New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | = 1356460 | 53 (1.080) | 3 (0.070) | 3/244 | NT | 5.7% | coding (336/699 nt) | PP_1181 | two‑component system response regulator |
? | NC_002947 | = 1356504 | 50 (1.100) | coding (380/699 nt) | PP_1181 | two‑component system response regulator |
TCCTCATGCTCACCGCGCGCAGTGATGAACTGGACCAGGTCCAGGGCCTGGACCTGGGCGCCGACGACTACGTCTGCAAACCCGTGCGCCCACGCTTGCTGCTGGCACGTATCCAGGCCCTGCTGCGCCGCAGCGAAACCGTGGACAGCAAGCGCCAGGACCTGGCCTTCGGTGCGCTGCGTATCGACAACCGCCTGCGTGAGGCGCGCCTGGGCGAGCAGTTGATCGAGCTGACCGGCGCCGAATTCGACCTGCTCTGGCTGTTGGCCAGCAACGCTGGCCGCGTGCTGACC > NC_002947/1356360‑1356652 | tCCTCATGCTCACCGCGCGCAGTGATGAACTGGACCAGGTCCAGGGCCTGGACCTGGGCGCCGACGACTACGTCTGCAAACCCGTGCGCCCACGCTTGCTGCTGGCACGTATCCAGGCCCTGCTGCGCCGCAGCGAAACCGTGGAcagc > 6:300279‑M2/1‑145 (MQ=255) cATGCTCACCGCGCGCAGTGATGAACTGGACCAGGTCCAGGGCCTGGACCTGGGCGCCGACGACTACGTCTGCAAACCCGTGCGCCCACGCTTGCTGCTGGCACGTATCCAGGCCCTGCTGCGCCGCAGCGAAACCGTGGAcagcaagc < 1:237126‑M2/149‑9 (MQ=255) aTGCTCACCGCGCGCAGTGATGAACTGGACCAGGTCCAGGGCCTGGACCTGGGCGCCGACGACTACGTCTGCAAACCCGTGCGCCCACGCTTGCTGCTGGCACGTATCCAGGCCCTGCTGCGCCGCAGCGAAACCGTGGAcagcaagc > 7:273403‑M2/1‑140 (MQ=255) tGCTCACCGCGCGCAGTGATGAACTGGACCAGGTCCAGGGCCTGGACCTGGGCGCCGACGACTACGTCTGCAAACCCGTGCGCCCACGCTTGCTGCTGGCACGTATCCAGGCCCTGCTGCGCCGCAGCGAAACCGTGGACAGCAAgcgc < 2:237126/149‑1 (MQ=255) gCTCACCGCGCGCAGTGATGAACTGGACCAGGTCCAGGGCCTGGACCTGGGCGCCGACGACTACGTCTGCAAACCCGTGCGCCCACGCTTGCTGCTGGCCCGTATCCAGGCCCTGCTGCGCCGCAGCGAAACCGTGGACAGCAAgcgc > 7:181179/1‑148 (MQ=255) gcgcAGTGATGAACTGGACCAGGTCCAGGGCCTGGACCTGGGCGCCGACGACTACGTCTGCAAACCCGTGCGCCCACGCTTGCTGCTGGCACGTATCCAGGCCCTGCTGCGCCGCAGCGAAACCGTGGACAGCAAGCGCCAGGACCTgg < 2:298572/149‑1 (MQ=255) aGTGATGAACTGGACCAGGTCCAGGGCCTGGACCTGGGCGCCGACGACTACGTCTGCAAACCCGTGCGCCCACGCTTGCTGCTGGCACGTATCCAGGCCCTGCTGCGCCGCAGCGAAACCGTGGACAGCAAGCGCCAGGACCTGGCCtt < 8:86912/149‑1 (MQ=255) aCTGGACCAGGTCCAGGGCCTGGACCTGGGCGCCGACGACTACGTCTGCAAACCCGTGCGCCCACGCTTGCTGCTGGCACGTATCCAGGCCCTGCTGCGCCGCAGCGAAACCGTGGACAGCAAGCGCCAGGACCTGGCCTTCGGTgcgc > 6:15044/1‑149 (MQ=255) aCTGGACCAGGTCCAGGGCCTGGACCTGGGCGCCGACGACTACGTCTGCAAACCCGTGCGCCCACGCTTGCTGCTGGCACGTATCCAGGCCCTGCTGCGCCGCAGCGAAACCGTGGACAGCAAGCGCCAGGACCTGGCCTTCGGTgcgc > 2:31837/1‑149 (MQ=255) cTGGACCAGGTCCAGGGCCTGGACCTGGGCGCCGACGACTACGTCTGCAAACCCGTGCGCCCACGCTTGCTGCTGGCACGTATCCAGGCCCTGCTGCGCCGCAGCGAAACCGTGGACAGCAAGCGCCAGGACCTGGCCTTCGGTGCGCt > 8:146051/1‑149 (MQ=255) ccAGGTCCAGGCCCTGGACCTGGGCGCCGACGACTACGTCTGCAAACCCGTGCGCCCACGCTTGCTGCTGGCACGTATCCAGGCCCTGCTGCGCCGCAGCGAAACCGTGGACAGCAAGCGCCAGGACCt > 1:290524/1‑129 (MQ=255) ccAGGTCCAGGCCCTGGACCTGGGCGCCGACGACTACGTCTGCAAACCCGTGCGCCCACGCTTGCTGCTGGCACGTATCCAGGCCCTGCTGCGCCGCAGCGAAACCGTGGACAGCAAGCGCCAGGACCt < 2:290524/129‑1 (MQ=255) ccAGGTCCAGGCCCTGGACCTGGGCGCCGACGACTACGTCTGCAAACCCGTGCGCCCACGCTTGCCGCTGGCACGTATCCAGGCCCTGCTGCGCCGCAGCGAAACCGTGGACAGCAAGCGCCAGGACCTGGCCTTCGGTGCGCTGCGTa > 6:186311/1‑149 (MQ=255) aGGTCCAGGGCCTGGACCTGGGCGCCGACGACTACGTCTGCAAACCCGTGCGCCCACGCTTGCTGCTGGCACGTATCCAGGCCCTGCTGCGCCGCAGCGAAACCGTGGACAGCAAGCGCCAGGACCTGGCCTTCGGTGCGCTGCGTATc < 1:277178/149‑1 (MQ=255) tCCAGGGCCTGGACCTGGGCGCCGACGACTACGTCTGCAAACCCGTGCGCCCACGCTTGCTGCTGGCACGTATCCAGGCCCTGCTGCGCCGCAGCGAAACCGTGGACAGCAAGCGCCAGGACCTGGCCTTCg < 6:208047/132‑1 (MQ=255) tCCAGGGCCTGGACCTGGGCGCCGACGACTACGTCTGCAAACCCGTGCGCCCACGCTTGCTGCTGGCACGTATCCAGGCCCTGCTGCGCCGCAGCGAAACCGTGGACAGCAAGCGCCAGGACCTGGCCTTCg > 5:208047/1‑132 (MQ=255) ggCCTGGACCTGGGCGCCGACGACTACGTCTGCAAACCCGTGCGCCCACGCTTGCTGCTGGCACGTATCCAGGCCCTGCTGCGCCGCAGCGAAACCGTGGACAGCAAGCGCCAGGACCTGGCCTTCGGTGCGCTGCGTATCGACAACCg > 7:166832/1‑149 (MQ=255) ccTGGACCTGGGCGCCGACGACTACGTCTGCAAACCCGTGCGCCCACGCTTGCTGCTGGCACGTATCCAGGCCCTGCTGCGCCGCATCGAAACCGTGGACAGCAAGCGCCAGGACCTGGCCTTCGGTGCGCTGCGTATCGACAACCGcc > 8:120322/1‑149 (MQ=255) gACCTGGGCGCCGACGACTACGTCTGCAAACCCGTGCGCCCACGCTTGCTGCTGGCACGTATCCAGGCCCTGCTGCGCCGCAGCGAAACCGTGGACAGCAAGCGCCAGGACCTGGCCTTCGGTGCGCTGCGTATCGACAACCGCCTGCg > 6:251334/1‑149 (MQ=255) gggCGCCGACGACTACGTCTGCAAACCCGTGCGCCCACGCTTGCTGCTGGCACGTATCCAGGCCCTGCTGCGCCGCAGCGAAACCGTGGACAGCAAGCGCCAGGACCTGGCCTTCGGTGCGCTGCGt > 5:5061/1‑127 (MQ=255) gggCGCCGACGACTACGTCTGCAAACCCGTGCGCCCACGCTTGCTGCTGGCACGTATCCAGGCCCTGCTGCGCCGCAGCGAAACCGTGGACAGCAAGCGCCAGGACCTGGCCTTCGGTGCGCTGCGt < 6:5061/127‑1 (MQ=255) gggCGCCGACGACTACGTCTGCAAACCCGTGCGCCCACGCTTGCTGCTGGCACGTATCCAGGCCCTGCTGCGCCGCAGCGAAACCGTGGACAGCAAGCGCCAGGACCTGGCCTTCGGTGCGCCGCGTATCGACAACCGCCTGCGTGAgg > 2:72735/1‑149 (MQ=255) ggCGCCGACGACTACGTCTGCAAACCCGTGCGCCCACGCTTGCTGCTGGCACGTATCCAGGCCCTGCTGCGCCGCAGCGAAACCGTGGACAGCAAGCGCCAGGACCTGGCCTTCGGTGCGCTGCGTATCGACAACCGCCTGCGTGAgg < 2:215838/148‑1 (MQ=255) cgacgaCTACGTCTGCAAACCCGTGCGCCCACGCTTGCTGCTGGCACGTATCCAGGCCCTGCTGCGCCGCAGCGAAACCGTGGACAGCAAGCGCCAGGACCTGGCCTTCGGTGCGCTGCGTATCGACAACCGCCTGCGTGAGGCGCGcc > 3:269023/1‑149 (MQ=255) cgacTACGTCTGCAAACCCGTGCGCCCACGCTTGCTGCTGGCACGTATCCAGGCCCTGCTGCGCCGCAGCGAAACCGTGGACAGCAAGCGCCAGGACCTGGCCTTCGGTGCGCTGCGTATCGACAACCGCCTGCGTGAGGCGCGCCTgg < 7:146051/149‑1 (MQ=255) gacTACGTCTGCAAACCCGTGCGCCCACGCTTGCTGCTGGCACGTATCCAGGCCCTGCTGCGCCGCAGCGAAACCGTGGACAGCAAGCGCCAGGACCTGGCCTTCGGTGCGCTGCGTATCGACAACCGCCTGCGTGAGGCGCGCCTggg < 8:73542/149‑1 (MQ=255) cTACGTCTGCAAACCCGTGCGCCCACGCTTGCTGCTGGCACGTATCCAGGCCCTGCTGCGCCGCAGCGAAACCGTGGACAGCAAGCGCCAGGACCTGGCCTTCGGTGCGCTGCGTATCGACAACCGCCTGCGTGAGGCGCGCCTGGGc > 4:195994/1‑148 (MQ=255) aCGTCTGCAAACCCGTGCGCCCACGCTTGCTGCTGGCACGTATCCAGGCCCTGCTGCGCCGCAGCGAAACCGTGGACAGCAAGCGCCAGGACCTGGCCTTCGGTGCGCTGCGTATCGACaa > 6:198951/1‑121 (MQ=255) aCGTCTGCAAACCCGTGCGCCCACGCTTGCTGCTGGCACGTATCCAGGCCCTGCTGCGCCGCAGCGAAACCGTGGACAGCAAGCGCCAGGACCTGGCCTTCGGTGCGCTGCGTATCGACaa < 5:198951/121‑1 (MQ=255) cGTCTGCAAACCCGTGCGCCCACGCTTGCTGCTGGCACGTATCCAGGCCCTGCTGCGCCGCAGCGAAACCGTGGACAGCAAGCGCCAGGACCTGGCCTTCGGTGCGCTGCGTATCGACAACCGCCTGCGTGAGGCGCGCCTGGGCGAg < 7:120322/148‑1 (MQ=255) cTGCAAACCCGTGCGCCCACGCTTGCTGCTGGCACGTATCCAGGCCCTGCTGCGCCGCAGCGAAACCGTGGACAGCAAGCGCCAGGACCTGGCCTTCGGTGCGCTGCGTATCGACAACCGCCTGCGTGAGGCGCGCCTGGGCGAGCAGt > 3:198257/1‑149 (MQ=255) gCAAACCCGTGCGCCCACGCTTGCTGCTGGCACGTATCCAGGCCCTGCTGCGCCGCAGCGAAACCGTGGACAGCAAGCGCCAGGACCTGGCCTTCGGTGCGCTGCGTATCGACAACCGCCTGCGTGAGGCGCGCCTGGGCGAGCAGtt > 8:215372/1‑148 (MQ=255) gCAAACCCGTGCGCCCACGCTTGCTGCTGGCACGTATCCAGGCCCTGCTGCGCCGCAGCGAAACCGTGGACAGCAAGCGCCAGGACCTGGCCTTCGGTGCGCTGCGTATCGACAACCGCCTGCGTGAGGCGCGCCTGGGCGAGCAGtt > 2:101885/1‑148 (MQ=255) cAAACCCGTGCGCCCACGCTTGCTGCTGGCACGTATCCAGGCCCTGCTGCGCCGCAGCGAAACCGTGGACAGCAAGCGCCAGGACCTGGCCTTCGGTGCGCTGCGTATCGACAACCGCCTGCGTGAGGCGCGCCTGGGCGAGCAGtt < 3:195994/147‑1 (MQ=255) cAAACCCGTGCGCCCACGCTTGCTGCTGGCACGTATCCAGGCCCTGCTGCGCCGCAGCGAAACCGTGGACAGCAAGCGCCAGGACCTGGCCTTCGGTGCGCTGCGTATCGACAACCGCCTGCGTGAGGCGCGCCTGGGCGAGCAGt < 8:166832/146‑1 (MQ=255) cAAACCCGTGCGCCCACGCTTGCTGCTGGCACGTATCCAGGCCCTGCTGCGCCGCAGCGAAACCGTGGACAGCAAGCGCCAGGACCTGGCCTTCGGTGCGCTGCGTATCGACAACCGCCTGCGTGAGGCGCGCCTGGGCGAGCAGt < 5:251334/146‑1 (MQ=255) cAAACCCGTGCGCCCACGCTTGCTGCTGACACGTATCCAGGCCCTGCTGCGCCGCAGCGAAACCGTGGACAGCAAGCGCCAGGACCTGGCCTTCGGTGCGCTGCGTATCGACAACCGCCTGc > 2:304857/1‑122 (MQ=255) ccGTGCGCCCACACTTGCTGCTGGCACGTATCCAGGCCCTGCTGCGCCGCAGCGAAACCGTGGACAGCAAGCGCCAGGACCTGGCCTTCGGTGCGCTGCGTATCGACAACCGCCTGCGTGAGGCGCGCCTGGGCGAGCAGTTGATCGAg > 4:132780/1‑149 (MQ=255) cGTGCGCCCACGCTTGCTGCTGGCACGTATCCAGGCCCTGCTGCGCCGCAGCGAAACCGTGGACAGCAAGCGCCAGGACCTGGCCTTCGGTGCGCTGCGTATCGACAACCGCCTGCGTGAGGCGCGCCTGGGCGAGCAGTTGATCGAGc < 1:15870/149‑1 (MQ=255) gTGCGCCCACGCTTGCTGCTGGCACGTATCCAGGCCCTGCTGCGCCGCAGCGAAACCGTGGACAGCAAGCGCCAGGACCTGGCCTTCGGTGCGCTGCGTATCGACAACCGCCTGCGTGAGGCGCGCCTGGGCGAGCAGTTGATCGAGCt > 3:203232/1‑149 (MQ=255) cgcCCACGCTTGCTGCTGGCACGTATCCAGGCCCTGCTGCGCCGCAGCGAAACCGTGGACAGCAAGCGCCAGGACCTGGCCTTCGGTGCGCTTCGTATCGACAACCGCCTGCGTGAGGCGCGCCTGGGCGAGCAGTTGATCGAGCTGAc < 7:93042/149‑1 (MQ=255) ccACGCTTGCTGCTGGCACGTATCCAGGCCCTGCTGCGCCGCAGCGAAACCGTGGAcagcaagcgtgggcgcacgggtttgcagacgtagtcgtcggcgcccaggtccaggccctggacctggtccagttcatcactgcgcgcgg < 8:89741‑M2/145‑90 (MQ=255) ccACGCTTGCTGCTGGCACGTATCCAGGCCCTGCTGCGCCGCAGCGAAACCGTGGAcagcaagcgtgggcgcacgggtttgcagacgtagtcgtcggcgcccaggtccaggccctggacctggtccagttcatcactgcgcgcgg > 7:89741‑M2/1‑56 (MQ=255) cACGCTTGCTGCTGGCACGTATCCAGGCCCTGCTGCGCCGCAGCGAAACCGTGGAcagcaagcgtgggcgcacgggtttgcagacgtagtcgtcggcgcccaggtccaggccctggacctggtccagttcatcactgcgcgcggtgag < 3:228683‑M2/148‑94 (MQ=255) cACGCTTGCTGCTGGCACGTATCCAGGCCCTGCTGCGCCGCAGCGAAACCGTGGACAGCAAGCGCCAGGACCTGGCCTTCGGTGCGCTGCGTAt > 7:252873/1‑94 (MQ=255) cACGCTTGCTGCTGGCACGTATCCAGGCCCTGCTGCGCCGCAGCGAAACCGTGGACAGCAAGCGCCAGGACCTGGCCTTCGGTGCGCTGCGTAt < 8:252873/94‑1 (MQ=255) cGCTTGCTGCTGGCACGTATCCAGGCCCTGCTGCGCCGCAGCGAAACCGTGGACAGCAAGCGCCAGGACCTGGCCTTCGGTGCGCTGCGTATCGACAACCGCCTGCGTGAGGCGCGCCTGGGCGAGCAGTTGATCGAGCTGACCGgcgc < 7:215372/149‑1 (MQ=255) ccgctgGCACGTATCCAGGCCCTGCTGCGCCGCAGCGAAACCGTGGACAGCAAGCGCCAGGACCTGGCCTTCGGTGCGCTGCGTATCGACAACCGCCTGCGTGAGGCGCGCCTGGGCGAGCAGTTGATCGAGCTGACCGGCGCCGAAt < 5:186311/146‑1 (MQ=255) tgctgGCACGTATCCAGGCCCTGCTGCGCCGCAGCGAAACCGTGGACAGCAAGCGCCAGGACCTGGCCTTCGGTGCGCTGCGTATCGACAACCGCCTGCGTGAGGCGCGCCTGGGCGAGCAGTTGATCGAGCTGACCGGCGCCGAATTc > 2:8889/1‑149 (MQ=255) tCCAGGCCCTGCTGCGCCGCAGCGAAACCGTGGACAGCAAGCGCCAGGACCTGGCCTTCGGTGCGCTGCGTATCGACAACCGCCTGCGTGAGGCGCGCCTGGGCGAGCAGTTGATCGAGCTGACCGGCGCCGAATTCGACCTGCTCTgg > 8:289361/1‑149 (MQ=255) aGGCCCTGCTGCGCCGCAGCGAAACCGTGGACAGCAAGCGCCAGGACCTGGCCTTCGGTGCGCTGCGTATCGACAACCGCCTGCGTGAGGCGCGCCTGGGCGAGCAGTTGATCGAGCTGACCGGCGCCGAATTCGACCTGCTCTGGCTg < 5:15044/149‑1 (MQ=255) ggCCCTGCTGCGCCGCAGCGAAACCGTGGACAGCAAGCGCCAGGACCTGGCCTTCGGTGCGCTGCGTATCGACAACCGCCTGCGTGAGGCGCGCCTGGGCGAGCAGTTGATCGAGCTGACCGGCGCCGAATTCGACCTGCTCTGGCTGt < 4:269023/149‑1 (MQ=255) gCCCTGCTGCGCCGCAGCGAAACCGTGGACAGCAAGCGCCAGGACCTGGCCTTCGGTGCGCTGCGTATCGACAACCGCCTGCGTGAGGCGCGCCTGGGCGAGCAGTTGATCGAGCTGACCGGCGCCGAATTCGACCTGCTCTGGCTGtt < 4:198257/149‑1 (MQ=255) cccTGCTGCGCCGCAGCGAACCCGTGGACAGCAAGCGCCAGGACCTGGCCTTCGGTGCGCTGCGTATCGACAACCGCCTGCGTGAGGCGCGCCTGGGCGAGCAGTTGATCGAGCTGACCGGCGCCGACTTCGACCTGCTCTGGCTGGTg < 4:203232/149‑1 (MQ=255) cccTGCTGCGCCGCAGCGAAACCGTGGACAGCAAGCGCCAGGACCTGGCCTTCGGTGCGCTGCGTATCGACAACCGCCTGCGTGAGGCGCGCCTGGGCGAGCAGTTGATCGAGCTGACCGGCGCCGAATTCGACCTGCTCTGGCTGTTg < 7:158392/149‑1 (MQ=255) gccgcAGCGAAACCGTGGACAGCAAGCGCCAGGACCTGGCCTTCGGTGCGCCGCGTATCGACAACCGCCTGCGTGAGGCGCGCCTGGGCGAGCAGTTGATCGAGCTGACCGGCGCCGAATTCGACCTGCTCTGGCTGTTGGCCAGCAAc < 1:72735/149‑1 (MQ=255) cGAAACCGTGGACAGCAAGCGCCAGGACCTGGCCTTCGGTGCGCTGCGTATCGACAACCGCCTGCGTGAGGCGCGCCTGGGCGAGCAGTTGATCGAGCTGACCGGCGCCGAATTCGACCTGCTCTGGCTGTTGGCCAGCAACGCTGGcc < 1:8889/149‑1 (MQ=255) ccGTGGACAGCAAGCGCCAGGACCTGGCCGTCGGTGCGCTGCGTAGCGTCCACCGCCTGCGGGAGGCGCGCGTGGGCGAGCAGCTGATCGAGCTGACCGGCGCCGAATTCGACCTGCTCTGGCTGTTGGCCAGCAACGCTGGCCGCGTg < 8:181179/149‑1 (MQ=255) gAcagcaagcgtgggcgcacgggtttgcagacgtagtcgtcggcgcccaggtccaggccctggacctggtccagttcatcactgcgcgcggtgagcatgaggatcggcccctggtactggctgcgcacccggcggcagatgctcaggc > 4:228683‑M2/1‑2 (MQ=255) aCAGCAAGCGCCAGGACCTGGCCTTCGGTGCGCTGCGTATCGACAACCGCCTGCGTGAGGCGCGCCTGGGCGAGCAGTTGATCGAGCTGACCGGCGCCGAATTCGACCTGCTCTGGCTGTTGGCCAGCAACGCTGGCCGCGTGCTGAcc > 8:149635/1‑149 (MQ=255) | TCCTCATGCTCACCGCGCGCAGTGATGAACTGGACCAGGTCCAGGGCCTGGACCTGGGCGCCGACGACTACGTCTGCAAACCCGTGCGCCCACGCTTGCTGCTGGCACGTATCCAGGCCCTGCTGCGCCGCAGCGAAACCGTGGACAGCAAGCGCCAGGACCTGGCCTTCGGTGCGCTGCGTATCGACAACCGCCTGCGTGAGGCGCGCCTGGGCGAGCAGTTGATCGAGCTGACCGGCGCCGAATTCGACCTGCTCTGGCTGTTGGCCAGCAACGCTGGCCGCGTGCTGACC > NC_002947/1356360‑1356652 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |