| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 1795833 | 50 (1.020) | 3 (0.060) | 3/254 | NT | 5.7% | coding (141/1056 nt) | lpxD | UDP‑3‑O‑acylglucosamine N‑acyltransferase |
| ? | NC_002947 | = 1795872 | 51 (1.080) | coding (180/1056 nt) | lpxD | UDP‑3‑O‑acylglucosamine N‑acyltransferase | |||||
AGCCCGTTGATATGAGTGTGACCATGACGCTAGGCCAGCTGGCCGAGGTACTCGGAGCTACCCTCAAGGGGCCCGAGGCGCTGCAGATTACCGGGTTGGCCACCTTGCAGGAGGCTGGCCCGACGCAGTTGAGCTTCCTCGCCAACCCGCAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/1795682‑1795833‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcagCACCGCGCCGGCCTGGCTGTTATCCAGGTACTTGCGGTACTGCGGGTTGGCGAGGAAGCTCAACTGCGTCGGGCCAGCCTCCTGCAAGGTGGCCAACCCGGTAATCTGCAGCGCCTCGGGCCCCTTGAGGGTAGCTCCGAGTACCTCG < NC_002947/1795872‑1795725 AGCCCTTTGAAATGAGTGTGACCATGACGCTATGCCAGCTGGCCGAGGTACTCGTAGCTACCCTCACGGGGCCCGAGGCGCTTCAGATTACCGGGTTGGCCACCTTGCAGGAGGCTGGCCCGACGCAGTTTAGCTTCCTCGCCAACCCG < 2:83214/149‑1 CCGTTGATATGAGTGTGACCATGACGCTAGGCCAGCTGGCCGAGGTACTCGGAGCTACCCTCAAGGGGCCCGAGGCGCTGCAGATTACCGGGTTGGCCACCTTGCAGGAGGCTGGCCCGACGCAGTTGAGCTTCCTCGCCAACCCG > 8:124825/1‑146 ACCATGACGCTAGGCCAGCTGGCCGAGGTACTCGGAGCTACCCTCAAGGGGCCCGAGGCGCTGCAGATTACCGGGTTGGCCACCTTGCAGGAGGCTGGCCCGACGCAGTTGAGCTTCCTCGCCAACCCGC > 1:271896/1‑130 ACCATGACGCTAGGCCAGCTGGCCGAGGTACTCGGAGCTACCCTCAAGGGGCCCGAGGCGCTGCAGATTACCGGGTTGGCCACCTTGCAGGAGGCTGGCCCGACGCAGTTGAGCTTCCTCGCCAACCCGC < 2:271896/130‑1 GGTACTCGGAGCTACCCTCAAGGGGCCCGAGGCGCTGCAGATTACCGGGTTGGCCACCTTGCAGGAGGCTGGCCCGACGCAGTTGAGCTTCCTCGCCAACCCGCAGCACCGCGCCGGCCTGGCTGTTATCCAGGTACTTGCGGTACTGC < 2:191887/149‑1 GGAGCTACCCTCAAGGGGCCCGAGGCGCTGCAGATTACCGGGTTGGCCACCTTGCAGGAGGCTGGCCCGACGCAGTTGAGCTTCCTCGCCAACCCGCAGCACCGCGCCGGCCTGGCTGTTATCCAGGTACTTGCGGTA < 5:77013/138‑1 GGAGCTACCCTCAAGGGGCCCGAGGCGCTGCAGATTACCGGGTTGGCCACCTTGCAGGAGGCTGGCCCGACGCAGTTGAGCTTCCTCGCCAACCCGCAGCACCGCGCCGGCCTGGCTGTTATCCAGGTACTTGCGGTA > 6:77013/1‑138 AGCACCGCGCCGGCCTGGCTGTTATCCAGGTACTTGCGGTACTGCGGGTTGGCGAGGAAGCTCAACTGCGTCGGGCCAGCCTCCTGCAAGGTGGCCAACCCGGTAATCTGCAGCGCCTCGGGCCCCTTGAGGGTAGCTCCGAGTACCTC < 3:198863/149‑1 GCACCGCGCCGGCCTGGCTGTTATCCAGGTACTTGCGGTACTGCGGGTTGGCGAGGAAGCTCAACTGCGTCGGGCCAGCCTCCTGCAAGGTGGCCAACCCGGTAATCTGCAGCGCCTCGGGCCCCTTGAGGGTAGCTCCGAGTACCTCG < 3:297274/149‑1 AGCCCGTTGATATGAGTGTGACCATGACGCTAGGCCAGCTGGCCGAGGTACTCGGAGCTACCCTCAAGGGGCCCGAGGCGCTGCAGATTACCGGGTTGGCCACCTTGCAGGAGGCTGGCCCGACGCAGTTGAGCTTCCTCGCCAACCCGCAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/1795682‑1795833‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcagCACCGCGCCGGCCTGGCTGTTATCCAGGTACTTGCGGTACTGCGGGTTGGCGAGGAAGCTCAACTGCGTCGGGCCAGCCTCCTGCAAGGTGGCCAACCCGGTAATCTGCAGCGCCTCGGGCCCCTTGAGGGTAGCTCCGAGTACCTCG < NC_002947/1795872‑1795725 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |