTACAGCGCGGTCAGGGCGGTGAGCAGGGCAATGGCGGCAGAGGCAA‑GTAGCAAGCCGGTTTGGTAGTACTGGCGGGCACCCGTTTCCATCGCGGCCATGCC  >  NC_002947/1310961‑1311103

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.