New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 1795833	50 (1.020)	3 (0.060)	3/254	NT	5.7%	coding (141/1056 nt)	lpxD	UDP‑3‑O‑acylglucosamine N‑acyltransferase
	?	NC_002947	= 1795872	51 (1.080)					coding (180/1056 nt)	lpxD	UDP‑3‑O‑acylglucosamine N‑acyltransferase

ATATGAGTGTGACCATGACGCTAGGCCAGCTGGCCGAGGTACTCGGAGCTACCCTCAAGGGGCCCGAGGCGCTGCAGATTACCGGGTTGGCCACCTTGCAGGAGGCTGGC‑CCGACGCAGTTGAGCTTCCTCGCCAACCCGCAGTACCGCAAGTACCTGGATAACAGCCAGGCCGGCGCGGTGCTGCTCAAGGCTGCGGATGCCGAAAGCTTTGCCGGCAATACCCTGGTCGTGGCGGACCCGTACCTGGCTTACGCGCGAATTTCCCACCTGTTCGATCCCAAACCCAAGG  >  NC_002947/1795691‑1795981                                                                                                                                                |                                                                                                                                                     atatGAGTGTGACCATGACGCTAGGCCAGCTGGCCGAGGTACTCGGAGCTACCCTCAAGGGGCCCGAGGCGCTGCAGATTACCGGGTTGGCCACCTTGCAGGAGGCTGGC‑CCGACGCAGTTGAGCTTCCTCGCCAACCCGCAGTACCGc                                                                                                                                                <  1:221110/149‑1 (MQ=255)    tGAGTGTGACCATGACGCTAGGCCAGCTGGCCGAGGTACTCGGAGCTACCCTCAAGGGGCCCGAGGCGCTGCAGATTACCGGGTTGGCCACCTTGCAGGAGGCTGGC‑CCGACGCAGTTGAGCTTCCTCGCCAACCCGCAGTACCGCAAg                                                                                                                                             <  2:153542/149‑1 (MQ=255)           gACCATGACGCTAGGACACCTGGCAGAGGTACTCGGAGCTACCCTCAAGGGGCCCGAGGCGCTGCAGATTACCGGGTTCGCCACATTGCAGGAGGCAGGC‑CCGACCCACTTCAGCTTCCTCCCCAACCCGCAGTACCGCAAGTAccag                                                                                                                                       >  4:263290/1‑146 (MQ=255)                  aCGCTAGGCCAGCTGGCCGAGGTACTCGGAGCTACCCTCAAGGGGCCCGAGGCGCTGCAGATTACCGGGTTGGCCACCTTGCAGGAGGCTGGC‑CCGACGCAGTTGAGCTTCCTCGCCAACCCGCAGTACCGCAAGTACCTGGATAACa                                                                                                                                <  4:288635/148‑1 (MQ=255)                  aCGCTAGGCCAGCTGGCCGAGGTACTCGGAGCTACCCTCAAGGGGCCCGAGGCGCTGCAGATTACCGGGTTGGCCACCTTGCAGGAGGCTGGC‑CCGACGCAGTTGAGCTTCCTCGCCAACCCGCAGTACCGCAAGTACCTGGATAACAg                                                                                                                               <  3:263715/149‑1 (MQ=255)                        ggCCAGCTGGCCGAGGTACTCGGAGCTACCCTCAAGGGGCCCGAGGCGCTGCAGATTACCGGGTTGGCCACCTTGCAGGAGGCTGGC‑CCGACGCAGTTGAGCTTCCTCGCCAACCCGCAGTACCGCAAGTACCTGGATAACAGCCAGGc                                                                                                                         <  6:145919/149‑1 (MQ=255)                             gCTGGCAGAGGTACTCGGAGCTACCCTCATGGGGCCCGAGGCGCTGCAGATTACCGGGTTGGCCACCTTGCAGGAGGCTGGC‑CCGACGCAGTTGAGCTTCCTCGCCAACCCGCAGTACCTCAAGTACCTGGATAACAGCCAGGCCGgcg                                                                                                                    <  3:263290/149‑1 (MQ=255)                                   cGAGGTACTCGGAGCTACCCTCAAGGGGCCCGAGGCGCTGCAGATTACCGGGTTGGCCACCTTGCAGGAGGCTGGC‑CCGACGCAGTTGAGCTTCCTCGCCAACCCGCAGTACCGCAAGTACCTGGATAACAGCCAGGCCGGCGCGGTGc                                                                                                              <  3:297274‑M2/149‑2 (MQ=255)                                    gAGGTACTCGGAGCTACCCTCAAGGGGCCCGAGGCGCTGCAGATTACCGGGTTGGCCACCTTGCAGGAGGCTGGC‑CCGACGCAGTTGAGCTTCCTCGCCAACCCGCAGTACCGCAAGTACCTGGATAACAGCCAGGCCGGCGCGGTGct                                                                                                             <  3:198863‑M2/149‑3 (MQ=255)                                      ggTACTCGGAGCTACCCTCAAGGGGCCCGAGGCGCTGCAGATTACCGGGTTGGCCACCTTGCAGGAGGCTGGC‑CCGACGCAGTTGAGCTTCCTCGCCAACCCGCAGcaccgcgccggcctggctgttatccaggtacttgcggtactgc                                                                                                           <  2:191887‑M1/149‑44 (MQ=255)                                          cTCGGAGCTACCCTCAAGGGGCCCGAGGCGCTGCAGATTACCGGGTTGGCCACCTTGCAGGAGGCTGGC‑CCGACGCAGTTGAGCTTCCTCGCCAACCCGCAGTACCGCAAGTACCTGGATAACAGCCAGGCCGGCGCGGTGCTGCTc                                                                                                         >  7:60618/1‑147 (MQ=255)                                          cTCGGAGCTACCCTCAAGGGGCCCGAGGCGCTGCAGATTACCGGGTTGGCCACCTTGCAGGAGGCTGGC‑CCGACGCAGTTGAGCTTCCTCGCCAACCCGCAGTACCGCAAGTACCTGGATAACAGCCAGGCCGGCGCGGTGCTGCTCaa                                                                                                       <  4:150290/149‑1 (MQ=255)                                           tCGGAGCTACCCTCAAGGGGCCCGAGGCGCTGCAGATTACCGGGTTGGCCACCTTGCAGGAGGCTGGC‑CCGACGCAGTTGAGCTTCCTCGCCAACCCGCAGTACCGCAAGTACCTGGAt                                                                                                                                    <  4:27099/119‑1 (MQ=255)                                           tCGGAGCTACCCTCAAGGGGCCCGAGGCGCTGCAGATTACCGGGTTGGCCACCTTGCAGGAGGCTGGC‑CCGACGCAGTTGAGCTTCCTCGCCAACCCGCAGTACCGCAAGTACCTGGAt                                                                                                                                    >  3:27099/1‑119 (MQ=255)                                           tCGGAGCTACCCTCAAGGGGCCCGAGGCGCTGCAGATTACCGGGTTGGCCACCTTGCAGGAGGCTGGC‑CCGACGCAGTTGAGCTTCCTCGCCAACCCGCAGTACCGCAAGTACCTGGATAACAGCCAGGCCGGCGCGGTGCTGCTCAAg                                                                                                      >  6:206911/1‑149 (MQ=255)                                            cGGAGCTACCCTCAAGGGGCCCGAGGCGCTGCAGATTACCGGGTTGGCCACCTTGCAGGAGGCTGGC‑CCGACGCAGTTGAGCTTCCTCGCCAACCCGCAGTACCGCAAGTACCTGGATAACAGCCAGGCCGGCGCGGTGCTGCTCAAgg                                                                                                     >  2:10223/1‑149 (MQ=255)                                             ggAGCTACCCTCAAGGGGCCCGAGGCGCTGCAGATTACCGGGTTGGCCACCTTGCAGGAGGCTGGC‑CCGACGCAGTTGAGCTTCCTCGCCAACCCGCAGcaccgcgccggcctggctgttatccaggtacttgcggta                                                                                                               >  6:77013‑M1/1‑99 (MQ=255)                                             ggAGCTACCCTCAAGGGGCCCGAGGCGCTGCAGATTACCGGGTTGGCCACCTTGCAGGAGGCTGGC‑CCGACGCAGTTGAGCTTCCTCGCCAACCCGCAGcaccgcgccggcctggctgttatccaggtacttgcggta                                                                                                               <  5:77013‑M1/138‑40 (MQ=255)                                             