| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 1885679 | 44 (0.900) | 4 (0.090) | 3/248 | NT | 8.5% | coding (346/1488 nt) | rmuC | DNA recombination limiting inversions protein |
| ? | NC_002947 | = 1885705 | 45 (0.970) | coding (372/1488 nt) | rmuC | DNA recombination limiting inversions protein | |||||
CGACCTCAGTGAGGCCAACGCCGTCAAGCAGGCCCAGTTGGCCGCCCAAAGCCGTGAGCTGGAGCTGCTGCAGATCGATCGCGACAACGCCCGTGATGCCGCCCACGCCTGGAGCCTTGAGCGCGCCAATCGCGAAGCCGAACTG‑‑CGTCGCCTGGAGGCGCAAACCGCGCGCCTGGACGCAGAGCTGCGTGAACAGCAGGAAAGCCACCAGCAACGCCTGGAAGACCTGCAGGAGGCCCGTGACACCTTGCGCGCCCAGTTCGCCGACATGGCCACCAAGATTTTCGACGAACGC > NC_002947/1885531‑1885825 | cGACCTCAGTGAGGCCAACGACGTCAAGCAGGCCCAGTTGGCCGCCCAAAGCCGTGAGCTGGAGCTGCTGCAGATCGATCGCGACAACGCCCGTGATGCCGCCCACGCCTGGAGCCTTGAGCGCGCCAATCGCGAAGCCGAACTG‑‑CGTC > 4:109094‑M1/1‑149 (MQ=255) cTCAGTGAGGCCAACGCCGTCAAGCAGGCACAGTTGGCCGCCCAAAGCCGTGAGCTGGAGCTGCTGCAGATCGATCGCGACAACGCCCGTGATGCCGCCCACGCCTGGAGCCTTGAGCGCGCCAATCGCGAAGCCGAACTG‑‑CGTCGCCt < 5:64699/149‑1 (MQ=255) aGGCCAACGCCGTCAAGCAGGCCCAGTTGGCCGCCCAAAGCCGTGAGCTGGAGCTGCTGCAGATCGATCGCGACAACGCCCGTGATGCCGCCCACGCCTGGAGCCTTGAGCGCGCCAATCGCGAAGCCGAACTG‑‑CGTCGCCTGGAGgc < 7:267760/148‑1 (MQ=255) aGGCCAACGCCGTCAAGCAGGCCCAGTTGGCCGCCCAAAGCCGTGAGCTGGAGCTGCTGCAGATCGATCGCGACAACGCCCGTGATGCCGCCCACGCCTGGAGCCTTGAGCGCGCCAATCGCGAAGCCGAACTG‑‑CGTCGCCTGGAGgc < 1:213098/148‑1 (MQ=255) ggCCAACGCCGTCAAGCAGGCCCAGTTGGCCGCCCAAAGCCGTGAGCTGGAGCTGCTGCAGATCGATCGCGACAACGCCCGTGATGCCGCCCACGCCTGGAGCCTTGAGCGCGCCAATCGCGAAGCCGAACTG‑‑CGTCGCCTGGAGgcg < 3:178349/148‑1 (MQ=255) gCCAACGCCGTCAAGCAGGCGCAGTTGGCCGCCCAAAGCCGTGAGCTGGAGCTGCTGCAGATCGATCGCGACAACGCCCGTGATGCCGCCCACGCCTGGAGCCTTGAGCGCGCCAATCGCGAAGCCGATCTG‑‑CGTCGCCTGGAGgcgc < 2:238303/148‑1 (MQ=255) cAACGCCGTCAAGCAGGCCCAGTTGGCCGCCCAAAGCCGTGAGCTGGAGCTGCTGCAGATCGATCGCGACAACGCCCGTGATGCCGCCCACGCCTGGAGCCTTGAGCGCGCCAATCGCGAAGCCGAACTG‑‑CGTCGCCTGGAGGCGCaaa < 7:187223/149‑1 (MQ=255) aaCGCCGTCAAGCAGGCCCAGTTGGCCGCCCAAAGCCGTGAGCTGGAGCTGCTGCAGATCGATCGCGACAACGCCCGTGATGCCGCCCACGCCTGGAGCCTTGAGCGCGCCAATCGCGAAGCCGAACTG‑‑CGTCGCCTGGAGGCGCAAAc > 4:116320/1‑149 (MQ=255) cAAGCAGGCCCAGTTGGCCGCCCAAAGCCGTGAGCTGGAGCTGCTGCAGATCGATCGCGACAACGCCCGTGATGCCGCCCACGCCTGGAGCCTTGAGCGCGCCAATCGCGAAGCCGAACTG‑‑CGTCGCCTGGAGGCGCAAACCGCGCGcc > 7:279033/1‑149 (MQ=255) aaGCAGGCCCAGTTGGCCGCCCAAAGCCGTGAGCTGGAGCTGCTGCAGATCGATCGCGACAACGCCCGTGATGCCGCCCACGCCTGGAGCCTTGAGCGCGCCAATCGCGAAGCCGAACTG‑‑CGTCGCCTGGAGGCGCAAACCGCGCGCCt < 4:187915/149‑1 (MQ=255) gCAGGCCCAGTTGGCCGCCCAAAGCCGTGAGCTGGAGCTGCTGCAGATCGATCGCGACAACGCCCGTGATGCCGCCCACGCCTGGAGCCTTGAGCGCGCCAATCGCGAAGCCGAACTG‑‑CGTCGCCTGGAGGCGCAAACCGCGCGCCTg > 7:114146/1‑148 (MQ=255) cAGGCCCAGTTGGCCGCCCAAAGCCGTGAGCTGGAGCTGCTGCAGATCGATCGCGACAACGCCCGTGATGCCGCCCACGCCTGGAGCCTTGAGCGCGCCAATCGCGAAGCCGAACTG‑‑CGTCGCCTGGAGGCGCAAACCGCGCGCCTg > 7:187389/1‑147 (MQ=255) cAGGCCCAGTTGGCCGCCCAAAGCCGTGAGCTGGAGCTGCTGCAGATCGATCGCGACAACGCCCGTGATGCCGCCCACGCCTGGAGCCTTGAGCGCGCCAATCGCGAAGCCGAACTG‑‑CGTCGCCTGGAGGCGCAAACCGCGCGCCTg < 8:187389/147‑1 (MQ=255) gCCCAGTTGGCCGCCCAAAGCCGTGAGCTGGAGCTGCTGCAGATCGATCGCGACAACGCCCGTGATGCCGCCCACGCCTGGAGCCTTGAGCGCGCCAATCGCGAAGCCGAACTG‑‑CGTCGCCTGGAGGCGCAAACCGCGCGCCTGgacgc > 3:109094‑M2/1‑144 (MQ=255) aGTTGGCCGCCCAAAGCCGTGAGCTGGAGCTGCTGCAGATCGATCGCGACAACGCCCGTGATGCCGCCCACGCCTGGAGCCTTGAGCGCGCCAATCGCGAAGCCGAACTG‑‑CGTCcaggcgcgcggtttgcgcctccaggcgacgcagtt < 7:249497‑M1/149‑36 (MQ=255) gTTTGCCGCCCAAAGCCGTGAGCTGGAGCTGCTGCAGATCGATCGCGACAACGCCCGTGATGCCGCCCACGCCTGGAGCCTTGAGCGCGCCAATCGCGAAGCCGAACTG‑‑CGTCcaggcgctcggtttgcgcctccaggcgacgcagttc < 5:301745‑M1/149‑37 (MQ=255) ccgccCAAAGCCGTGAGCTGGAGCTGCTGCAGATCGATCGCGACAACGCCCGTGATGCCGCCCACGCCTGGAGCCTTGAGCGCGCCAATCGCGAAGCCGAACTG‑‑CGTCGCCTGGAGGCGCAAACCGCGCGCCTGGACGCAGAGCTGCGt < 3:116320/149‑1 (MQ=255) cAAAGCCGTGAGCTGGAGCTGCTGCAGATCGATCGCGACAACGCCCGTGATGCCGCCCACGCCTGGAGCCTTGAGCGCGCCAATCGCGAAGCCGAACTG‑‑CGTCcaggcgcgcggtttgcgcctccaggcgacgcagttc > 2:295651‑M1/1‑103 (MQ=255) cAAAGCCGTGAGCTGGAGCTGCTGCAGATCGATCGCGACAACGCCCGTGATGCCGCCCACGCCTGGAGCCTTGAGCGCGCCAATCGCGAAGCCGAACTG‑‑CGTCcaggcgcgcggtttgcgcctccaggcgacgcagttc < 1:295651‑M1/139‑37 (MQ=255) gTGAGCTGGAGCTGCTGCAGATCGATCGCGACAACGCCCGTGATGCCGCCCACGCCTGGAGCCTTGAGCGCGCCAATCGCGAAGCCGAACTG‑‑CGTCGCCTGGAGGCGCAAACCGCGCGCCTGGACGCAGAGCTGCGTGAACAGCAGGa > 1:191368/1‑148 (MQ=255) tggagctgCTGCAGATCGATCGCGACAACGCCCGTGATGCCGCCCACGCCTGGAGCCTTGAGCGCGCCAATCGCGAAGCCGAACTG‑‑CGTCGCCTGGAGGCGCAAACCGCGCGCCTGGACGCAGAGCTGCGTGAACAGCAGGAAAGccac < 8:114146/149‑1 (MQ=255) gctgcAGATCGATCGCGACAACGCCCGTGATGCCGCCCACGCCTGGAGCCTTGAGCGCGCCAATCGCGAAGCCGAACTG‑‑CGTCGCCTGGAGGCGCAAACCGCGCGCCTGGACGCAGAGCTGCGTGAACAGCAGGAAAGCCACCAGCAAc > 6:7461/1‑149 (MQ=255) tcgatcgCGACAACGCCCGTGATGCCGCCCACGCCTGGAGCCTTGAGCGCGCCAATCGCGAAGCCGAACTG‑‑CGTCGCCTGGAGGCGCAAACCGCGCGCCTGGACGCAGAGCTGCGTGAACAGCAGGAAAGCCACCAGCAACGCCTGGaa < 2:191368/149‑1 (MQ=255) tcgatcgCGACAACGCCCGCGATGCCGCCCACGCCTGGAGCCTTGAGCGCGCCAATCGCGAAGCCGAACTG‑‑CGTCGCCTGGAGGCGCAAACCGCGCGCCTGGACGCAGAGCTGCGTGAACAGCAGGAAAGCCACCAGCAACGCCTGGaa < 4:88125/149‑1 (MQ=255) cgatcgCGACAACGCCCGTGATGCCGCCCACGCCTGGAGCCTTGAGCGCGCCAATCGCGAAGCCGAACTG‑‑CGTCGCCTGGAGGCGCAAACCGCGCGCCTGGACGCAGAGCTGCGTGAACAGCAGGAAAGCCACCAGCAACGCCTgg > 6:307034/1‑146 (MQ=255) atcgCGACAACGCCCGTGATGCCGCCCACGCCTGGAGCCTTGAGCGCGCCAATCGCGAAGCCGAACTGTACGACCCCTGGAGCCCCAAACCCCGCCCATGGACGCACACCTCCGTGAACAGCAGGAAAGCCACCACCACCGCATgg > 1:95674/1‑146 (MQ=255) atcgCGACAACGCCCGTGATGCCGCCCACGCCTGGAGCCTTGAGCGCGCCAATCGCGAAGCCGAACTG‑‑CGTCGCCTGGAGGCGCAAACCGCGCGCCTGGACGCAGAGCTGCGTGAACAGCAGGAAAGCCACCAGCAACGCCTGGAAGAc > 1:151117/1‑149 (MQ=255) atcgCGACAACGCCCGTGATGCCGCCCACGCCTGGAGCCTTGAGCGCGCCAATCGCGAAGCCGAACTG‑‑CGTCGCCTGGAGGCGCAAACCGCGCGCCTGGACGCAGAGCTGCGTGAACAGCAGGAAAGCCACCAGCAACGCCTGGAAGAc > 