New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	1310927 =	51 (1.040)	3 (0.060)	3/250	NT	6.3%	coding (606/2265 nt)	PP_1144	membrane protein
	?	NC_002947	1310961 =	40 (0.860)					coding (572/2265 nt)	PP_1144	membrane protein

CCCAGTCCCAGTTGCAGGCTGTTGTCGCCCGACGGCAGGCGCAGTGCGGTATCGGCAGGGATGACCAAGGTCATGGCCGACATCGCGGTGAAATGAGTGGCGACGAT‑GCCGCCGGCCATCAGCAGGCTGGCGCCGTACTTCATGGCCTGGTACAGGGTACCGCTGCCATTGCGCAAGTAGCGGGCCAGGTACAGCGCGGTCAGGGCGGTGAGCAGGGCAATGGCGGCAGAGGCAA‑GTAGCAAGCCGGTTTGGTAGTACTGGCGGGCACCCGTTTCCATCGCGGCCATGCC  >  NC_002947/1310814‑1311103                                                                                                                                                     |                                                                                                                                                cccagtcccagtTGCAGGCTGTTGTCGCCCGACGGCAGGCGCAGTGCGGTATCGGCAGGGATGACCAAGGTCATGGCCGACATCGCGGTGAAATGAGTGGCGACGAT‑GCCGCCGGCCATCAGCAGGCTGGCGCCGTACTTCATGGCCTg                                                                                                                                                <  3:134244/149‑1 (MQ=255)  ccagtcccagtTGCAGGCTGTTGTCGCCCGACGGCAGGCGCAGTGCGGTATCGGCAGGGATGACCAAGGTCATGGCCGACATCGCGGTGAAATGAGTGGCGACGATCGCCGCCGGCCATCAGCAGGCTGGCGCCGTACTTCATGGCCTg                                                                                                                                                <  1:58767/149‑1 (MQ=255)  ccagtcccagtTGCAGGCTGTTGTCGCCCGACGGCAGGCGCAGTGCGGTATCGGCAGGGATGACCAAGGTCATGGCCGACATCGCGGTGAAATGAGTGGCGACGAT‑GCCGCCGGCCATCAGCAGGCTGGCGCCGTACTTCATGGCCTgg                                                                                                                                               >  3:198125/1‑149 (MQ=255)  ccagtcccagtTGCAGGCTGTTGTCGCCCGACGGCAGGCGCAGTGCGGTATCGGCAGGGATGACCAAGGTCATGGCCGACATCGCGGTGAAATGAGTGGCGACGAT‑GCCGCCGGCCATCAGCAGGCTGGCGCCGTACTTCATGGCCTgg                                                                                                                                               >  1:262904/1‑149 (MQ=255)  ccagtcccagtTGCAGGCTGTTGTCGCCCGACGGCAGGCGCAGTGCGGTATCGGCAGGGATGACCAAGGTCATGGCCGACATCGCGGTGAAATGAGTGGCGACGAT‑GCCGCCGGCCATCAGCAGGCTGGCGCCGTACTTCATGGCCTgg                                                                                                                                               <  2:262904/149‑1 (MQ=255)   agtactaccaaaccggcttgctacttgcctctgccgccattgccctgctcaccgccctgaccgcgctgtacctggcccgctacttgcgcaatggcagcggtaccctgtaccaGGCCATCAGCAGGCTGGCGCCGTACTTCATGGCCTgg                                                                                                                                               >  4:129876‑M1/113‑149 (MQ=255)        ccagtTGCAGGCTGTTGTCGCCCGACGGCAGGCGCAGTGCGGTATCGGCAGGGATGACCAAGGTCATGGCCGACATCGCGGTGAAATGAGTGGCGACGAT‑GCCGCCGGCCATCAGCAGGCTGGCGCCGTACTTCATGGCCTGGTACAgg                                                                                                                                         >  2:53241/1‑149 (MQ=255)        ccagtTGCAGGCTGTTGTCGCCCGACGGCAGGCGCAGTGCGGTATCGGCAGGGATGACCAAGGTCATGGCCGACATCGCGGTGAAATGAGTGGCGACGAT‑GCCGCCGGCCATCAGCAGGCTGGCGCCGTACTTCATGGCCTGGTACAg                                                                                                                                          <  5:245359/148‑1 (MQ=255)         cagtTGCAGGCTGTTGTCGCCCGACGGCAGGCGCAGTGCGGTATCGGCAGGTATGACCAAGGTCATGGCCGACATCGCGGTGAAATGAGTGGCGACGAT‑GCCGCCGGCCATCAGCAGGCTGGCGCCGTACTTCATGGCCTGGTACAggg                                                                                                                                        <  7:131145/149‑1 (MQ=255)           gtTGCAGGCTGTTGTCGCCCGACGGCAGGCGCAGTGCGGTATCGGCAGGGATGACCAAGGTCATGGCCGACATCGCGGTGAAATGAGTGGCGACGAT‑GCCGCCGGCCATCAGCAGGCTGGCGCCGTACTTCATGGCCTGGTACAGGGTa                                                                                                                                      <  4:126646/149‑1 (MQ=255)           caaaccggcttgctacttgcctctgccgccattgccctgctcaccgccctgaccgcgctgtacctggcccgctacttgcgcaatggcagcggtaccctgtaccaGGCCATCAGCAGGCTGGCGCCGTACTTCATGGCCt                                                                                                                                                 >  3:87627‑M1/105‑139 (MQ=255)           caaaccggcttgctacttgcctctgccgccattgccctgctcaccgccctgaccgcgctgtacctggcccgctacttgcgcaatggcagcggtaccctgtaccaGGCCATCAGCAGGCTGGCGCCGTACTTCATGGCCt                                                                                                                                                 <  4:87627‑M1/35‑1 (MQ=255)              gCAGGCTGTTGTCGCCCGACGGCAGGCGCAGTGCGGTATCGGCAGGGATGACCAAGGTCATGGCCGACATCGCGGTGAAATGAGTGGCGACGAT‑GCCGCCGGCCATCAGCAGGCTGGCGCCGTACTTCATGGCCTGGTACAGGGTACCg                                                                                                                                   >  2:68054/1‑149 (MQ=255)               cAGGCTGTTGTCGCCCGACGGCAGGCGCAGTGCGGTATCGGCAGGGATGACCAAGGTCATGGCCGACATCGCGGTGAAATGAGTGGCGACGAT‑GCCGCCGGCCATCAGCAGGCTGGCGCCGTACTTCATGGCCTGGTACAGGGTACCg                                                                                                                                   <  1:53241/148‑1 (MQ=255)                aGGCTGTTGTCGCCCGACGGCAGGCGCAGTGCGGTATCGGCAGGGATGACCAAGGTCATGGCCGACATCGCGGTGAAATGAGTGGCGACGAT‑GCCGCCGGCCATCAGCAGGCTGGCGCCGTACTTCATGGCCTGGTACAGGGTACCGCt                                                                                                                                 >  3:216147/1‑149 (MQ=255)                 ggCTGTTGTCGCCCGACGGCAGGCGCAGTGCGGTATCGGCAGGGATGACCAAGGTCATGGCCGACATCGCGGTGAAATGAGTGGCGACGAT‑GCCGCCGGCCATCAGCAGGCTGGCGCCGTACTTCATGGCCTGGTACAGGGTACCGCTg                                                                                                                                <  4:100272/149‑1 (MQ=255)                         tCGCCCGACGGCAGGCGCAGTGCGGTATCGGCAGGGATGACCAAGGTCATGGCCGACATCGCGGTGAAATGAGTGGCGACGAT‑GCCGCCGGCCATCAGCAGGCTGGCGCCGTACTTCATGGCCTGGTACAGGGTACCGCTGCCATTgc                                                                                                                         <  2:294777/148‑1 (MQ=255)                                 cGGCAGGCGCAGTGCGGTATCGGCAGGGATGACCAAGGTCATGGCCGACATCGCGGTGAAATGAGTGGCGACGAT‑GCCGCCGGCCATCAGCAGGCTGGCGCCGTACTTCATGGCCTGGTACAGGGTACCGCTGCCATTGCGCAAGTAGc                                                                                                                <  7:40355/149‑1 (MQ=255)                                  ggCAGGCGCAGTGCGGTATCGGCAGGGATGACCAAGGTCATGGCCGACATCGCGGTGAAATGAGTGGCGACGAT‑GCCGCCGGCCATCAGCAGGCTGGCGCCGTACTTCATGGCCTGGTACAGGGTACCGCTGCCATTGCGCAAGTAGCg                                                                                                               <  4:198125/149‑1 (MQ=255)                                   gCAGGCGCAGTGCGGTATCGGCAGGGATGACCAAGGTCATGGCCGACATCGCGGTGAAATGAGTGGCGACGAT‑GCCGCCGGCCATCAGCAGGCTGGCGCCGTACTTCATGGCCTGGTACAGGGTACCGCTGCCATTGCGCAAGTAGCgg                                                                                                              >  1:172277/1‑149 (MQ=255)                                         gcAGTGCGGTATCGGCAGGGATGACCAAGGTCATGGCCGACATCGCGGTGAAATGAGTGGCGACGAT‑GCCGCCGGCCATCAGCAGGCTGGCGCCGTACTTCATGGCCTGGTACAGGGTACCGCTGCCATTGCGCAAGTAGCGGGCCAgg                                                                                                        >  2:118524/1‑149 (MQ=255)                                                       gCAGGGATGACCAAGGTCATGGCCGACATCGCGGTGAAATGAGTGGCGACGAT‑GCCGCCGGCCATCAGCAGGCTGGCGCCGTACTTCATGGCCTGGTACAGGGTACCGCTGCCATTGCGCAAGTAGCGGGCCAGGTACAGCGCGGTCAg                                                                                          >  2:12222/1‑149 (MQ=255)                                                         aGGGATGACCAACGTCATGGCCGACATCGCGGTGAAATGAGTGGCGACGAT‑GCCGCCGGCCATCAGCAGGCTGGCGCCGTACTTCATGGCCTGGTACAGGGTACCGCTGCCATTGCGCAAGTAGCGGGCCAGGTACAGCGCGGTCAggg                                                                                        <  1:118524/149‑1 (MQ=255)                                                            gATGACCAAGGTCATGGCCGACATCGCGGTGAAATGAGTGGCGACGAT‑GCCGCCGGCCATCAGCAGGCTGGCGCCGTACTTCATGGCCTGGTACAGGGTACCGCTGCCATTGCGCAAGTAGCGGGCCAGGTACAGCGCGGTCAGGGCgg                                                                                     >  3:64348/1‑149 (MQ=255)                                                             aTGACCAAGGTCATGGCCGACATCGCGGTGAAATGAGTGGCGACGAT‑GCCGCCGGCCATCAGCAGGCTGGCGCCGTACTTCATGGCCTGGTACAGGGTACCGCTGCCATTGCGCAAGTAGCGGGCCAGGTACa                                                                                                    >  7:209129/1‑133 (MQ=255)                                                             aTGACCAAGGTCATGGCCGACATCGCGGTGAAATGAGTGGCGACGAT‑GCCGCCGGCCATCAGCAGGCTGGCGCCGTACTTCATGGCCTGGTACAGGGTACCGCTGCCATTGCGCAAGTAGCGGGCCAGGTACa                                                                                                    <  8:209129/133‑1 (MQ=255)                                                                aCCAAGGGCATGGCCGACATCGCGGTGAAATCAGGGGCGACGAT‑GCCGCCGGCCATCAGCAGGCTGGCGCCGTACTTCATGGCCTGGTACAGGGTACCGCTGCCATTGCGCAAGTAGCGGGCCAGGTACAGCGCGGTCAGGGCGGTGa                                                                                  <  7:192767/148‑1 (MQ=255)                                                                 ccAAGGTCATGGCCGACATCGCGGTGAAATGAGTGGCGACGAT‑GCCGCCGGCCATCAGCAGGCTGGCGCCGTACTTCATGGCCTGGTACAGGGTACCGCTGCCATTGCGCAAGTAGCGGGCCAGGTACAGCGCGGTCAGGGCGGTGAg                                                                                 >  4:88088/1‑148 (MQ=255)                                                                  cAAGGTCATGGCCGACATCGCGGTGAAATGAGTGGCGACGAT‑GCCGCCGGCCATCAGCAGGCTGGCGCCGTACTTCATGGCCTGGTACAGGGTACCGCTGCCATTGCGCAAGTAGCGGGCCAGGTACAGCGCGGTCAGGGCGGTGAg                                                                                 >  1:131020/1‑147 (MQ=255)                                                                    aGGTCATGGCCGACATCGCGGTGAAATGAGTGGCGACGAT‑GCCGCCGGCCATCAGCAGGCTGGCGCCGTACTTCATGGCCTGGTACAGGGTACCGCTGCCATTGCGCAAGTAGCGGGCCAGGTACAGCGCGGTCAGGGCGGTGAGCAgg                                                                             >  8:45766/1‑149 (MQ=255)                                                                         aTGGCCGACATCGCGGTGAAATGAGTGGCGACGAT‑GCCGCCGGCCATCAGCAGGCTGGCGCCGTACTTCATGGCCTGGTACAGGGTACCGCTGCCATTGCGCAAGTAGCgg                                                                                                              >  2:251624/1‑111 (MQ=255)                                                                         aTGGCCGACATCGCGGTGAAATGAGTGGCGACGAT‑GCCGCCGGCCATCAGCAGGCTGGCGCCGTACTTCATGGCCTGGTACAGGGTACCGCTGCCATTGCGCAAGTAGCGGGCCAGGTACAGCGCGGTCAGGGCGGTGAGCAGGGCAAt                                                                        >  5:215571/1‑149 (MQ=255)                                                                         aTGGCCGACATCGCGCTGAAATGAGTGGCGACGAT‑GCCGCCGGCCATCAGCAGGCTGGCGCCGTACTTCATGGCCTGGTACAGGGTACCGCTGCCATTGCGCAAGTAGCgg                                                                                                              <  1:251624/111‑1 (MQ=255)                                                                                   tCGCGGTGAAATGAGTGGCGACGAT‑GCCGCCGGCCATCAGCAGGCTGGCGCCGTACTTCATGGCCTGGTACAGGGTACCGCTGCCATTGCGCAAGTAGCGGGCCAGGTACAGCGCGGTCAGGGCGGTGAGCAGGGCAATGTCGGCagag                                                              <  8:177700/149‑1 (MQ=255)                                                                                     gcgGTGAAATGAGTGGCGACGAT‑GCCGCCGGCCATCAGCAGGCTGGCGCCGTACTTCATGGCCTGGTACAGGGTACCGCTGCCATTGCGCAAGTAGCGGGCCAGGTACAGCGCGGGCAGGGCGGTGAGCAGGGCAATGGCGGCAGAgg                                                             <  4:216147/148‑1 (MQ=255)                                                                                      cgGTGAAATGAGTGGCGACGAT‑GCCGCCGGCCATCAGCAGGCTGGCGCCGTACTTCATGGCCTGGTACAGGGTACCGCTGCCATTGCGCAAGTAGCGGGCCAGGTACAGCGCGGTCAGGGCGGTGAGCAGGGCAATGGCGGCAGAGGc                                                            >  1:120421/1‑148 (MQ=255)                                                                                               gAGTGGCGACGAT‑GCCGCCGGCCATCAGCAGGCTGGCGCCGTACTTCATGGCCTGGTACAGGGTACCGCTGCCATTGCGCAAGTAGCGGGCCAGGTACAGCGCGGTCAGGGCGGTGAGCAGGGCAATGGCGGCAGAGGCAA‑GTAGCAAg                                                 >  3:235520/1‑149 (MQ=255)                                                                                                aGTGGCGACGAT‑GCCGCCGGCCATCAGCAGGCTGGCGCCGTACTTCATGGCCTGGTACAGGGTACCGCTGCCATTGCGCAAGTAGCGGGCCAGGTACAGCGCGGTCAGGGCGGTGAGCAGGGCAATGGCGGCAGAGGCAA‑GTAGCAAg                                                 <  2:131020/148‑1 (MQ=255)                                                                                                    gCGACGAT‑GCCGCCGGCCATCAGCAGGCTGGCGCCGTACTTCATGGCCTGGTACAGGGTACCGCTGCCATTGCGCAAGTAGCGGGCCAGGTACAGCGCGGTCAGGGCGGTGAGCAGGGCAATGGCGGCAGAGGCAA‑GTAGc                                                    >  5:220527/1‑141 (MQ=255)                                                                                                    gCGACGAT‑GCCGCCGGACATCAGCAGGCTTGCTCCGTACTTCATGGCCTGGTACAGGGTACCGCTGCCATTGCGCAAGTAGCGGGCCAGGTACAGCGCGGTCAGGGCGGTGAGCAGGGCAATGGCGGCAGAGGCAA‑GTAGc                                                    <  6:220527/141‑1 (MQ=255)                                                                                                      gacgaT‑GCCGCCGGCCATCAGCAGGCTGGCGCCGTACTTCATGGCCTGGTACAGGGTACCGCTGCCATTGCGCAAGTAGCGGGCCAGGTACAGCGCGGTCAGGGCGGTGAGCAGGGCAATGGCGGCAGAGGCAA‑GTAGCAAGCCGGttt                                          <  6:215571/149‑1 (MQ=255)                                                                                                      gacgaT‑GCCGCCGGCCATCAGCAGGCTGGCGCCGTACTTCATCGCCTGGTACAGGGTACCGCTGCCATTCCGCAAGTAGCGGGCCAGGTACAGCCCGGTCAGGGCGCTGAGCAGGGCAATCGCCCCAGAGGCAA‑GTa                                                      >  4:136127/1‑137 (MQ=255)                                                                                                           t‑GCCGCCGGCCATCAGCAGGCTGGCGCCGTACTTCATGGCCTGGTACAGGGTACCGCTGCCATTGCGCAAGTAGCGGGCCAGGTACAGCGCGGTCAGGGCGGTGAGCAGGGCAATGGCGGCAGAGGCAA‑GTAGCAAGCCGGTTTGgtag                                     >  2:234946/1‑149 (MQ=255)                                                                                                                ccaggccatgaagtacggcgccagcctgctgatggccTGGTACAGGGTACCGCTGCCATTGCGCAAGTAGCGGGCCAGGTACAGCGCGGTCAGGGCGGTGAGCAGGGCAATGGCGGCAGAGGCAA‑GTAGCAAGCCGGTTTGGTAGTACt                                 >  4:129876‑M2/38‑149 (MQ=255)                                                                                                                  aggccatgaagtacggcgccagcctgctgatggccTGGTACAGGGTACCGCTGCCATTGCGCAAGTAGCGGGCCAGGTACAGCGCGGTCAGGGCGGTGAGCAGGGCAATGGCGGCAGAGGCAA‑GTAGCAAGCCGGTTTg                                         <  4:87627‑M2/104‑1 (MQ=255)                                                                                                                  aggccatgaagtacggcgccagcctgctgatggccTGGTACAGGGTACCGCTGCCATTGCGCAAGTAGCGGGCCAGGTACAGCGCGGTCAGGGCGGTGAGCAGGGCAATGGCGGCAGAGGCAA‑GTAGCAAGCCGGTTTg                                         >  3:87627‑M2/36‑139 (MQ=255)                                                                                                                     CCATCAGCAGGCTGGCGCCGTACTTCATGGCCTGGTACAGGGTACCGCTGCCATTGCGCAAGTAGCGGGCCAGGTACAGCGCGGTCAGGGCGGTGAGCAGGGCAATGGCGGCAGAGGCAA‑GTAGCAAGCCGGTTTGGTAGTACTGGCgg                            >  4:64348‑M1/1‑149 (MQ=255)                                                                                                                      CATCAGCAGGCTGGCGCCGTACTTCATGGCCTGGTACAGGGTACCGCTGCCATTGCGCAAGTAGCGGGCCAGGTACAGCGCGGTCAGGGCGGTGAGCAGGGCAATGGCGGCAGAGGCAA‑GTAGCAAGCCGGTTTGGTAGTACTGGCggg                           <  1:36044‑M1/149‑1 (MQ=255)                                                                                                                                     gcCGTACTTCATGGCCTGGTACAGGGTACCGCTGCCATTGCGCAAGTAGCGGGCCAGGTACAGCGCGGTCAGGGCGGTGAGCAGGGCAATGGCGGCAGAGGCAA‑GTAGCAAGCCGGTTTGGTAGTACTGGCgg                            >  5:196372/1‑133 (MQ=255)                                                                                                                                     