ggAGCTACCCTCAAGGGGCCCGAGGCGCTGCAGATTACCGGGTTGGCCACCTTGCAGGAGGCTGGC‑CCGACGCAGTTGAGCTTCCTCGCCAACCCGCAGTACCGCAAGTACCTGGATAACAGCCAGGCCGGCGCGGTGCTGCTCAAg                                                                                                      <  7:124825/147‑1 (MQ=255)                                             ggAGCTACCCTCAAGGGGCCCGAGGCGCTGCAGATTACCGGGTTGGCCACCTTGCAGGAGGCTGGC‑CCGACGCAGTTGAGCTTCCTCGCCAACCCGCAGTACCGCAAGTACCTGGATAACAGCCAGGCCGGCGCGGTGCTGCTCAAGGc                                                                                                    >  3:79246/1‑149 (MQ=255)                                               aGCTACCCTCAAGGGGCCCGAGGCGCTGCAGATTACCGGGTTGGCCACCTTGCAGGAGGCTGGC‑CCGACGCAGTTGAGCTTCCTCGCCAACCCGCAGTACCGCAAGTACCTGGATAACAGcc                                                                                                                             <  2:6388/122‑1 (MQ=255)                                                     ccTCAAGGGGCCCGAGGCGCTGCAGATTACCGGGTTGGCCACCTTGCAGGAGGCTGGC‑CCGACGCAGTTGAGCTTCCTCGCCAACCCGCAGTACCGCAAGTACCTGGATAACAGCCAGGCCGGCGCGGTGCTGCTCAAGGCTg                                                                                                  >  8:263793/1‑143 (MQ=255)                                                     ccTCAAGGGGCCCGAGGCGCTGCAGATTACCGGGTTGGCCACCTTGCAGGAGGCTGGC‑CCGACGCAGTTGAGCTTCCTCGCCAACCCGCAGTACCGCAAGTACCTGGATAACAGCCAGGCCGGCGCGGCGCTGCTCAAGGCTg                                                                                                  <  7:263793/143‑1 (MQ=255)                                                         aaGGGGCCCGAGGCGCTGCAGATTACCGGGTTGGCCACCTTGCAGGAGGCTGGC‑CCGACGCAGTTGAGCTTCCTCGCCAACCCGCAGTACCGCAAGTACCTGGATAACAGCCAGGCCGGCGCGGTGCTGCTCAAGGCTGCGGATGCCg                                                                                         <  4:198863/148‑1 (MQ=255)                                                          aGGGGCCCGAGGCGCTGCAGATTACCGGGTTGGCCACCTTGCAGGAGGCTGGCGCCGACGCAGTTGAGCTTCCTCGCCAACCCGCAGTACCGCAAGTACCTGGATAACAGCCAGGCCGGCGCGGTGCTGCTCAAGGCTGCGGATGCCg                                                                                         >  1:79927/1‑148 (MQ=255)                                                           ggggCCCGAGGCGCTGCAGATTACCGGGTTGGCCACCTTGCAGGAGGCTGGC‑CCGACGCAGTTGAGCTTCCTCGCCAACCCGCAGTACCGCaa                                                                                                                                              <  5:298799/93‑1 (MQ=255)                                                           ggggCCCGAGGCGCTGCAGATTACCGGGTTGGCCACCTTGCAGGAGGCTGGC‑CCGACGCAGTTGAGCTTCCTCGCCAACCCGCAGTACCGCaa                                                                                                                                              >  6:298799/1‑93 (MQ=255)                                                               cccGAGGCGCTGCAGATTACCGGGTTGGCCACCTTGCAGGAGGCTGGC‑CCGACGCAGTTGAGCTTCCTCGCCAACCCGCAGTACCGCAAGTACCTGGATAACAGCCAGGCCGGCGCGGTGCTGCTCAAGGCTGCGGATGCCGAAAGCtt                                                                                  >  7:63836/1‑149 (MQ=255)                                                                  gAGGCGCTGCAGATTACCGGGTTGGCCACCTTGCAGGAGGCTGGC‑CCGACGCAGTTGAGCTTCCTCGCCAACCCGCAGTACCGCAAGTACCTGGATAACAGCCAGGCCGGCGCGGTGCTGCTCAAGGCTGCGGATGCCGAAAGCTTTGc                                                                               >  3:207021/1‑149 (MQ=255)                                                                          