5:64359/1‑149 (MQ=255) ccGTGATGCCGCCCACGCCTGGAGCCTTGAGCGCGCCAATCGCGAAGCCGAACTG‑‑CGTCGCCTGGAGGCGCAAACCGCGCGCCTGGACGCAGAGCTGCGTGAACAGCAGGAAAGccacc > 5:104064/1‑119 (MQ=255) ccGTGATGCCGCCCACGCCTGGAGCCTTGAGCGCGCCAATCGCGAAGCCGAACTG‑‑CGTCGCCTGGAGGCGCAAACCGCGCGCCTGGACGCAGAGCTGCGTGAACAGCAGGAAAGccacc < 6:104064/119‑1 (MQ=255) ccGTAATGCCGCCCACGCCTGGAGCCTTGAGCGCGCCAATCGCGAAGCCGAACTG‑‑CGTCGCCTGGAGGCGCAAACCGCGCGCCTGGACGCAGAGCTGCGTGAACAGCAGGAAAGCCACCAGCAACGCCTGGAAGACCTGCAGGAGGccc < 8:204747/149‑1 (MQ=255) gTGATGCCGCCCACGCCTGGAGCCTTGAGCGCGCCAATCGCGAAGCCGAACTG‑‑TGTCGCCTGGAGGCGCAAACCGCGCGCCTGGACGCAGAGCTGCGTGAACAGCAGGAAAGCCACCAGCAACGCCTGGAAGACCTGCAGGAGGCCCGt < 5:307034/149‑1 (MQ=255) gTGATGCCGCCCACGCCTGGAGCCTTGAGCGCGCCAATCGCGAAGCCGAACTG‑‑CGTCGCCTGGAGGCGCAAACCGCGCGCCTGGACGCAGAGCTGCGTGAACAGCAGGAAAGCCACCAGCAACGCCTGGAAGACCTGCAGGAGGCCCGt > 4:42869/1‑149 (MQ=255) aTGCCGCCCATGCCTGGAGCCTTGAGCGCGCCAATCGCGAAGCCGAACTG‑‑CGTCGCCTGGAGGCGCAAACCGCGCGCCTGGACGCAGAGCTGCGTGAACAGCAGGAAAGCCACCAGCAACGCCTGGAAGACCTGCAGGAGGCCCGTGa < 2:256662/148‑1 (MQ=255) ccgccCACGCCTGGAGCCTTGAGCGCGCCAATCGCGAAGCCGAACTG‑‑CGTCGCCTGGAGGCGCAAACCGCGCGCCTGGACGCAGAGCTGCGTGAACAGCAGGAAAGCCACCAGCAACGCCTGGAAGACCt < 3:165245/130‑1 (MQ=255) ccgccCACGCCTGGAGCCTTGAGCGCGCCAATCGCGAAGCCGAACTG‑‑CGTCGCCTGGAGGCGCAAACCGCGCGCCTGGACGCAGAGCTGCGTGAACAGCAGGAAAGCCACCAGCAACGCCTGGAAGACCt > 4:165245/1‑130 (MQ=255) ccgccCACGCCTGGAGCCTTGAGCGCGCCAATCGCGAAGCCGAACTG‑‑CGTCGCCTGGAGGCGCAAACCGCGCGCCTGGACGCAGAGCTGCGTGAACAGCAGGAAAGCCACCAGCAACGCCTGGAAGACCTGCAGGAGGCCCGTGACAcc > 8:83480/1‑149 (MQ=255) gccCACGCCTGGAGCCTTGAGCGCGCCAATCGCGAAGCCGAACTG‑‑CGTCGCCTGGAGGCGCAAACCGCGCGCCTGGACGCAGAGCTGCGTGAACAGCAGGAAAGCCACCAGCAACGCCTGGAAGACCTGCAGGAGGCCCGTGACACCtt > 2:278659/1‑149 (MQ=255) ccACGCCTGGAGCCTTGAGCGCGCCAATCGCGAAGCCGAACTG‑‑CGTCGCCTGGAGGCGCAAACCGCGCGCCTGGACGCAGAGCTGCGTGAACAGCAGGAAAGCCACCAGCAACGCCTGGAAGACCTGCAGGAGGCCCGTGACACCTTgc < 7:83480/149‑1 (MQ=255) cTTGAGCGCGCCAATCGCGAAGCCGAACTG‑‑CGTCGCCTGGAGGCGCAAACCTCGCGCCTGGACGCAGAGCTGCGTGAACAGCAGGAAAGCCACCAGCAACGCCTGGAAGACCTGCAGGAGGCCCGTGACACCTTGCGCGCCCAGTTCGc < 4:179681/149‑1 (MQ=255) ttGAGCGCGCCAATCGCGAAGCCGAACTG‑‑CGTCGCCTGGAGGCGCAAACCGCGCGCCTGGACGCAGAGCTGCGTGAACAGCAGGAAAGCCACCAGCAACGCCTGGAAGACCTGCAGGAGGCCCGTGACACCTTGCGCGCCCAGTTCGcc > 2:35302/1‑149 (MQ=255) gcgcCAATCGCGAAGCCGAACTG‑‑CGTCGCCTGGAGGCGCAAACCGCGCGCCTGGACGCAGAGCTGCGTGAACAGCAGGAAAGCCACCAGCAACGCCTGGAAGACCTGCAGGAGGCCCGTGACACCTTGCGCGCCCAGTTCGCCGACATg < 6:64359/149‑1 (MQ=255) gcCAATCGCGAAGCCGAACTG‑‑CGTCGCCTGGAGGCGCAAACCGCGCGCCTGGACGCAGAGCTGCGTGAACAGCAGGAAAGCCACCAGCAACGCCTGGAAGACCTGCAGGAGGCCCGTGACACCTTgcgc < 8:122949/129‑1 (MQ=255) gcCAATCGCGAAGCCGAACTG‑‑CGTCGCCTGGAGGCGCAAACCGCGCGCCTGGACGCAGAGCTGCGTGAACAGCAGGAAAGCCACCAGCAACGCCTGGAAGACCTGCAGGAGGCCCGTGACACCTTgcgc > 7:122949/1‑129 (MQ=255) ccAATCGCGAAGCCGAACTG‑‑CGTCGCCTGGAGGCGCAAACCGCGCGCCTGGACGCAGAGCTGCGTGAACAGCAGGAAAGCCATCAGCAACGCCTGGAAGACCTGCAGGAGGCCCGTGACACCTTGCGCGCCCAGTTCGCCGACATGGcc < 8:279033/149‑1 (MQ=255) aTCGCGAAGCCGAACTG‑‑CGTCGCCTGGAGGCGCAAACCGCGCGCCTGGACGCAGAGCTGCGTGAACAGCAGGAAAGCCACCAGCAACGCCTGGAAGACCTGCAGGAGGCCCGTGACACCTTGCGCGCCCAGTTCGCCGACATGGccac > 6:94479/1‑148 (MQ=255) gcgAAGCCGAACTG‑‑CGTCGCCTGGAGGCGCAAACCGCGCGCCTGGACGCAGAGCTGCGTGAACAGCAGGAAAGCCACCAGCAACGCCTGGAAGACCTGCAGGAGGCCCGTGACACCTTGCGCGCCCAGTTCGCCGACATGGCCACCAAg < 2:95674/149‑1 (MQ=255) gAAGCCGAACTG‑‑CGTCGCCTGGAGGCGCAAACCGCGCGCCTGGACGCAGAGCTGCGTGAACAGCAGGAAAGCCACCAGCAACGCCTGGAAGACCTGCAGGAGGCCCGTGACACCTTGCGCGCCCAGTTCGCCGCCATGGCCACCAAGAt > 8:85793/1‑149 (MQ=255) cGAACTG‑‑CGTCGCCTGGAGGCGCAAACCGCGCGCCTGGACGCAGAGCTGCGTGAACAGCAGGAAAGCCACCAGCAACGCCTGGAAGACCTGCAGGAGGCCCGTGACACCTTGCGCGCCCAGTTCGCCGACATGGCCACCAAGATTTTc > 8:217106/1‑148 (MQ=255) gAACTG‑‑CGTCGCCTGGAGGCGCAAACCGCGCGCCTGgacgcagttcggcttcgcgattggcgcgctcaaggctccaggcgtgggcggcatcacgggcgttgtcgcgatcgatctgcagcagctccagctcacggctttg > 2:295651‑M2/1‑36 (MQ=255) gAACTG‑‑CGTCGCCTGGAGGCGCAAACCGCGCGCCTGgacgcagttcggcttcgcgattggcgcgctcaaggctccaggcgtgggcggcatcacgggcgttgtcgcgatcgatctgcagcagctccagctcacggctttg < 1:295651‑M2/139‑104 (MQ=255) gAACTG‑‑CGTCGCCTGGAGGCGCAAACCGCGCGCCTGGACGCAGAGCTGCGTGAACAGCAGGAAAGCCACCAGCAACGCCTGGAAGACCTGCAGGAGGCCCGTGACACCTTGCGCGCCCAGTTCGCCGACATGGCCACCAAGATTTTcga < 7:217106/149‑1 (MQ=255) gAACTG‑‑CGTCGCCTGGAGGCGCAAACCGAGCGCCTGgacgcagttcggcttcgcgattggcgcgctcaaggctccaggcgtgggcggcatcacgggcgttgtcgcgatcgatctgcagcagctccagctcacggctttgggcggcaaac < 5:301745‑M2/149‑114 (MQ=255) aaCTG‑‑CGTCGCCTGGAGGCGCAAACCGCGCGCCTGgacgcagttcggcttcgcgattggcgcgctcaaggctccaggcgtgggcggcatcacgggcgttgtcgcgatcgatctgcagcagctccagctcacggctttgggcggccaact < 7:249497‑M2/149‑115 (MQ=255) tG‑‑CGTCGCCTGGAGGCGCAAACCGCGCGCCTGGACGCAGAGCTGCGTGAACAGCAGGAAAGCCACCAGCAACGCCTGGAAGACCTGCAGGAGGCCCGTGACACCTTGCGCGCCCAGTTCGCCGACATGGCCACCAAGATTTTCGACGaa > 1:269177/1‑149 (MQ=255) g‑‑CGTCcaggcgcgcggtttgcgcctccaggcgacgcagttcggcttcgcgattggcgcgctcaaggctccaggcgtgggcggcatcacgggcgttgtcgcgatcgatctgcagcagctccagctcacggctttgggcggccaactgggc > 3:109094‑M1/1‑5 (MQ=255) tCGCCTGTAGGCGAAAACCGCGCGCCTGGACGCAGATATTAGTGAACATCAGGAAAGACACAAGCAACGCATGGAAGACCTGCAGGAGGCACGTGAAACATTGAGCGCCAAGTTAGCCTACATGGCCACCAAGATATTCGACTAActc > 4:197188/1‑146 (MQ=255) tCGCCTGGAGGCGCAAACCGCGCGCCTGGACGCAGAGCTGCGTGAACAGCAGGAAAGCCACCAGCAACGCCTGGAAGACCTGCAGGAGGCCCGTGACACCTTGCGCGCCCAGTTCGCCGACATGGCCACCAAGATTTTCGACGAAcgc > 5:140026/1‑148 (MQ=255) | CGACCTCAGTGAGGCCAACGCCGTCAAGCAGGCCCAGTTGGCCGCCCAAAGCCGTGAGCTGGAGCTGCTGCAGATCGATCGCGACAACGCCCGTGATGCCGCCCACGCCTGGAGCCTTGAGCGCGCCAATCGCGAAGCCGAACTG‑‑CGTCGCCTGGAGGCGCAAACCGCGCGCCTGGACGCAGAGCTGCGTGAACAGCAGGAAAGCCACCAGCAACGCCTGGAAGACCTGCAGGAGGCCCGTGACACCTTGCGCGCCCAGTTCGCCGACATGGCCACCAAGATTTTCGACGAACGC > NC_002947/1885531‑1885825 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |