New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 1356460	53 (1.080)	3 (0.070)	3/244	NT	5.7%	coding (336/699 nt)	PP_1181	two‑component system response regulator
	?	NC_002947	= 1356504	50 (1.100)					coding (380/699 nt)	PP_1181	two‑component system response regulator

AGGACGGCCTGAGCATCTGCCGCCGGGTGCGCAGCCAGTACCAGGGGCCGATCCTCATGCTCACCGCGCGCAGTGATGAACTGGACCAGGTCCAGGGCCTGGACCTGGGCGCCGACGACTACGTCTGCAAACCCGTGCGCCCACGCTTGCTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/1356309‑1356460 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgcttgctgTCCACGGTTTCGCTGCGGCGCAGCAGGGCCTGGATACGTGCCAGCAGCAAGCGTGGGCGCACGGGTTTGCAGACGTAGTCGTCGGCGCCCAGGTCCAGGCCCTGGACCTGGTCCAGTTCATCACTGCGCGCGGTGAGCATGAGGA  <  NC_002947/1356504‑1356360                                                                                                                                                                                                                                                                                                           AGGACGGCGATAGCATCTGCCGCGGGGTGCGCAGCCAGTACCCGGGGCCGCTCCTCATGCTCACCGCGCGCAGTGATGACCTGGACCAGGTCCAGGGCCTGGACCTGGGCGCCGACGACTACGTCTGCAAACCCGTGCGCCCACGCTTG                                                                                                                                                      <  8:218583/149‑1  GGACGGCCTGAGCATCTGCCGCCGGGTGCGCAGCCAGTACCAGGGGCCGATCCTCATGCTCACCGCGCGCAGTGATGAACTGGACCAGGTCCAGGGCCTGGACCTGGGCGCCGACGACTACGTCTGCAAACCCGTGCGCCCACGCTT                                                                                                                                                       <  8:280214/147‑1       GCCTGAGCATCTGCCGCCGGGTGCGCAGCCAGTACCAGGGGCCGATCCTCATGCTCACCGCGCGCAGTGATGAACTGGACCAGGTCCAGGGCCTGGACCTGGGCGCCGACGACTACGTCTGCAAACCCGTGCGCCCACGCTTGCTGTC                                                                                                                                                 >  4:228683/1‑148                                   CCAGTACCAGGGGCCGATCCTCATGCTCACCGCGCGCAGTGATGAACTGGACCAGGTCCAGGGCCTGGACCTGGGCGCCGACGACTACGTCTGCAAACCCGTGCGCCCACGCTTG                                                                                                                                                      >  4:174942/1‑115                                                            CTCACCGCGCGCAGTGATGAACTGGACCAGGTCCAGGGCCTGGACCTGGGCGCCGACGACTACGTCTGCAAACCCGTGCGCCCACGCTTGCTGTCCACGGTTTCGCTGCGGCGCAGCAGGGCCTGGATACGTGCCAGCAGCAAGCGTG                                                                                            <  3:228683/148‑1                                                                CCGCGCGCAGTGATGAACTGGACCAGGTCCAGGGCCTGGACCTGGGCGCCGACGACTACGTCTGCAAACCCGTGCGCCCACGCTTGCTGTCCACGGTTTCGCTGCGGCGCAGCAGGGCCTGGATACGTGCCAGCAGCAAGCGTGG                                                                                           >  7:89741/1‑145                                                                CCGCGCGCAGTGATGAACTGGACCAGGTCCAGGGCCTGGACCTGGGCGCCGACGACTACGTCTGCAAACCCGTGCGCCCACGCTTGCTGTCCACGGTTTCGCTGCGGCGCAGCAGGGCCTGGATACGTGCCAGCAGCAAGCGTGG                                                                                           <  8:89741/145‑1                                                                                                                                                 GCTTGCTGTCCACGGTTTCGCTGCGGCGCAGCAGGGCCTGGATACGTGCCAGCAGCAAGCGTGGGCGCACGGGTTTGCAGACGTAGTCGTCGGCGCCCAGGTCCAGGCCCTGGACCTGGTCCAGTTCATCACTGCGCGCGGTGAGCATG      <  1:237126/149‑1                                                                                                                                                 GCTTGCTGTCCACGGTTTCGCTGCGGCGCAGCAGGGCCTGGATACGTGCCAGCAGCAAGCGTGGGCGCACGGGTTTGCAGACGTAGTCGTCGGCGCCCAGGTCCAGGCCCTGGACCTGGTCCAGTTCATCACTGCGCGCGGTGAGCAT       >  7:273403/1‑148                                                                                                                                                     GCTGTCCACGGTTTCGCTGCGGCGCAGCAGGGCCTGGATACGTGCCAGCAGCAAGCGTGGGCGCACGGGTTTGCAGACGTAGTCGTCGGCGCCCAGGTCCAGGCCCTGGACCTGGTCCAGTTCATCACTGCGCGCGGTGAGCATGAGGA  >  6:300279/1‑149                                                                                                                                                                                                                                                                                                           AGGACGGCCTGAGCATCTGCCGCCGGGTGCGCAGCCAGTACCAGGGGCCGATCCTCATGCTCACCGCGCGCAGTGATGAACTGGACCAGGTCCAGGGCCTGGACCTGGGCGCCGACGACTACGTCTGCAAACCCGTGCGCCCACGCTTGCTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/1356309‑1356460 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgcttgctgTCCACGGTTTCGCTGCGGCGCAGCAGGGCCTGGATACGTGCCAGCAGCAAGCGTGGGCGCACGGGTTTGCAGACGTAGTCGTCGGCGCCCAGGTCCAGGCCCTGGACCTGGTCCAGTTCATCACTGCGCGCGGTGAGCATGAGGA  <  NC_002947/1356504‑1356360

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.