gcCGTACTTCATGGCCTGGTACAGGGTACCGCTGCCATTGCGCAAGTAGCGGGCCAGGTACAGCGCGGTCAGGGCGGTGAGCAGGGCAATGGCGGCAGAGGCAA‑GTAGCAAGCCGGTTTGGTAGTACTGGCgg                            <  6:196372/133‑1 (MQ=255)                                                                                                                                     gcCGTACTTCATGGCCTGGTACAGGGTACCGCTGCCATTGCGCAAGTAGCGGGCCAGGTACAGCGCGGTCAGGGCGGTGAGCAGGGCAATGGCGGCAGAGGCAA‑GTAGCAAGCCGGTTTGGTAGTACTGGCGGGCACCCGTTTCCATcg            >  4:7901/1‑149 (MQ=255)                                                                                                                                      ccGTACTTCATGGCCTGGTACAGGGTACCGCTGCCATTGCGCAAGTAGCGGGCCAGGTACAGCGCGGTCAGGGCGGTGAGCAGGGCAATGG‑TGCAGAGGCAA‑GTAGCAAGCCGGTTTGGTAGTACTGGCGGGCACCCGTTTCCATcgcg          >  4:20373/1‑149 (MQ=255)                                                                                                                                        gTACTTCATGGCCTGGTACAGGGTACCGCTGCCATTGCGCAAGTAGCGGGCCAGGTACAGCGCGGTCAGGGCGGTGAGCAGGGCAATGGCGGCAGAGGCAA‑GTAGCAAGCCGGTTTGGTAGTACTGGCGGGCACCCGTTTCCATCGCgg         <  2:172277/149‑1 (MQ=255)                                                                                                                                              cATGGCCTGGTACAGGGTACCGCTGCCATTGCGCAAGTAGCGGGCCAGGTACAGCGCGGTCAGGGCGGTGAGCAGGGCAATGGCGGCAGAGGCAA‑GTAGCTAGCCGGTTTGGTAGTACTGGCGGGCACCCGTTTCCATCGCGGCCATg    <  1:68054/148‑1 (MQ=255)                                                                                                                                               ctggccTGGTACAGGGTACCGCTGGCATTGCGCTAGTAGCGGGCCAGGTACAGCGCGGTGAGGGCGGTGAGCAGGGCAATGGCGGCAGAGGCAA‑GTAGCAAGCCGGTTTGGTCGTAGTGGCGGGCACGCGTTTCCATCGCGGCCATGcc  <  4:235520‑M2/143‑1 (MQ=255)                                                                                                                                               atggccTGGTACAGGGTACCGCTGCCATTGCGCAACTATCGGGGCATGTACACCGCGGTCAGGGCGGTGAGGATGGCAATGGCGGCAGAGGCAATCAAGCAAGCCGGGTTGGTAGTACTGGCGGGCACCCGTTTCCATCGCGGCCATGc   <  1:234946‑M2/143‑1 (MQ=255)                                                                                                                                                    cTGGTACAGGGTACCGCTGCCATTGCGCAAGTAGCGGGCCAGGTACAGCGCGGTCAGGGCGGTGAGCAGGGCAATGGCGGCAGAGGCAA‑GTAGCAAGCCGGTTTGGTAGTACTGGCGGGCAccc                      >  4:3140‑M2/2‑124 (MQ=255)                                                                                                                                                    cTGGTACAGGGTACCGCTGCCATTGCGCAAGTAGCGGGCCAGGTACAGCGCGGTCAGGGCGGTGAGCAGGGCAATGGCGGCAGAGGCAA‑GTAGCAAGCCGGTTTGGTAGTACTGGCGGGCAccc                      <  3:3140‑M2/123‑1 (MQ=255)                                                                                                                                                     |                                                                                                                                                CCCAGTCCCAGTTGCAGGCTGTTGTCGCCCGACGGCAGGCGCAGTGCGGTATCGGCAGGGATGACCAAGGTCATGGCCGACATCGCGGTGAAATGAGTGGCGACGAT‑GCCGCCGGCCATCAGCAGGCTGGCGCCGTACTTCATGGCCTGGTACAGGGTACCGCTGCCATTGCGCAAGTAGCGGGCCAGGTACAGCGCGGTCAGGGCGGTGAGCAGGGCAATGGCGGCAGAGGCAA‑GTAGCAAGCCGGTTTGGTAGTACTGGCGGGCACCCGTTTCCATCGCGGCCATGCC  >  NC_002947/1310814‑1311103

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.