gCAGATTACCGGGTTGGCCACCTTGCAGGAGGCTGGC‑CCGACGCAGTTGAGCTTCCTCGCCAACCCGCAGTACCGCAAGTACCTGGATAACAGCCAGGCCGGCGCGGTGCTGCTCAAGGCTGCGGATGCCGAAAGCTTTGCCGGCAATa                                                                       >  8:235392/1‑149 (MQ=255)                                                                           cAGATTACCGGGTTGGCCACCTTGCAGGAGGCTGGC‑CCGACGCAGTTGAGCTTCCTCGCCAACCCGCAGTACCGCAAGTACCTGGATAACAGCCAGGCCGGCGCGGTGCTGCTCAAGGCTGCGGATGCCGAAAGCTTTGCCGGCAAt                                                                        <  4:79246/147‑1 (MQ=255)                                                                           cAGATTACCGGGTTGGCCACCTTGCAGGAGGCTGGC‑CCGACGCAGTTGAGCTTCCTCGCCAACCCGCAGTACCGCAAGTACCTGGATAACAGCCAGGCCGGCGCGGTGCTGCTCAAGGCTGCGGATGCCGAAAGCTTTGCCGGCAATAc                                                                      >  6:296696/1‑149 (MQ=255)                                                                                  ccGGGTTGGCCACCTTGCAGGAGGCTGGC‑CCGACGCAGTTGAGCTTCCTCGCCAACCCGCAGTACCGCAAGTACCTGGATAACAGCCAGGCCGGCGCGGTGCTGCTCAAGGCTGCGGATGCCGAAAGCTTTGCCGGCAATACCCTGGTc                                                               >  7:227292/1‑149 (MQ=255)                                                                                  ccGGGTTGGCCACCTTGCAGGAGGCTGGC‑CCGACGCAGTTGAGCTTCCTCGCCAACCCGCAGTACCGCAAGTACCTGGATAACAGCCAGGCCGGCGCGGTGCTGCTCAAGGCTGCGGATGCCGAAAGCTTTGCCGGCAATACCCTGGTc                                                               >  8:14293/1‑149 (MQ=255)                                                                                   cGGGTTGGCCACCTTGCAGGAGGCTGGC‑CCGACGCAGTTGAGCTTCCTCGCCAACCCGCAGTACCGCAAGTACCTGGATAACAGCCAGGCCGGCGCGGTGCTGCTCAAGGCTGCGGATGCCGAAAGCTTTGCCGGCAATACCCTGGTCg                                                              >  3:116779/1‑149 (MQ=255)                                                                                       ttGGCCACCTTGCAGGAGGCTGGC‑CCGACGCAGTTGAGCTTCCTCGCCAACCCGCAGTACCGCAAGTACCTGGATAACAGCCAGGCCGGCGCGGTGCTGCTCAAGGCTGCGGATGCCGAAAGCTTTGCCGGCAATACCCTGGTCGTGGc                                                          <  4:116779/149‑1 (MQ=255)                                                                                         ggCCACCTTGCAGGAGGCTGGC‑CCGACGCAGTTGAGCTTCCTCGCCAACCCGCAGTACCGCAAGTACCTGGATAACAGCCAGGCCGGCGCGGTGCTGCTCAAGGCTGCGGATGCCGAAAGCTTTGCCGGCAATACCCTGGTCGTGGCg                                                         <  2:79927/148‑1 (MQ=255)                                                                                           ccACCTTGCAGGAGGCTGGC‑CCGACGCAGTTGAGCTTCCTCGCCAACCCGCAGTACCGCAAGTACCTGGATAACAGCCAGGCCGGCGCGGTGCTGCTCAAGGCTGCGGATGCCGAAAGCTTTGCCGGCAATACCCTGGTCGTGGCGGAc                                                      >  6:58287/1‑149 (MQ=255)                                                                                            cACCTTGCAGGAGGCTGGC‑CCGACGCAGTTGAGCTTCCTCGCCAACCCGCAGTACCGCAAGTACCTGGATAACAGCCAGGCCGGCGCGGTGCTGCTCAAGGCTGCGGATGCCGAAAGCTTTGCCgg                                                                            >  6:76711/1‑126 (MQ=255)                                                                                            cACCTTGCAGGAGGCTGGC‑CCGACGCAGTTGAGCTTCCTCGCCAACCCGCAGTACCGCAAGTACCTGGATAACAGCCAGGCCGGCGCGGTGCTGCTCAAGGCTGCGGATGCCGAAAGCTTTGCCgg                                                                            <  5:76711/126‑1 (MQ=255)                                                                                                  gCAGGAGGCTGGC‑CCGACGCAGTTGAGCTTCCTCGCCAACCCGCAGTACCGCAAGTACCTGGATAACAGCCAGGCCGGCGCGGTGCTGCTCAAGGCTGCGGATGCCGAAAGCTTTGCCGGCAATACCCTGGTCGTGGCGGACCCGTAc                                                <  7:235392/148‑1 (MQ=255)                                                                                                    aggaggCTGGC‑CCGACGCAGTTGAGCTTCCTCGCCAACCCGCAGTACCGCAAGTACCTGGATAACAGCCAGGCCGGCGCGGTGCTGCTCAAGGCTGCGGATGCCGAAAGCTTTGCCGGCAATACCCTGGTCGTGGCGGACCCGTACCTg                                             <  5:296696/149‑1 (MQ=255)                                                                                                                       aGTTGAGCTTCCTCGCCAACCCGCAGTACCGCAAGTACCTGGATAACAGCCAGGCCGGCGCGGTGCTGCTCAAGGCTGCGGATGCCGAAAGCTTTGCCGGCAATACCCTGGTCGTGGCGGACCCGTACCTGGCTTACGCGCGAATTTcc                           <  4:207021/149‑1 (MQ=255)                                                                                                                           gAGCTTCCTCGCCAACCCGCAGTACCGCAAGTACCTGGATAACAGCCAGGCCGGCGCGGTGCTGCTCAAGGCTGCGGATGCCGAAAGCTTTGCCGGCAATACCCTGGTCGTGGCGGACCCGTACCTGGCTTACGCGCGAATTTCCCAc                        <  4:238890/148‑1 (MQ=255)                                                                                                                              cTTCCTCGCCAACCCGCAGTACCGCAAGTACCTGGATAACAGCCAGGCCGGCGCGGTGCTGCTCAAGGCTGCGGATGCCGAAAGCTTTGCCGGCAATACCCTGGTCGTGGCGGACCCGTACCTGGCTTACGCGCGAATTTcc                           >  1:309157/1‑142 (MQ=255)                                                                                                                              cTTCCTCGCCAACCCGCAGTACCGCAAGTACCTGGATAACAGCCAGGCCGGCGCGGTGCTGCTCAAGGCTGCGGATGCCGAAAGCTTTGCCGGCAATACCCTGGTCGTGGCGGACCCGTACCTGGCTTACGCGCGAATTTcc                           <  2:309157/142‑1 (MQ=255)                                                                                                                              cTTCCTCGCCAACCCGCAGTACCGCAAGTACCTGGATAACAGCCAGGCCGGCGCGGTGCTGCTCAAGGCTGCGGATGCCGAAAGCTTTGCCGGCAATACCCTGGTCGTGGCGGACCCGTACCTGGCTTACGCGCGAATTTCCCACCTGt                    >  7:8462/1‑149 (MQ=255)                                                                                                                               ttCCTCGCCAACCCGCAGTACCGCAAGTACCTGGATAACAGCCAGGCCGGCGCGGTGCTGCTCAAgg                                                                                                     >  6:20350/1‑67 (MQ=255)                                                                                                                               ttCCTCGCCAACCCGCAGTACCGCAAGTACCTGGATAACAGCCAGGCCGGCGCGGTGCTGCTCAAgg                                                                                                     <  5:20350/67‑1 (MQ=255)                                                                                                                               ttCCTCGCCAACCCGCAGTACCGCAAGTACCTGGATAACAGCCAGGCCGGCGCGGTGCTGCTCAAGGCTGCGGATGCCGAAAGCTTTGCCGGCAATACCCTGGTCGTgg                                                           >  4:4462/1‑109 (MQ=255)                                                                                                                               ttCCTCGCCAACCCGCAGTACCGCAAGTACCTGGATAACAGCCAGGCCGGCGCGGTGCTGCTCAAGGCTGCGGATGCCGAAAGCTTTGCCGGCAATACCCTGGTCGTgg                                                           <  3:4462/109‑1 (MQ=255)                                                                                                                                   tCGCCAACCCGCAGTACCGCAAGTACCTGGATAACAGCCAGGCCGGCGCGGTGCTGCTCAAGGCTGCGGATGCCGAAAGCTTTGCCGGCAATACCCTGGTCGTGGCGGACCCGTACCTGGCTTAcgc                                     <  4:289848/127‑1 (MQ=255)                                                                                                                                   tCGCCAACCCGCAGTACCGCAAGTACCTGGATAACAGCCAGGCCGGCGCGGTGCTGCTCAAGGCTGCGGATGCCGAAAGCTTTGCCGGCAATACCCTGGTCGTGGCGGACCCGTACCTGGCTTAcgc                                     >  3:289848/1‑127 (MQ=255)                                                                                                                                     gCCAACCCGCAGTACCGCAAGTACCTGGATAACAGCCAGGCCGGCGCGGTGCTGCTCAAGGCTGCGGATGCCGAAAGCTTTGCCGGCAATACCCTGGTCGTGGCGGACCCGTACCTGGCTTACGCGCGAATTTCCCACCTGTTCGATc              <  5:58287/148‑1 (MQ=255)                                                                                                                                     gCCAACCCGCAGTACCGCAAGTACCGGGATAACAGCCAGGCCGGCGCGGTGCTGCTCAAGGCTGCGGATGCCGAAAGCTTTGCCGGCAATACCCTGGTCGTGGCGGACCCGTACCTGGCTTACGCGCGAATTTCCCACCTGTTCGATcc             <  8:8462/149‑1 (MQ=255)                                                                                                                                             gCAGTACCGCAAGTACCTGGATAACAGCCAGGCCGGCGCGGTGctgcgggttggcgaggaagctcaactgcgtcgggccagcctcctgcaaggtggccaacccggtaatctgcagcgcctcgggccccttgagggtagctccgagtacc     <  2:191887‑M2/149‑107 (MQ=255)                                                                                                                                             gCAGTACCGCAAGTACCTGGATAACAGCCAGGCCGGCGCGGTGCTGCTCAAGGCTGCGGATGCCGAAAGCTTTGCCGGCAATACCCTGGTCGTGGCGGACCCGTACCTGGCTTACGCGCGAATTTCCCACCTGTTCGATCCCAAACCCa     <  5:206911/149‑1 (MQ=255)                                                                                                                                               agcaccgcgccggcctggctgttatccaggtacttgcggtactgcgggttggcgaggaagctcaactgcgtcgggccagcctcctgcaaggtggccaacccggtaatctgcagcgcctcgggccccttgagggtagctccgagtacctc   <  3:198863‑M1/149‑148 (MQ=255)                                                                                                                                                gcaccgcgccggcctggctgttatccaggtacttgcggtactgcgggttggcgaggaagctcaactgcgtcgggccagcctcctgcaaggtggccaacccggtaatctgcagcgcctcgggccccttgagggtagctccgagtacctcg  <  3:297274‑M1/149‑149 (MQ=255)                                                                                                                                                |                                                                                                                                                     ATATGAGTGTGACCATGACGCTAGGCCAGCTGGCCGAGGTACTCGGAGCTACCCTCAAGGGGCCCGAGGCGCTGCAGATTACCGGGTTGGCCACCTTGCAGGAGGCTGGC‑CCGACGCAGTTGAGCTTCCTCGCCAACCCGCAGTACCGCAAGTACCTGGATAACAGCCAGGCCGGCGCGGTGCTGCTCAAGGCTGCGGATGCCGAAAGCTTTGCCGGCAATACCCTGGTCGTGGCGGACCCGTACCTGGCTTACGCGCGAATTTCCCACCTGTTCGATCCCAAACCCAAGG  >  NC_002947/1795691‑1795981

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.