New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	2018588 =	49 (1.000)	4 (0.090)	4/244	NT	9.1%	intergenic (‑2196/‑138)	PP_1795/PP_1797	hypothetical protein/HlyD family secretion protein
	?	NC_002947	2018627 =	34 (0.750)					intergenic (‑2235/‑99)	PP_1795/PP_1797	hypothetical protein/HlyD family secretion protein

GATTGCTTTACTGCTCATCTAGAAATCCTTTCAGGCGCCAGTACTGGTGGCAGGCGCAACGGCCGCGGGCGCAGAGGGTGCAACTGGCGGGGTAGCGGGGGCCTGCGGGCTCGCAGCCTGGCTGCCGCGCTGAAGCTTGGCCTGCTGGGCAGCCAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/2018743‑2018588 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcagccagGCTGCGAGCCCGCAGGCCCCCGCTACCCCGCCAGTTGCACCCTCTGCGCCCGCGGCCGTTGCGCCTGCCACCAGTACTGGCGCCTGAAAGGATTTCTAGATGAGCAGTAAAGCAATCACTACGTTCGACCACAATTTCGACGACCTG  >  NC_002947/2018627‑2018773                                                                                                                                                                                                                                                                                                                 GATTGCTTTACTGCTCATCTAGAAATCCTTTCAGGCGCCAGTACTGGTGGCAGGCGCAACGGCCGCGGGCGCAGAGGGTGCAACTGGCGGGGTAGCGGGGGCCTGCGGGCTCGCAGCCTGGCTGCCGCGCTGAAGCTTGGCCTGCTGGG                                                                                                                                                            >  3:108345/1‑149  ATTGCTTTACTGCTCATCTAGAAATCCTTTCAGGCGCCAGTACTGGTGGCAGGCGCAACGGCCGCGGGCGCAGAGGGTGCAACTGGCGGGGTAGCGGGGGCCTGCGGGCTCGCAGCCTGGCTGCCGCGCTGAAGCTTGGCCTGCTGGG                                                                                                                                                            >  4:203573/1‑148     GCTTTACTGCTCATCTAGAAATCCTTTCAGGCGCCAGTACTGGTGGCAGGCGCAACGGCCGCGGGCGCAGAGGGTGCAACTGGCGGGGTAGCGGGGGCCTGCGGGCTCGCAGCCTGGCTGCCGCGCTGAAGCTTGGCCTGCTGGGCAGC                                                                                                                                                        >  8:184316/1‑149      CTTTACTGCTCATCTAGAAATCCTTTCAGGCGCCAGTACTGGTGGCAGGCGCAACGGCCGCGGGCGCAGAGGGTGCAACTGGCGGGGTAGCGGGGGCCTGCGGGCTCGCAGCCTGGCTGCCGCGCTGAAGCTTGGCCTGCTGGGCAGCC                                                                                                                                                       <  1:155447/149‑1                                                                                                                CGCAGCCTGGCTGCCGCGCTGAAGCTTGGCCTGCTGGGCAGCCAGGCTGCGAGCCCGCAGGCCCCCGCTACCCCGCCAGTTGCACCCTCTGCGCCCGCGGCCGTTGCGCCTGCCACCAGTACTGGCGCCTGAAAGGATTTCTAGATGAG                                             >  2:44749/1‑149                                                                                                                       TGGCTGCCGCGCTGAAGCTTGGCCTGCTGGGCAGCCAGGCTGCGAGCCCGCAGGCCCCCGCTACCCCGCCAGTTGCACCCTCTGCGCCCGCGGCCGTTTCGCCTGCCACCAGTACTGGCGCCTGAAA                                                            <  7:122366/127‑1                                                                                                                       TGGCTGCCGCGCTGAAGCTTGGCCTGCTGGGCAGCCAGGCTGCGAGCCCGCAGGCCCCCGCTACCCCGCCAGTTGCACCCTCTGCGCCCGCGGCCGTTGCGCCTGCCACCAGTACTGGCGCCTGAAA                                                            >  8:122366/1‑127                                                                                                                                      AGCTTGGCCTGCTGGGCAGCCAGGCTGCGAGCCCGCAGGCCCCCGCTACCCCGCCAGTTGCACCCTCTGCGCCCGCGGCCGTTGCGCCTGCCACCAGTACTGGCGCCTGAAAGGATTTCTAGATGAGCAGTAAAGCAATCACTACGTTC                       <  1:44749/149‑1                                                                                                                                                    GGCAGCCAGGCTGCGAGCCCGCAGGCCCCCGCTACCCCGCCAGTTGCACCCTCTGCGCCCGCGGCCGTTGCGCCTGCCACCAGTACTGGCGCCTGAAAGGATTTCTAGATGAGCAGTAAAGCAATCACTACGTTCGACCACAATTTCGA         <  1:178291/149‑1                                                                                                                                                        GCCAGGCTGCGAGCCCGCAGGCCCCCGCTACCCCGCCAGTTGCACCCTCTGCGCCCGCGGCCGTTGCGCCTGCCACCAGTACTGGCGCCTGAAAGGATTTCTAGATGAGCAGTAAAGCAATCACTACGTTCGACCACAATTTCGACGAC     <  6:39316/149‑1                                                                                                                                                         CCAGGCTGCGAGCCCGCAGGCCCCCGCTACCCCGCCAGTTGCACCCTCTGCGCCCGCGGCCGTTGCGCCTGCCACCAGTACTGGCGCCTGAAAGGATTTCTAGATGAGCAGTAAAGCAATCACTACGTTCGACCACAATTTCGACGACC    >  3:245757/1‑149                                                                                                                                                          CAGGCTGCGAGCCCGCAGGCCCCCGCTACCCCGCCAGTTGCACCCTCTGCGCCCGCGGCCGTTGCGCCTGCCACCAGTACTGGCGCCTGAAAGGATTTCTAGATGAGCAGTAAAGCAATCACTACGTTCGACCACAATTTCGACGACCT   >  4:201170/1‑149                                                                                                                                                           AGGCTGCGAGCCCGCAGGCCCCCGCTACCCCGCCAGTTGCACCCTCTGCGCCCGCGGCCGTTGCGCCTGCCACCAGTACTGGCGCCTGAAAGGATTTCTAGATGAGCAGTAAAGCAATCACTACGTTCGACCACAATTTCGACGACCTG  >  2:150389/1‑149                                                                                                                                                           AGGCTGCGAGCCCGCAGGCCCCCGCTACCCCGCCAGTTGCACCCTCTGCGCCCGCGGCCGTTGCGCCTGCCACCAGTACTGGCGCCTGAAAGGATTTCTAGATGAGCAGTAAAGCAATCACTACGTTCGACCACAATTTCGA         <  7:102453/142‑1                                                                                                                                                           AGGCTGCGAGCCCGCAGGCCCCCGCTACCCCGCCAGTTGCACCCTCTGCGCCCGCGGCCGTTGCGCCTGCCACCAGTACTGGCGCCTGAAAGGATTTCTAGATGAGCAGTAAAGCAATCACTACGTTCGACCACAATTTCGA         >  8:102453/1‑142                                                                                                                                                                                                                                                                                                                 GATTGCTTTACTGCTCATCTAGAAATCCTTTCAGGCGCCAGTACTGGTGGCAGGCGCAACGGCCGCGGGCGCAGAGGGTGCAACTGGCGGGGTAGCGGGGGCCTGCGGGCTCGCAGCCTGGCTGCCGCGCTGAAGCTTGGCCTGCTGGGCAGCCAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/2018743‑2018588 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcagccagGCTGCGAGCCCGCAGGCCCCCGCTACCCCGCCAGTTGCACCCTCTGCGCCCGCGGCCGTTGCGCCTGCCACCAGTACTGGCGCCTGAAAGGATTTCTAGATGAGCAGTAAAGCAATCACTACGTTCGACCACAATTTCGACGACCTG  >  NC_002947/2018627‑2018773

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.