New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 1885679	44 (0.900)	4 (0.090)	3/248	NT	8.5%	coding (346/1488 nt)	rmuC	DNA recombination limiting inversions protein
	?	NC_002947	= 1885705	45 (0.970)					coding (372/1488 nt)	rmuC	DNA recombination limiting inversions protein

GTCAGCGACCTCAGTGAGGCCAACGCCGTCAAGCAGGCCCAGTTGGCCGCCCAAAGCC‑GTGAGCTGGAGCTGCTGCAGATCGATCGCGACAACGCCCGTGATGCCGCCCACGCCTGGAGCCTTGAGCGCGCCAATCGCGAAGCCGAACTGCGTC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/1885526‑1885679 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctgcgtcCAGGCGCGCGGTTTGCGCCTCCAGGCGACGCAGTTCGGCTTCGCGATTGGCGCGCTCAAGGCTCCAGGCGTGGGCGGCATCACGGGCGTTGTCGCGATCGATCTGCAGCAGCTCCAGCTCACGGCTTTGGGCGGCCAACTGGGC  <  NC_002947/1885705‑1885562                                                                                                                                                                                                                                                                                                             GTCAGCGACCTCAGTGAGGCCAACGCCGTCAAGCAGGCCCAGTTGGCCGCCCAAAGCC‑GTGAGCTGGAGCTGCTGCAGATCGATCGCGACAACGCCCGTGATGCCGCCCACGCCTGGAGCCTTGAGCGCGCCAATCGCGAAGCCGAAC                                                                                                                                                        <  6:195157/148‑1   CAGCGACCTCAGTGAGGCCAACGCCGTAAAGCAGGCCCAGTTGGCCGCCCAAAGCCGGGGAGCTGGAGCTGCTGCAGAAAGATCGCCACAACGCCCGTGATGCCGCCCACGCCTGGAGCCATGAGCCCGCCAATAGCGAAGCCGAACTG                                                                                                                                                      >  1:238303/1‑149    AGCGACCTCAGTGAGGCCAACGCCGTCAAGCAGGCCCAGTTGGCCGCCCAAAGCC‑GTGAGCTGGAGCTGCTGCAGATCGATCGCGACAACGCCCGTGATGCCGCCCACGCCTGGAGCCTTGAGCGCGCCAATCGCGAAGCCGAACTGCG                                                                                                                                                    >  4:178349/1‑149      CGACCTCAGTGAGGCCAACGACGTCAAGCAGGCCCAGTTGGCCGCCCAAAGCC‑GTGAGCTGGAGCTGCTGCAGATCGATCGCGACAACGCCCGTGATGCCGCCCACGCCTGGAGCCTTGAGCGCGCCAATCGCGAAGCCGAACTGCGTC                                                                                                                                                  >  4:109094/1‑149                                         AGTTGGCCGCCCAAAGCC‑GTGAGCTGGAGCTGCTGCAGATCGATCGCGACAACGCCCGTGATGCCGCCCACGCCTGGAGCCTTGAGCGCGCCAATCGCGAAGCCGAACTGCGTCCAGGCGCGCGGTTTGCGCCTCCAGGCGACGCAGTT                                                                                                               <  7:249497/149‑1                                          GTTTGCCGCCCAAAGCC‑GTGAGCTGGAGCTGCTGCAGATCGATCGCGACAACGCCCGTGATGCCGCCCACGCCTGGAGCCTTGAGCGCGCCAATCGCGAAGCCGAACTGCGTCCAGGCGCTCGGTTTGCGCCTCCAGGCGACGCAGTTC                                                                                                              <  5:301745/149‑1                                                    CAAAGCC‑GTGAGCTGGAGCTGCTGCAGATCGATCGCGACAACGCCCGTGATGCCGCCCACGCCTGGAGCCTTGAGCGCGCCAATCGCGAAGCCGAACTGCGTCCAGGCGCGCGGTTTGCGCCTCCAGGCGACGCAGTTC                                                                                                              <  1:295651/139‑1                                                    CAAAGCC‑GTGAGCTGGAGCTGCTGCAGATCGATCGCGACAACGCCCGTGATGCCGCCCACGCCTGGAGCCTTGAGCGCGCCAATCGCGAAGCCGAACTGCGTCCAGGCGCGCGGTTTGCGCCTCCAGGCGACGCAGTTC                                                                                                              >  2:295651/1‑139                                                                                                                                                       GCGTCCAGGCGCGCGGTTTGCGCCTCCAGGCGACGCAGTTCGGCTTCGCGATTGGCGCGCTCAAGGCTCCAGGCGTGGGCGGCATCACGGGCGTTGTCGCGATCGATCTGCAGCAGCTCCAGCTCACGGCTTTGGGCGGCCAACTGGGC  >  3:109094/1‑149                                                                                                                                                                                                                                                                                                             GTCAGCGACCTCAGTGAGGCCAACGCCGTCAAGCAGGCCCAGTTGGCCGCCCAAAGCC‑GTGAGCTGGAGCTGCTGCAGATCGATCGCGACAACGCCCGTGATGCCGCCCACGCCTGGAGCCTTGAGCGCGCCAATCGCGAAGCCGAACTGCGTC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/1885526‑1885679 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctgcgtcCAGGCGCGCGGTTTGCGCCTCCAGGCGACGCAGTTCGGCTTCGCGATTGGCGCGCTCAAGGCTCCAGGCGTGGGCGGCATCACGGGCGTTGTCGCGATCGATCTGCAGCAGCTCCAGCTCACGGCTTTGGGCGGCCAACTGGGC  <  NC_002947/1885705‑1885562

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.